CSPI03G19240 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G19240
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionATP-dependent RNA helicase, putative
LocationChr3 : 15050281 .. 15051459 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCCAGATTTCAAGAGAATGGTTGTTGGTTTGTAATAGGAGAGGACATCAACGTTCATCAACTAAACATTTTTAGTAAATAAGAAAAGGGAGAGGACGTTAATGGTTATTGGGATATTTGTCTAGGTCGTCATGTGCTATCTGGACATTATTTATTCTTGATGTAATTTCTCTTACTTGTCAGAAACTAAAATATAAATATACATTTGTCATTAAGTTATCCTTAATTGCCAAAGCATTTCCAAATGACCTAATGCTTCCTTGGTCTTTTCTTGTCCTAGAACTGTCTCTTCATTCTCAGCTTCTCTGTATCTAGTGCCAGTGTGACTTTTTTACTGATTACTAGTTCGTTTCTAATATTTTTTCTTACAGGATGCTCAGAATAAGGTGGCAGCTTTTGCTCTTTGTCACTTGTTTCCAGATCTTCCTGTTCATGTTGCACTTATTGAGCCATATGCTTCTCTTGTTATGCAGTGGAAGGCAGGTAGCTGTTTTCACCATGCGCCCATTTAATTGGCTCTGCTTTTCATTCCAATCCACGGTGCAGTAGAGGAAAATATATAGAATATTAAAGCTTGAAAATGGTTAGGAAAATATTATTATCAATCAAAAAAATGTTTGTGTCTGTGCATTTTAATGTTGCATGGTTAGTCATGTTACACAGCAGGATTAGTAAATTTGTTGATACAACTAATACAATGATTTCTTATAATTGATCAAACAAATATTTGAAGTTTCATCTAGTATTTCAAATATGTAATCCCTGCATCATAATAAACATCTATTTGATTTGTTAAACTAGAATTCCATAACAACAATATAAGTATTTGTGTATATATCCTTTATTGCTAATGCCCTTTAATCTTTGCCATTGATTTTCATCGAAAAGTAGATGTTTATGATATATGGAGCACAATTATGCCTGCTTGGAATTTATGATATGGAGCACAATTATTCATGCTTGGAATTTGTAATCTTGCAGGAGAATCAATTAGCAAAGTTGACGACGATGAGAAAGATCGAAGGGCTAGTTTTGTTGATTCTTTGCTTGATGCTTCCAATATTGGTTCTGCTTCTAAAACTCTTGTTGGGAAAGTTGAACGGCTCAATATCGAGGATGATAAGAAGCCACGTGCTCTTGAACTTAATTCACATTCATTTGGGGAAAGTAAGTAG

mRNA sequence

ATGAGGCCAGATTTCAAGAGAATGGTTGATGCTCAGAATAAGGTGGCAGCTTTTGCTCTTTGTCACTTGTTTCCAGATCTTCCTGTTCATGTTGCACTTATTGAGCCATATGCTTCTCTTGTTATGCAGTGGAAGGCAGGAGAATCAATTAGCAAAGTTGACGACGATGAGAAAGATCGAAGGGCTAGTTTTGTTGATTCTTTGCTTGATGCTTCCAATATTGGTTCTGCTTCTAAAACTCTTGTTGGGAAAGTTGAACGGCTCAATATCGAGGATGATAAGAAGCCACGTGCTCTTGAACTTAATTCACATTCATTTGGGGAAAGTAAGTAG

Coding sequence (CDS)

ATGAGGCCAGATTTCAAGAGAATGGTTGATGCTCAGAATAAGGTGGCAGCTTTTGCTCTTTGTCACTTGTTTCCAGATCTTCCTGTTCATGTTGCACTTATTGAGCCATATGCTTCTCTTGTTATGCAGTGGAAGGCAGGAGAATCAATTAGCAAAGTTGACGACGATGAGAAAGATCGAAGGGCTAGTTTTGTTGATTCTTTGCTTGATGCTTCCAATATTGGTTCTGCTTCTAAAACTCTTGTTGGGAAAGTTGAACGGCTCAATATCGAGGATGATAAGAAGCCACGTGCTCTTGAACTTAATTCACATTCATTTGGGGAAAGTAAGTAG
Homology
[Close]
BLAST of CSPI03G19240 vs. Swiss-Prot
Match: DEXH4_ARATH (DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana GN=At1g58050 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-14
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1 

