MELO3C019148.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019148.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	50S ribosomal protein 5, chloroplastic
Location	chr08 : 14535660 .. 14537429 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACAAAAAGCTTATCCAGAGATAGTGAGGGGCTCCCAGTTCACGCCATGGCTTCGTTTCTCCTCTGCTCCAATCCCCTCTCCACCTCTTTCCATTTTTCTACGTTGCACCCATGTTTTCCACCCACTTCTGCCATCCCTAGTAAGTCTCTCCTCGTGAACTTTCCTTTCCCTTCCTCTGCTCGACGGGATCGAATGAATGTCTTTGTCTAATTCTAATTTTTATCTTCCTTTCTCTTTCTACTTATTGTTTGTTGTGCGATTTATTCAAATGGGTAATTTTTTTTGGTCGAACTCGATAAACTATGTGGTGTTTGAGAGAATTTTCTTGCTTGCAGTCATTTGTCCGTCAGGCATTTTGTCAAACAGTTGGTGTCTTTATTTTGAGACTCGATTTTTTAAGCTTCTCTTTTGATGTGCACTGGATCTCGATCTCGCTCGCTTGAATGTGTTTGTGTTCTCTATATTGTGTTTTATATGCTGGTTGCTCTGTTTCTTGTTCGTCATCCTCAATTTCACATATAGTCTACAAGTTTCCTTGTCTTGAATTAGGGTTGAATTTCATTGAAGAGATTGTTTTGAGTGAATTTCATGAATATTAATTTGATTCATAATAGCAAATAGAAGAAAATAACATTATCAGGATCCCTAGCCCCAAACGCTGTGCTAGAATACATATTAAAAAACAAACTCAATCAAAAGCCCTTTAAATAGATTACAGTCTGTTTATTCTTTGGTTATATTACAACTAAGCAAGCTATTTAAACTTGGGTTATATTAATAAAAGAAAGTATTACAAGCTTGTCGGCGAAACTTTAAAGTTTGTTTACTAACTAATAGTCCATTAAGTGTTTATTAAGTCTCTAAACTTTTAAACAATATCTGGTAGGTCTTTAAAATATTAGTCTTAAACTTTTAACTGTCTTTGTTTGGCGCTGAATTTTTGTAGAGATCTCATATATCATCAGGTTTACAATCTATTAAACACTCGTTTAAATTAAGGGCTCTCTTAGACACAATTCGATGAGCTTAGAGACCAAAATAATACATATTGGCTTTAATTGGAATGATTATTTCCTTGGTTTTTATGAATCTCAGTCCAATTTCTATTCCTTTATTGTGGTTTCGATTTCAGGCTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAAACCTTTAATGGAGTCCGGCTACGGAACCACCCTTTTGTTGAAAATACAGCATCGTTAGTTGTCAAAGCTGCATCTGAGACTGATGCTACGGGAGAAATTGATAGTAGTGAAGTTCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAAGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTACGGAGGAAGCGGCTGGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGATAATCCTTTTAGCTCCTTGAATTCAATTCTTGCAGATCGAGAGATGCCATTTCTGCTCATCGCTTCCAATTTACTGTCTTATTTCTTTATGCTTTCAAGGAAATGTATTTGCTTCTTAATATACCTGAAAGGATCCAGTGAGTAATGAAATGTGCAAATTGTTCTTAGTTTTGAACGACTAAATTGGGAGTTGAAAGATGACTGTACAGTTCAACAAGCTTGAATACTTGATTTAGATTTTATTGGTAATCTTGCAAAGAAAACCTTGCAC

