Cp4.1LG10g10660 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g10660
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description50S ribosomal protein 5, chloroplastic
LocationCp4.1LG10 : 6695258 .. 6696992 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATAGCTTATCCAAAGGCAGCGAGGGGCTCTCAAACCAGAGAAAAACACGATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCATCTCTCTCCATTCATCTACATTTTCGCCGTCGCCATCGCCATCGCCGTCGCCGTCATGTTTTCCAGTGAATTTCGCCGCCCTGAGTAAGTATCTTCCGCTTCCCTTCCTGAACCTTCCTTTCCGCGCCTCTGTTTGACGGGATCGAACCTAACCCCCATGTTTTTGTCTAATTCTGTATATTCATTTCTCTTTGTTCTAAAGTTTTTTCGCTGCGTGTTCATTTTCACGAACTTGAGAAACTATTTTTCTGTGCTTGATTGAAAGACTTTCCTCGCAGTCATTTTTCTTTTGTCAGGCATTTTCAAAACAGTTGGTATCTGTGTGTAGAGACTGTCGATTTTCCCTTTCCTGATTTTGTATGCTGAATGTTCTGTTACTTGTTCATCATCCTCAATTTGATGTCTAGATTACAGTTTCGTAGTCATGAAATGCGGTTGAATGTGTGTCACTAAACCGAAGAGAGATTGTTTGGAGTGAATGTCATCTTTTATGCATATTCTTAATCCGTTTGAATGTTAATTTGATTCATGTAATGCCGAATAGGAGAAATTAGCATTATAAGCATTCCTAGTATCCCATGGTTTGATAGACAACAATTTAAAAAATGAACTTAATCAAATGCTTGAGCGGATAGGTTAGAAGATATTTAACCTCTGGTTATATTATGAGCTTGTTGGTGAAACTTTAACTTTGATTATATGTGGTAGATCCTTGAACTTTAAAAGAAATCTCTAGTGGATTTCAACATATTAACTAGTCCTAAACTATTATCTGTGTTTAATTGGTCTTGAACATTAAAAACGTCTCAAATATCAAGGCTTATTTGACACAAAATTAAAAGAATAGAATTTGTTAGATACTTTTTGAAACTAAAGGTTCTATTAGACACAATTCTTAAAGCTTAGAGATCAAAGTCATACATATTCTTGGCTTGGAATGGTTAATTCCCTACATTTTATGTATCTTAGCTCAATTTCCACTCCTTTATTGTGGTTTCCATTTCAGATTCTATGTTACTCATGAAGCCTACTGGGTTTCAGCCAAAACACTTCAATGGGGTTAGACTTCGAAACCCCTCCTTCGTTGAAAATACGGTGTCATTTACTGTCAAGGCTGCATCTGAGATCGATGCTACGGGAGAAACCGACAGTAACGAACCGAAGCCCTCGGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGACAAACTTCCATTAGAATCAAAACTGCAAGAGAGGCTGGAGCAGAAGGCAAGGATGAAGTTGGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCGGAAACGCCATTTGAGGAAGAAAGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAACGTTTGACAATCTTCAGCTCCTTCAATTCTTGCAGGTTTAGAGGTGACCCCATTTCTCCTCATTGCTTCCAACTTTCTCTGTCTAATTTCTTTATACTTTCATGAAAATGTACTTGCTTCATTATGTATCTGAAAGAACCCAGTGAGTGATGAAATGTGCAAATTGTGCTCTTAGTTTTGAATGACTAACGGTCAGTTGAAAGGAACTGAATACTTGCCTCTAGACTTTGGTTAGAACATTCAACTTCCCATCATATAGAGCTTGCTAAAAAACCTTGCACAAAGGCCAT