Query: 4   DFKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRAS 63
           DF+ + DAQN+VAAFAL  LF DLPVH A+ EPYASLV+ WK  ES+  +   E+ RR  
Sbjct: 457 DFESIQDAQNRVAAFALHKLFSDLPVHFAITEPYASLVLIWKQEESLG-ITSREEQRREK 516

Query: 64  FVDSLLDASN 74
           FV+SLL+A N
Sbjct: 517 FVESLLEADN 525

[Close]
BLAST of CSPI03G19240 vs. Swiss-Prot
Match: DEXH7_ARATH (DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana GN=At1g58060 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.4e-14
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1 

Query: 4   DFKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESI-SKVDDDEKDRRA 63
           +F+ + DAQNKVAAFAL  LF DLPVH A+ EPYASLV+ WK  E + + +   E+DRRA
Sbjct: 472 NFESIEDAQNKVAAFALHKLFSDLPVHFAITEPYASLVLIWKQEELLCTTIQSTEEDRRA 531

Query: 64  SFVDSLLD 71
           +FVD LL+
Sbjct: 532 NFVDKLLE 539

[Close]
BLAST of CSPI03G19240 vs. TrEMBL
Match: A0A0A0LAE3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G229380 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 7.3e-49
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 10  DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 69
           DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL
Sbjct: 235 DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 294

Query: 70  DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGESK 111
           DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGESK
Sbjct: 295 DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGESK 335

[Close]
BLAST of CSPI03G19240 vs. TrEMBL
Match: M5XY08_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000230mg PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-19
Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = 1 

Query: 5   FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASF 64
           F    DAQN+VAAFALC LFPDLPVH+ +IEPYASLV+QWK GES + V+D ++DRRA+F
Sbjct: 439 FDSAEDAQNRVAAFALCQLFPDLPVHLLIIEPYASLVIQWKEGESSTTVEDSQEDRRATF 498

Query: 65  VDSLLDASNIGSASKT------LVGKVERLNIED 93
           VDSLL A    S S        L  +V+ L++E+
Sbjct: 499 VDSLLSADGSASTSAANFMYDILPEEVQELHVEE 532

[Close]
BLAST of CSPI03G19240 vs. TrEMBL
Match: F6HK50_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00800 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-17
Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 1 

Query: 5   FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASF 64
           F+   DAQN VAA+AL  LFPDLP+H+A+ EPYAS V+QWK GES  +++D E+DRRA F
Sbjct: 471 FESAEDAQNAVAAYALYQLFPDLPIHLAITEPYASFVIQWKEGESSIRIEDSEEDRRAGF 530

Query: 65  VDSLLDASNIGSAS------KTLVGKVERLNIEDDKKPRA 99
           V+S+LDA + GS +       +L  K +   IE+++   A
Sbjct: 531 VNSILDAGDSGSTAFVDVTDNSLPKKFQMPQIEENRNLNA 570

[Close]
BLAST of CSPI03G19240 vs. TrEMBL
Match: A0A0B0NB59_GOSAR (DEAH-box ATP-dependent helicase OS=Gossypium arboreum GN=F383_07581 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.3e-17
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 1 

Query: 5   FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASF 64
           F+   DAQN+VAAFALC LFPDLP  + + EPY+SL+ QWK GES++K+ D+E+DRRA F
Sbjct: 269 FESAEDAQNRVAAFALCQLFPDLPTQLIVTEPYSSLIFQWKGGESLTKIGDNEEDRRAGF 328

Query: 65  VDSLLDASNIGS------ASKTLVGKVERLNIEDDKKP 97
           VD LL   +  S       +++ + + ++  IED+K P
Sbjct: 329 VDRLLRDEDSRSKAPGHDTNESALDEFQKTYIEDNKTP 366