mRNA sequence

ATGTTACAAAAAGCTTATCCAGAGATAGTGAGGGGCTCCCAGTTCACGCCATGGCTTCGTTTCTCCTCTGCTCCAATCCCCTCTCCACCTCTTTCCATTTTTCTACGTTGCACCCATGTTTTCCACCCACTTCTGCCATCCCTAGCTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAAACCTTTAATGGAGTCCGGCTACGGAACCACCCTTTTGTTGAAAATACAGCATCGTTAGTTGTCAAAGCTGCATCTGAGACTGATGCTACGGGAGAAATTGATAGTAGTGAAGTTCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAAGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTACGGAGGAAGCGGCTGGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGATAATCCTTTTAGCTCCTTGAATTCAATTCTTGCAGATCGAGAGATGCCATTTCTGCTCATCGCTTCCAATTTACTGTCTTATTTCTTTATGCTTTCAAGGAAATGTATTTGCTTCTTAATATACCTGAAAGGATCCAGTGAGTAATGAAATGTGCAAATTGTTCTTAGTTTTGAACGACTAAATTGGGAGTTGAAAGATGACTGTACAGTTCAACAAGCTTGAATACTTGATTTAGATTTTATTGGTAATCTTGCAAAGAAAACCTTGCAC

Coding sequence (CDS)

ATGGCTTCGTTTCTCCTCTGCTCCAATCCCCTCTCCACCTCTTTCCATTTTTCTACGTTGCACCCATGTTTTCCACCCACTTCTGCCATCCCTAGCTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAAACCTTTAATGGAGTCCGGCTACGGAACCACCCTTTTGTTGAAAATACAGCATCGTTAGTTGTCAAAGCTGCATCTGAGACTGATGCTACGGGAGAAATTGATAGTAGTGAAGTTCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAAGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTACGGAGGAAGCGGCTGGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGA

Protein sequence

MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Homology

[Close]

BLAST of MELO3C019148.2 vs. NCBI nr
Match: XP_008455762.1 (PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo])

HSP 1 Score: 242.7 bits (618), Expect = 8.3e-61
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVEN 60
           MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVEN
Sbjct: 1   MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVEN 60

Query: 61  TASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLXXXXXXXXXXX 120
           TASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLXXXXXXXXXXX
Sbjct: 61  TASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXHLRKKGRWPPSKMKKLKNV 152
           XXXXXXXXXXXXHLRKKGRWPPSKMKKLKNV
Sbjct: 121 XXXXXXXXXXXXHLRKKGRWPPSKMKKLKNV 151

[Close]

BLAST of MELO3C019148.2 vs. NCBI nr
Match: XP_004144312.1 (PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis sativus] >KGN54666.1 hypothetical protein Csa_4G419580 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-52
Identity = 143/153 (93.46%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MASFLLCSNPLSTSFHFST--LHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFV 60
           MASFLL SNPLSTSFHFST     CFPPTSAIPSSMLLMKPIGFQPK FNGVRLRNH FV
Sbjct: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60

Query: 61  ENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLXXXXXXXXX 120
           ENTASLVVKAASETDATGE DSS+VQPAAEAKKEDVPVDKLPLESKLQERLXXXXXXXXX
Sbjct: 61  ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXHLRKKGRWPPSKMKKLKNV 152
           XXXXXXXXXXXXXXHLRKKGRWPPSKMKKLKNV
Sbjct: 121 XXXXXXXXXXXXXXHLRKKGRWPPSKMKKLKNV 153

[Close]

BLAST of MELO3C019148.2 vs. NCBI nr
Match: XP_022154476.1 (50S ribosomal protein 5, chloroplastic [Momordica charantia])

HSP 1 Score: 161.0 bits (406), Expect = 3.2e-36
Identity = 117/156 (75.00%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 3   SFLLCSNPLSTSFH-------FSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNH 62
           +FLLCSNPLSTS +                 TSA PSS+LLM+P+GFQPK FNGVRLRN 
Sbjct: 2   AFLLCSNPLSTSLYSXXXXXXXXXXXXXXXXTSAAPSSILLMRPVGFQPKIFNGVRLRNV 61

Query: 63  PFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLXXXXXX 122
            FVENTASL+VKA SE D TGE DS+E QP AEAKKEDVPVDKLPLESKLQER XXXXXX
Sbjct: 62  SFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERXXXXXXX 121

