Cucsa.032730 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.032730
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionATP-dependent RNA helicase, putative
Locationscaffold00429 : 1997722 .. 1998517 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGCTCAGAATAAGGTGGCAGCTTTTGCTCTTTGTCACTTGTTTCCAGATCTTCCTGTTCATGTTGCACTTATTGAGCCATATGCTTCTCTTGTTATGCAGTGGAAGGCAGGTAGCTGTTTTCACCATGCGCCCATTTAATTGGCTCTGCTTTTCATTCCAATCCACGGTGCAGTAGAGGAAAATATATAGAATATTAAAGCTTGAAAATGGTTAGGAAAATATTATTATCAATCAAAAAAATGTTTGTGTCTGTGCATTTTAATGTTGCATGGTTAGTCATGTTACACAGCAGGATTAGTAAATTTGTTGATACAACTAATACAATGATTTCTTATAATTGATCAAACAAATATTTGAAGTTTCATCTAGTATTTCAAATATGTAATCCCTGCATCATAATAAACATCTATTTGATTTGTTAAACTAGAATTCCATAACAACAATACAAGTATTTGTGTATATATCCTTTATTGCTAATGCCCTTTAATCTTTGCCATTGATTTTCATCGAAAAGTAGATGTTTATGATATATGGAGCACAATTATGCCTGCTTGGAATTTATGATATGGAGCACAATTATGCATGCTTGGAATTTGTAATCTTGCAGGAGAATCAATTAGCAAAGTTGACGACGATGAGAAAGATCGAAGGGCTAGTTTTGTTGATTCTTTGCTTGATGCTTCCAATATTGGTTCTGCTTCTAAAACTCTTGTTGGGAAAGTTGAACGGCTCAATATCGAGGATGATAAGAAGCCACGTGCTCTTGAACTTAATTCACATTCATTCGGGGAAA

mRNA sequence

GATGCTCAGAATAAGGTGGCAGCTTTTGCTCTTTGTCACTTGTTTCCAGATCTTCCTGTTCATGTTGCACTTATTGAGCCATATGCTTCTCTTGTTATGCAGTGGAAGGCAGGAGAATCAATTAGCAAAGTTGACGACGATGAGAAAGATCGAAGGGCTAGTTTTGTTGATTCTTTGCTTGATGCTTCCAATATTGGTTCTGCTTCTAAAACTCTTGTTGGGAAAGTTGAACGGCTCAATATCGAGGATGATAAGAAGCCACGTGCTCTTGAACTTAATTCACATTCATTCGGGGAAA

Coding sequence (CDS)

GATGCTCAGAATAAGGTGGCAGCTTTTGCTCTTTGTCACTTGTTTCCAGATCTTCCTGTTCATGTTGCACTTATTGAGCCATATGCTTCTCTTGTTATGCAGTGGAAGGCAGGAGAATCAATTAGCAAAGTTGACGACGATGAGAAAGATCGAAGGGCTAGTTTTGTTGATTCTTTGCTTGATGCTTCCAATATTGGTTCTGCTTCTAAAACTCTTGTTGGGAAAGTTGAACGGCTCAATATCGAGGATGATAAGAAGCCACGTGCTCTTGAACTTAATTCACATTCATTCGGGGAAA

Protein sequence

DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGEX
Homology
[Close]
BLAST of Cucsa.032730 vs. Swiss-Prot
Match: DEXH7_ARATH (DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana GN=At1g58060 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.9e-13
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 1 

Query: 1   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESI-SKVDDDEKDRRASFVDSL 60
           DAQNKVAAFAL  LF DLPVH A+ EPYASLV+ WK  E + + +   E+DRRA+FVD L
Sbjct: 478 DAQNKVAAFALHKLFSDLPVHFAITEPYASLVLIWKQEELLCTTIQSTEEDRRANFVDKL 537

Query: 61  LD 62
           L+
Sbjct: 538 LE 539

[Close]
BLAST of Cucsa.032730 vs. Swiss-Prot
Match: DEXH4_ARATH (DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana GN=At1g58050 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.7e-13
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1 

Query: 1   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 60
           DAQN+VAAFAL  LF DLPVH A+ EPYASLV+ WK  ES+  +   E+ RR  FV+SLL
Sbjct: 463 DAQNRVAAFALHKLFSDLPVHFAITEPYASLVLIWKQEESLG-ITSREEQRREKFVESLL 522

Query: 61  DASN 65
           +A N
Sbjct: 523 EADN 525

[Close]
BLAST of Cucsa.032730 vs. TrEMBL
Match: A0A0A0LAE3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G229380 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 5.5e-48
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 60
           DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL
Sbjct: 235 DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 294

Query: 61  DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE 100
           DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE
Sbjct: 295 DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE 333