[Close]
BLAST of CSPI03G19240 vs. TrEMBL
Match: W9QMV9_9ROSA (ATP-dependent RNA helicase DHX29 OS=Morus notabilis GN=L484_018450 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.6e-17
Identity = 52/101 (51.49%), Postives = 68/101 (67.33%), Query Frame = 1 

Query: 5   FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASF 64
           F+ + DAQN+VAAFAL HLF DLP+H+ L EPYASLV QWK G+S   +++ E+ RRASF
Sbjct: 469 FESVEDAQNRVAAFALYHLFSDLPIHLILTEPYASLVFQWKEGDSSINIEESEEVRRASF 528

Query: 65  VDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSHS 106
           VDSLL+A   GSAS       E  N+  + +   +E N +S
Sbjct: 529 VDSLLNAD--GSASTVPTDVTE--NVFQENQESLIEGNKNS 565

[Close]
BLAST of CSPI03G19240 vs. TAIR10
Match: AT1G58050.1 (AT1G58050.1 RNA helicase family protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-15
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1 

Query: 4   DFKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRAS 63
           DF+ + DAQN+VAAFAL  LF DLPVH A+ EPYASLV+ WK  ES+  +   E+ RR  
Sbjct: 457 DFESIQDAQNRVAAFALHKLFSDLPVHFAITEPYASLVLIWKQEESLG-ITSREEQRREK 516

Query: 64  FVDSLLDASN 74
           FV+SLL+A N
Sbjct: 517 FVESLLEADN 525

[Close]
BLAST of CSPI03G19240 vs. TAIR10
Match: AT1G58060.1 (AT1G58060.1 RNA helicase family protein)

HSP 1 Score: 78.2 bits (191), Expect = 3.6e-15
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1 

Query: 4   DFKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESI-SKVDDDEKDRRA 63
           +F+ + DAQNKVAAFAL  LF DLPVH A+ EPYASLV+ WK  E + + +   E+DRRA
Sbjct: 472 NFESIEDAQNKVAAFALHKLFSDLPVHFAITEPYASLVLIWKQEELLCTTIQSTEEDRRA 531

Query: 64  SFVDSLLD 71
           +FVD LL+
Sbjct: 532 NFVDKLLE 539

[Close]
BLAST of CSPI03G19240 vs. NCBI nr
Match: gi|700202479|gb|KGN57612.1| (hypothetical protein Csa_3G229380 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 1.0e-48
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 10  DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 69
           DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL
Sbjct: 235 DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 294

Query: 70  DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGESK 111
           DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGESK
Sbjct: 295 DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGESK 335

[Close]
BLAST of CSPI03G19240 vs. NCBI nr
Match: gi|778680315|ref|XP_011651288.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 4.0e-48
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 1 

Query: 5   FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASF 64
           F+   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASF
Sbjct: 346 FESAEDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASF 405

Query: 65  VDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE 109
           VDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE
Sbjct: 406 VDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE 449

[Close]
BLAST of CSPI03G19240 vs. NCBI nr
Match: gi|778680313|ref|XP_011651287.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 4.0e-48
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 1 

Query: 5   FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASF 64
           F+   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASF
Sbjct: 500 FESAEDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASF 559

Query: 65  VDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE 109
           VDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE
Sbjct: 560 VDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE 603

[Close]
BLAST of CSPI03G19240 vs. NCBI nr
Match: gi|659112042|ref|XP_008456037.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 4.8e-46
Identity = 95/104 (91.35%), Postives = 100/104 (96.15%), Query Frame = 1 

Query: 5   FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASF 64
           F+   DAQNKVAAFALCHLFPDLP HVALIEPYASLVMQWKAGESISKVDD+EKDRRASF
Sbjct: 346 FESAEDAQNKVAAFALCHLFPDLPFHVALIEPYASLVMQWKAGESISKVDDNEKDRRASF 405

Query: 65  VDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE 109
           VDSLLDASNIGSASKTLVGK+E+LNIEDDKKPRAL+LNSHSFGE
Sbjct: 406 VDSLLDASNIGSASKTLVGKIEQLNIEDDKKPRALDLNSHSFGE 449