mRNA sequence

CATAGCTTATCCAAAGGCAGCGAGGGGCTCTCAAACCAGAGAAAAACACGATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCATCTCTCTCCATTCATCTACATTTTCGCCGTCGCCATCGCCATCGCCGTCGCCGTCATGTTTTCCAGTGAATTTCGCCGCCCTGAATTCTATGTTACTCATGAAGCCTACTGGGTTTCAGCCAAAACACTTCAATGGGGTTAGACTTCGAAACCCCTCCTTCGTTGAAAATACGGTGTCATTTACTGTCAAGGCTGCATCTGAGATCGATGCTACGGGAGAAACCGACAGTAACGAACCGAAGCCCTCGGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGACAAACTTCCATTAGAATCAAAACTGCAAGAGAGGCTGGAGCAGAAGGCAAGGATGAAGTTGGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCGGAAACGCCATTTGAGGAAGAAAGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAACGTTTGACAATCTTCAGCTCCTTCAATTCTTGCAGGTTTAGAGGTGACCCCATTTCTCCTCATTGCTTCCAACTTTCTCTGTCTAATTTCTTTATACTTTCATGAAAATGTACTTGCTTCATTATGTATCTGAAAGAACCCAGTGAGTGATGAAATGTGCAAATTGTGCTCTTAGTTTTGAATGACTAACGGTCAGTTGAAAGGAACTGAATACTTGCCTCTAGACTTTGGTTAGAACATTCAACTTCCCATCATATAGAGCTTGCTAAAAAACCTTGCACAAAGGCCAT

Coding sequence (CDS)

ATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCATCTCTCTCCATTCATCTACATTTTCGCCGTCGCCATCGCCATCGCCGTCGCCGTCATGTTTTCCAGTGAATTTCGCCGCCCTGAATTCTATGTTACTCATGAAGCCTACTGGGTTTCAGCCAAAACACTTCAATGGGGTTAGACTTCGAAACCCCTCCTTCGTTGAAAATACGGTGTCATTTACTGTCAAGGCTGCATCTGAGATCGATGCTACGGGAGAAACCGACAGTAACGAACCGAAGCCCTCGGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGACAAACTTCCATTAGAATCAAAACTGCAAGAGAGGCTGGAGCAGAAGGCAAGGATGAAGTTGGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCGGAAACGCCATTTGAGGAAGAAAGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAACGTTTGA

Protein sequence

MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFTVKAASEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Homology
[Close]
BLAST of Cp4.1LG10g10660 vs. Swiss-Prot
Match: PSRP5_ARATH (50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.3e-15
Identity = 80/160 (50.00%), Postives = 91/160 (56.88%), Query Frame = 1 

Query: 4   LLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRLRNP 63
           LLC N L  SL S + S S     SPS     FA+   +L +KP   + K  N V L   
Sbjct: 3   LLCFNSLP-SLSSLSSSSSSRLLQSPS-----FAS--PVLSLKPNAVESK--NRVSLSAY 62

Query: 64  SFVENTVSFTVKAA-SEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQER---LEQ 123
           S   +     VKAA S +D        EPK    A    VPVDKLPLESK  +    LE 
Sbjct: 63  SLNSSHGRIVVKAAASGVDGAEPESKEEPKTVVAA----VPVDKLPLESKEAKEKLLLEL 122

Query: 124 KARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 160
           + +MKLAKKIRLRRKRLVRKR +RKKGRWPPSKMKK KNV
Sbjct: 123 RLKMKLAKKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

[Close]
BLAST of Cp4.1LG10g10660 vs. Swiss-Prot
Match: PSRP5_PEA (50S ribosomal protein 5, chloroplastic OS=Pisum sativum GN=PSRP5 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.5e-13
Identity = 70/160 (43.75%), Postives = 93/160 (58.13%), Query Frame = 1 

Query: 4   LLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRLRNP 63
           LLC N  + +  +S+ S  P P+ +P         ++ + +  PT        G R+  P
Sbjct: 3   LLCFNSFTTTPVTSSSSLFPHPTANP---------ISRVRIGLPTNC----LKGFRILTP 62

Query: 64  SFVENTVSFTVKAASEIDATGETDSN--EPKPSAEAKKED--VPVDKLPLESKLQERLEQ 123
             V+     ++  AS   A    DSN  +    +E+KKE   V VDKLPLESKL+ER E+
Sbjct: 63  -IVQKPRKNSIFIAS---AAAGADSNVADGVEESESKKESDVVSVDKLPLESKLKEREER 122