Query: 123 XXXXXXXXXXXXXXXXXHLRKKGRWPPSKMKKLKNV 152
           XXXXXXXXXXXXXXXXX   KKGRWPPSKMKKLKNV
Sbjct: 122 XXXXXXXXXXXXXXXXXXXXKKGRWPPSKMKKLKNV 157

[Close]

BLAST of MELO3C019148.2 vs. NCBI nr
Match: XP_023518173.1 (50S ribosomal protein 5, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.7 bits (387), Expect = 5.1e-34
Identity = 95/152 (62.50%), Postives = 99/152 (65.13%), Query Frame = 0


Query: 3   SFLLCSNPLSTSFHFSTLHP---CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVE 62
           +FLLCSNP+STS H S   P   CFP TSA  SSMLLMKP  FQPK FNGV L N  FVE
Sbjct: 2   AFLLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKHFNGVGLGNPSFVE 61

Query: 63  NTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLXXXXXXXXXX 122
           N +SL+VKAASE DAT E DSSE QP A      VPVDKLPLESKLQER           
Sbjct: 62  NRSSLIVKAASEIDATVETDSSEPQPPA------VPVDKLPLESKLQEREEQKARMKLAK 121

Query: 123 XXXXXXXXXXXXXHLRKKGRWPPSKMKKLKNV 152
                  X     HLRKKGRWPPSKMKKLKNV
Sbjct: 122 KIRLRRKXLVQKRHLRKKGRWPPSKMKKLKNV 147

[Close]

BLAST of MELO3C019148.2 vs. NCBI nr
Match: XP_023543496.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.3 bits (386), Expect = 6.6e-34
Identity = 115/158 (72.78%), Postives = 120/158 (75.95%), Query Frame = 0


Query: 3   SFLLCSNPLSTSFH---------FSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLR 62
           +FLLCSNPLS S H                FP   A  +SMLLMKP GFQPK FNGVRLR
Sbjct: 2   AFLLCSNPLSISLHSXXXXXXXXXXXXXXXFPVNFAALNSMLLMKPTGFQPKHFNGVRLR 61

Query: 63  NHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLXXXX 122
           N  FVENT S  VKAASE DATGE DS+E +P+AEAKKEDVPVDKLPLESKLQER XXXX
Sbjct: 62  NPSFVENTVSFTVKAASEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERXXXXX 121

Query: 123 XXXXXXXXXXXXXXXXXXXHLRKKGRWPPSKMKKLKNV 152
           XXXXXXXXXXXXXXXXXXX    KGRWPPSKMKKLKNV
Sbjct: 122 XXXXXXXXXXXXXXXXXXXXXXXKGRWPPSKMKKLKNV 159

[Close]

BLAST of MELO3C019148.2 vs. TAIR10
Match: AT3G56910.1 (plastid-specific 50S ribosomal protein 5)

HSP 1 Score: 42.4 bits (98), Expect = 3.0e-04
Identity = 66/125 (52.80%), Postives = 77/125 (61.60%), Query Frame = 0


Query: 32  SSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKK 91
           S +L +KP   + K  N V L  +    +   +VVKAA    A+G +D +E +   E K 
Sbjct: 31  SPVLSLKPNAVESK--NRVSLSAYSLNSSHGRIVVKAA----ASG-VDGAEPESKEEPKT 90

Query: 92  --EDVPVDKLPLESKLQER---LXXXXXXXXXXXXXXXXXXXXXXXHLRKKGRWPPSKMK 151
               VPVDKLPLESK  +    L XXXXXXXXXXXXXXXXXXXXXX     GRWPPSKMK
Sbjct: 91  VVAAVPVDKLPLESKEAKEKLLLEXXXXXXXXXXXXXXXXXXXXXXXXXXXGRWPPSKMK 148

[Close]

BLAST of MELO3C019148.2 vs. TrEMBL
Match: tr|A0A1S3C2X0|A0A1S3C2X0_CUCME (50S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 5.5e-61
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVEN 60
           MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVEN
Sbjct: 1   MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVEN 60