[Close]
BLAST of Cucsa.032730 vs. TrEMBL
Match: M5XY08_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000230mg PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19
Identity = 52/89 (58.43%), Postives = 66/89 (74.16%), Query Frame = 1 

Query: 1   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 60
           DAQN+VAAFALC LFPDLPVH+ +IEPYASLV+QWK GES + V+D ++DRRA+FVDSLL
Sbjct: 444 DAQNRVAAFALCQLFPDLPVHLLIIEPYASLVIQWKEGESSTTVEDSQEDRRATFVDSLL 503

Query: 61  DASNIGSASKT------LVGKVERLNIED 84
            A    S S        L  +V+ L++E+
Sbjct: 504 SADGSASTSAANFMYDILPEEVQELHVEE 532

[Close]
BLAST of Cucsa.032730 vs. TrEMBL
Match: F6HK50_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00800 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.9e-17
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1 

Query: 1   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 60
           DAQN VAA+AL  LFPDLP+H+A+ EPYAS V+QWK GES  +++D E+DRRA FV+S+L
Sbjct: 476 DAQNAVAAYALYQLFPDLPIHLAITEPYASFVIQWKEGESSIRIEDSEEDRRAGFVNSIL 535

Query: 61  DASNIGSAS------KTLVGKVERLNIEDDKKPRA 90
           DA + GS +       +L  K +   IE+++   A
Sbjct: 536 DAGDSGSTAFVDVTDNSLPKKFQMPQIEENRNLNA 570

[Close]
BLAST of Cucsa.032730 vs. TrEMBL
Match: A0A0B0NB59_GOSAR (DEAH-box ATP-dependent helicase OS=Gossypium arboreum GN=F383_07581 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.1e-17
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 1 

Query: 1   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 60
           DAQN+VAAFALC LFPDLP  + + EPY+SL+ QWK GES++K+ D+E+DRRA FVD LL
Sbjct: 274 DAQNRVAAFALCQLFPDLPTQLIVTEPYSSLIFQWKGGESLTKIGDNEEDRRAGFVDRLL 333

Query: 61  DASNIGS------ASKTLVGKVERLNIEDDKKP 88
              +  S       +++ + + ++  IED+K P
Sbjct: 334 RDEDSRSKAPGHDTNESALDEFQKTYIEDNKTP 366

[Close]
BLAST of Cucsa.032730 vs. TrEMBL
Match: W9QMV9_9ROSA (ATP-dependent RNA helicase DHX29 OS=Morus notabilis GN=L484_018450 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-16
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 1 

Query: 1   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 60
           DAQN+VAAFAL HLF DLP+H+ L EPYASLV QWK G+S   +++ E+ RRASFVDSLL
Sbjct: 474 DAQNRVAAFALYHLFSDLPIHLILTEPYASLVFQWKEGDSSINIEESEEVRRASFVDSLL 533

Query: 61  DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHS 97
           +A   GSAS       E  N+  + +   +E N +S
Sbjct: 534 NAD--GSASTVPTDVTE--NVFQENQESLIEGNKNS 565

[Close]
BLAST of Cucsa.032730 vs. TAIR10
Match: AT1G58060.1 (AT1G58060.1 RNA helicase family protein)

HSP 1 Score: 75.9 bits (185), Expect = 1.6e-14
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 1 

Query: 1   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESI-SKVDDDEKDRRASFVDSL 60
           DAQNKVAAFAL  LF DLPVH A+ EPYASLV+ WK  E + + +   E+DRRA+FVD L
Sbjct: 478 DAQNKVAAFALHKLFSDLPVHFAITEPYASLVLIWKQEELLCTTIQSTEEDRRANFVDKL 537

Query: 61  LD 62
           L+
Sbjct: 538 LE 539

[Close]
BLAST of Cucsa.032730 vs. TAIR10
Match: AT1G58050.1 (AT1G58050.1 RNA helicase family protein)

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-14
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1 

Query: 1   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 60
           DAQN+VAAFAL  LF DLPVH A+ EPYASLV+ WK  ES+  +   E+ RR  FV+SLL
Sbjct: 463 DAQNRVAAFALHKLFSDLPVHFAITEPYASLVLIWKQEESLG-ITSREEQRREKFVESLL 522

Query: 61  DASN 65
           +A N
Sbjct: 523 EADN 525

[Close]
BLAST of Cucsa.032730 vs. NCBI nr
Match: gi|778680315|ref|XP_011651288.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 8.0e-48
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 60
           DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL
Sbjct: 351 DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 410

Query: 61  DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE 100
           DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE
Sbjct: 411 DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE 449

[Close]
BLAST of Cucsa.032730 vs. NCBI nr
Match: gi|700202479|gb|KGN57612.1| (hypothetical protein Csa_3G229380 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 8.0e-48
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 60
           DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL
Sbjct: 235 DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 294

Query: 61  DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE 100
           DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE
Sbjct: 295 DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE 333