[Close]
BLAST of CSPI03G19240 vs. NCBI nr
Match: gi|659112040|ref|XP_008456036.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 4.8e-46
Identity = 95/104 (91.35%), Postives = 100/104 (96.15%), Query Frame = 1 

Query: 5   FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASF 64
           F+   DAQNKVAAFALCHLFPDLP HVALIEPYASLVMQWKAGESISKVDD+EKDRRASF
Sbjct: 500 FESAEDAQNKVAAFALCHLFPDLPFHVALIEPYASLVMQWKAGESISKVDDNEKDRRASF 559

Query: 65  VDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE 109
           VDSLLDASNIGSASKTLVGK+E+LNIEDDKKPRAL+LNSHSFGE
Sbjct: 560 VDSLLDASNIGSASKTLVGKIEQLNIEDDKKPRALDLNSHSFGE 603

The following BLAST results are available for this feature:
BLAST of CSPI03G19240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DEXH4_ARATH2.2e-1458.57DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana... [more]
DEXH7_ARATH6.4e-1458.82DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana... [more]
BLAST of CSPI03G19240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAE3_CUCSA7.3e-49100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G229380 PE=4 SV=1[more]
M5XY08_PRUPE1.6e-1956.38Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000230mg PE=4 SV=1[more]
F6HK50_VITVI2.5e-1749.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00800 PE=4 SV=... [more]
A0A0B0NB59_GOSAR4.3e-1747.96DEAH-box ATP-dependent helicase OS=Gossypium arboreum GN=F383_07581 PE=4 SV=1[more]
W9QMV9_9ROSA9.6e-1751.49ATP-dependent RNA helicase DHX29 OS=Morus notabilis GN=L484_018450 PE=4 SV=1[more]
BLAST of CSPI03G19240 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G58050.11.2e-1558.57 RNA helicase family protein[more]
AT1G58060.13.6e-1558.82 RNA helicase family protein[more]
BLAST of CSPI03G19240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202479|gb|KGN57612.1|1.0e-48100.00hypothetical protein Csa_3G229380 [Cucumis sativus][more]
gi|778680315|ref|XP_011651288.1|4.0e-4896.15PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus][more]
gi|778680313|ref|XP_011651287.1|4.0e-4896.15PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus][more]
gi|659112042|ref|XP_008456037.1|4.8e-4691.35PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo][more]
gi|659112040|ref|XP_008456036.1|4.8e-4691.35PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008026 ATP-dependent helicase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G19240.1CSPI03G19240.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G19240Csa3G229380Cucumber (Chinese Long) v2cpicuB120
CSPI03G19240MELO3C019420Melon (DHL92) v3.5.1cpimeB241
CSPI03G19240Cucsa.032730Cucumber (Gy14) v1cgycpiB003
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G19240Cucumber (Chinese Long) v3cpicucB144
CSPI03G19240Watermelon (97103) v2cpiwmbB221
CSPI03G19240Wax gourdcpiwgoB283
CSPI03G19240Cucurbita maxima (Rimu)cmacpiB326
CSPI03G19240Cucurbita maxima (Rimu)cmacpiB705
CSPI03G19240Cucurbita moschata (Rifu)cmocpiB315
CSPI03G19240Cucurbita moschata (Rifu)cmocpiB698
CSPI03G19240Watermelon (Charleston Gray)cpiwcgB237
CSPI03G19240Watermelon (97103) v1cpiwmB242
CSPI03G19240Cucurbita pepo (Zucchini)cpecpiB208
CSPI03G19240Cucurbita pepo (Zucchini)cpecpiB388
CSPI03G19240Bottle gourd (USVL1VR-Ls)cpilsiB209
CSPI03G19240Melon (DHL92) v3.6.1cpimedB239
CSPI03G19240Cucumber (Gy14) v2cgybcpiB110
CSPI03G19240Silver-seed gourdcarcpiB0047
CSPI03G19240Silver-seed gourdcarcpiB0685