Query: 61  TASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLXXXXXXXXXXX 120
           TASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLXXXXXXXXXXX
Sbjct: 61  TASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXHLRKKGRWPPSKMKKLKNV 152
           XXXXXXXXXXXXHLRKKGRWPPSKMKKLKNV
Sbjct: 121 XXXXXXXXXXXXHLRKKGRWPPSKMKKLKNV 151

[Close]

BLAST of MELO3C019148.2 vs. TrEMBL
Match: tr|A0A0A0L3F4|A0A0A0L3F4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 7.2e-53
Identity = 143/153 (93.46%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MASFLLCSNPLSTSFHFST--LHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFV 60
           MASFLL SNPLSTSFHFST     CFPPTSAIPSSMLLMKPIGFQPK FNGVRLRNH FV
Sbjct: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60

Query: 61  ENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLXXXXXXXXX 120
           ENTASLVVKAASETDATGE DSS+VQPAAEAKKEDVPVDKLPLESKLQERLXXXXXXXXX
Sbjct: 61  ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXHLRKKGRWPPSKMKKLKNV 152
           XXXXXXXXXXXXXXHLRKKGRWPPSKMKKLKNV
Sbjct: 121 XXXXXXXXXXXXXXHLRKKGRWPPSKMKKLKNV 153

[Close]

BLAST of MELO3C019148.2 vs. TrEMBL
Match: tr|M5X0Y9|M5X0Y9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G065900 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.2e-13
Identity = 79/119 (66.39%), Postives = 88/119 (73.95%), Query Frame = 0


Query: 33  SMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKE 92
           S L +KP    PK+F+GV LR  P V+   S+V KA+S+ D T    SSE  P ++ KKE
Sbjct: 37  SRLRLKPTDAHPKSFSGVCLR-MPAVKRFPSVVGKASSDIDGTSPTQSSE--PVSDTKKE 96

Query: 93  DVPVDKLPLESKLQERLXXXXXXXXXXXXXXXXXXXXXXXHLRKKGRWPPSKMKKLKNV 152
            VPVDKLPLESKLQER XXXXXXXXXXXXXXXXXXXXXXX     GRWPPSKMKKLKNV
Sbjct: 97  VVPVDKLPLESKLQERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRWPPSKMKKLKNV 152

[Close]

BLAST of MELO3C019148.2 vs. TrEMBL
Match: tr|A0A2K1X9S4|A0A2K1X9S4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G027600v3 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.2e-13
Identity = 85/150 (56.67%), Postives = 102/150 (68.00%), Query Frame = 0


Query: 5   LLCSNPLSTSFHFSTLHPCFPPTSAI---PSSMLLMKPIGFQPKTFNGVRLRNHPFVENT 64
           LL SNPL++    S+L P   PT A    P S L +K    + KT+NGVR +N       
Sbjct: 3   LLLSNPLTS---LSSLPPFSSPTLAFIATPVSRLDVKGFELKFKTWNGVRFQNPIRGNRI 62

Query: 65  ASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLXXXXXXXXXXXX 124
            +++V+A+S+ D T   ++SE  P  E+K+E V VDKLPLESKLQER XXXXXXXXXXXX
Sbjct: 63  GAVIVRASSDIDGTAPTETSE--PPVESKEEVVAVDKLPLESKLQERXXXXXXXXXXXXX 122

Query: 125 XXXXXXXXXXXHLRKKGRWPPSKMKKLKNV 152
           XXXXXXXXXXX     GRWPPSKMKKLKNV
Sbjct: 123 XXXXXXXXXXXXXXXXGRWPPSKMKKLKNV 147

[Close]

BLAST of MELO3C019148.2 vs. TrEMBL
Match: tr|V4SSM9|V4SSM9_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013047mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.8e-11
Identity = 74/124 (59.68%), Postives = 84/124 (67.74%), Query Frame = 0


Query: 28  SAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAA 87
           +A P S L  K I   PK+ NGV            +++VKA+S+ D T   D  E  P +
Sbjct: 24  AACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDIDGTAPTDGGE--PPS 83