[Close]
BLAST of Cucsa.032730 vs. NCBI nr
Match: gi|778680313|ref|XP_011651287.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 8.0e-48
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 60
           DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL
Sbjct: 505 DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 564

Query: 61  DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE 100
           DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE
Sbjct: 565 DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE 603

[Close]
BLAST of Cucsa.032730 vs. NCBI nr
Match: gi|659112042|ref|XP_008456037.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo])

HSP 1 Score: 191.0 bits (484), Expect = 9.7e-46
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 1 

Query: 1   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 60
           DAQNKVAAFALCHLFPDLP HVALIEPYASLVMQWKAGESISKVDD+EKDRRASFVDSLL
Sbjct: 351 DAQNKVAAFALCHLFPDLPFHVALIEPYASLVMQWKAGESISKVDDNEKDRRASFVDSLL 410

Query: 61  DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE 100
           DASNIGSASKTLVGK+E+LNIEDDKKPRAL+LNSHSFGE
Sbjct: 411 DASNIGSASKTLVGKIEQLNIEDDKKPRALDLNSHSFGE 449

[Close]
BLAST of Cucsa.032730 vs. NCBI nr
Match: gi|659112040|ref|XP_008456036.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo])

HSP 1 Score: 191.0 bits (484), Expect = 9.7e-46
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 1 

Query: 1   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLL 60
           DAQNKVAAFALCHLFPDLP HVALIEPYASLVMQWKAGESISKVDD+EKDRRASFVDSLL
Sbjct: 505 DAQNKVAAFALCHLFPDLPFHVALIEPYASLVMQWKAGESISKVDDNEKDRRASFVDSLL 564

Query: 61  DASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGE 100
           DASNIGSASKTLVGK+E+LNIEDDKKPRAL+LNSHSFGE
Sbjct: 565 DASNIGSASKTLVGKIEQLNIEDDKKPRALDLNSHSFGE 603

The following BLAST results are available for this feature:
BLAST of Cucsa.032730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DEXH7_ARATH2.9e-1362.90DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana... [more]
DEXH4_ARATH3.7e-1360.94DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana... [more]
BLAST of Cucsa.032730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAE3_CUCSA5.5e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G229380 PE=4 SV=1[more]
M5XY08_PRUPE1.4e-1958.43Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000230mg PE=4 SV=1[more]
F6HK50_VITVI3.9e-1750.53Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00800 PE=4 SV=... [more]
A0A0B0NB59_GOSAR5.1e-1749.46DEAH-box ATP-dependent helicase OS=Gossypium arboreum GN=F383_07581 PE=4 SV=1[more]
W9QMV9_9ROSA2.5e-1653.13ATP-dependent RNA helicase DHX29 OS=Morus notabilis GN=L484_018450 PE=4 SV=1[more]
BLAST of Cucsa.032730 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G58060.11.6e-1462.90 RNA helicase family protein[more]
AT1G58050.12.1e-1460.94 RNA helicase family protein[more]
BLAST of Cucsa.032730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778680315|ref|XP_011651288.1|8.0e-48100.00PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus][more]
gi|700202479|gb|KGN57612.1|8.0e-48100.00hypothetical protein Csa_3G229380 [Cucumis sativus][more]
gi|778680313|ref|XP_011651287.1|8.0e-48100.00PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus][more]
gi|659112042|ref|XP_008456037.1|9.7e-4694.95PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo][more]
gi|659112040|ref|XP_008456036.1|9.7e-4694.95PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.032730.1Cucsa.032730.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.032730MELO3C019420Melon (DHL92) v3.5.1cgymeB002
Cucsa.032730CSPI03G19240Wild cucumber (PI 183967)cgycpiB003
Cucsa.032730Bhi01G001182Wax gourdcgywgoB003
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.032730Cucumber (Chinese Long) v3cgycucB006
Cucsa.032730Watermelon (97103) v2cgywmbB003
Cucsa.032730Cucurbita maxima (Rimu)cgycmaB0007
Cucsa.032730Cucurbita maxima (Rimu)cgycmaB0012
Cucsa.032730Cucurbita moschata (Rifu)cgycmoB0006
Cucsa.032730Cucurbita moschata (Rifu)cgycmoB0012
Cucsa.032730Cucumber (Chinese Long) v2cgycuB003
Cucsa.032730Watermelon (Charleston Gray)cgywcgB003
Cucsa.032730Watermelon (97103) v1cgywmB002
Cucsa.032730Cucurbita pepo (Zucchini)cgycpeB0005
Cucsa.032730Cucurbita pepo (Zucchini)cgycpeB0007
Cucsa.032730Bottle gourd (USVL1VR-Ls)cgylsiB003
Cucsa.032730Melon (DHL92) v3.6.1cgymedB002
Cucsa.032730Silver-seed gourdcarcgyB0048
Cucsa.032730Silver-seed gourdcarcgyB0730