Query: 88  EAKKEDVPVDKLPLESKLQERLXXXXXXXXXXXXXXXXXXXXXXXHLRKKGRWPPSKMKK 147
           ++ KE VPVDKLPLESK QER XXXXXXXXXXXXXXXXXXXXXXX    KGRWPPSKMKK
Sbjct: 84  DSTKEVVPVDKLPLESKTQERXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGRWPPSKMKK 143

Query: 148 LKNV 152
           LKNV
Sbjct: 144 LKNV 145

The following BLAST results are available for this feature:

BLAST of MELO3C019148.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455762.1	8.3e-61	100.00	PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo]	[more]
XP_004144312.1	1.1e-52	93.46	PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis sativus] >KGN54666.1 ...	[more]
XP_022154476.1	3.2e-36	75.00	50S ribosomal protein 5, chloroplastic [Momordica charantia]	[more]
XP_023518173.1	5.1e-34	62.50	50S ribosomal protein 5, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_023543496.1	6.6e-34	72.78	50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C019148.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G56910.1	3.0e-04	52.80	plastid-specific 50S ribosomal protein 5	[more]

BLAST of MELO3C019148.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C019148.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C2X0\|A0A1S3C2X0_CUCME	5.5e-61	100.00	50S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 P...	[more]
tr\|A0A0A0L3F4\|A0A0A0L3F4_CUCSA	7.2e-53	93.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1	[more]
tr\|M5X0Y9\|M5X0Y9_PRUPE	4.2e-13	66.39	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G065900 PE=4 SV=1	[more]
tr\|A0A2K1X9S4\|A0A2K1X9S4_POPTR	7.2e-13	56.67	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G027600v3 PE=...	[more]
tr\|V4SSM9\|V4SSM9_9ROSI	6.8e-11	59.68	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013047mg PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0032544	plastid translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0044434	chloroplast part
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019148.2.1	MELO3C019148.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..151
None	No IPR available	PANTHER	PTHR34678	FAMILY NOT NAMED	coord: 5..151
None	No IPR available	PRODOM	PD031914		coord: 49..151 e-value: 2.0E-7 score: 127.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C019148.2	Csa4G419580	Cucumber (Chinese Long) v2	cumedB320
MELO3C019148.2	CSPI04G18780	Wild cucumber (PI 183967)	cpimedB323
MELO3C019148.2	Cucsa.358680	Cucumber (Gy14) v1	cgymedB579
MELO3C019148.2	CmaCh03G001660	Cucurbita maxima (Rimu)	cmamedB697
MELO3C019148.2	CmaCh07G011140	Cucurbita maxima (Rimu)	cmamedB902
MELO3C019148.2	CmoCh07G011620	Cucurbita moschata (Rifu)	cmomedB891
MELO3C019148.2	CmoCh03G001950	Cucurbita moschata (Rifu)	cmomedB690
MELO3C019148.2	Lsi01G017450	Bottle gourd (USVL1VR-Ls)	lsimedB165
MELO3C019148.2	Cp4.1LG19g02400	Cucurbita pepo (Zucchini)	cpemedB545
MELO3C019148.2	Cp4.1LG10g10660	Cucurbita pepo (Zucchini)	cpemedB093
MELO3C019148.2	CsGy4G017830	Cucumber (Gy14) v2	cgybmedB286
MELO3C019148.2	Cla012071	Watermelon (97103) v1	medwmB566
MELO3C019148.2	ClCG04G005980	Watermelon (Charleston Gray)	medwcgB523
MELO3C019148.2	Cla97C04G072560	Watermelon (97103) v2	medwmbB527
MELO3C019148.2	Bhi03G002083	Wax gourd	medwgoB647
MELO3C019148.2	Carg26126	Silver-seed gourd	carmedB0951
MELO3C019148.2	Carg13326	Silver-seed gourd	carmedB0592
MELO3C019148.2	CsaV3_4G029150	Cucumber (Chinese Long) v3	cucmedB330

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None