Query: 124 KARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 160
             +MKLAKKIRL+RKRLV+KR LRKKG WPPSKMKKL+ V
Sbjct: 123 MLKMKLAKKIRLKRKRLVQKRRLRKKGNWPPSKMKKLEGV 145

[Close]
BLAST of Cp4.1LG10g10660 vs. Swiss-Prot
Match: PSRP5_SPIOL (50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.5e-11
Identity = 61/157 (38.85%), Postives = 81/157 (51.59%), Query Frame = 1 

Query: 10  LSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENT 69
           LS  L  S+  P  S + S S FP+    ++  LL                  PSF +  
Sbjct: 4   LSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALL------------------PSFGQRL 63

Query: 70  VSFTVKAASE-------IDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQKAR 129
           V+     A +       + A  E  + E    ++ ++ ++ V  LPLESKLQ +LEQK +
Sbjct: 64  VAHGPVIAQKRGTVVAMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIK 123

Query: 130 MKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 160
           MK+AKKIRLRR  L  K  LRK+G WPPSKMKKLKNV
Sbjct: 124 MKMAKKIRLRRTGLCAKESLRKRGAWPPSKMKKLKNV 142

[Close]
BLAST of Cp4.1LG10g10660 vs. TrEMBL
Match: A0A0A0L3F4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G419580 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.5e-55
Identity = 128/158 (81.01%), Postives = 135/158 (85.44%), Query Frame = 1 

Query: 2   AFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRLR 61
           +FLL SNPLS S H ST       SPSPSCFP   A  +SMLLMKP GFQPKHFNGVRLR
Sbjct: 3   SFLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLR 62

Query: 62  NPSFVENTVSFTVKAASEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQKA 121
           N SFVENT S  VKAASE DATGETDS++ +P+AEAKKEDVPVDKLPLESKLQERLEQKA
Sbjct: 63  NHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKA 122

Query: 122 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 160
           RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]
BLAST of Cp4.1LG10g10660 vs. TrEMBL
Match: M5X0Y9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012848mg PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-30
Identity = 99/159 (62.26%), Postives = 114/159 (71.70%), Query Frame = 1 

Query: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRL 60
           M  LL SNPL ++  SS  S SP P+ S S       A+ S L +KPT   PK F+GV L
Sbjct: 1   MGLLLYSNPLPLTTASSR-SSSPFPTSSSSTAAT---AIFSRLRLKPTDAHPKSFSGVCL 60

Query: 61  RNPSFVENTVSFTVKAASEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQK 120
           R P+ V+   S   KA+S+ID T  T S+EP   ++ KKE VPVDKLPLESKLQERLEQK
Sbjct: 61  RMPA-VKRFPSVVGKASSDIDGTSPTQSSEPV--SDTKKEVVPVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 160
           A+M+LAKKIRLRRKRLVRKR LRKKGRWPPSKMKKLKNV
Sbjct: 121 AKMQLAKKIRLRRKRLVRKRKLRKKGRWPPSKMKKLKNV 152

[Close]
BLAST of Cp4.1LG10g10660 vs. TrEMBL
Match: W9S7L7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027931 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-24
Identity = 85/159 (53.46%), Postives = 102/159 (64.15%), Query Frame = 1 

Query: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRL 60
           MA ++C  P++ S  S++ S S S   S +  P       S L +KP    P  F+GVRL
Sbjct: 1   MALVVCFTPVTASPLSASSSSSSSSFLSATAIPTI-----SRLQIKPIDLHPNSFSGVRL 60

Query: 61  RNPSFVENTVSFTVKAASEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQK 120
           + P  V  + S  VKA+SE            +  ++ K+E V VDKLPLESKLQERLEQK
Sbjct: 61  QMPFVVSRSCSVVVKASSE----------SSEALSDGKEEAVSVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 160
            +MKLAKKIRLRRKRLVRKR LRKKGRWPPSKMKKLKNV
Sbjct: 121 LKMKLAKKIRLRRKRLVRKRRLRKKGRWPPSKMKKLKNV 144

[Close]
BLAST of Cp4.1LG10g10660 vs. TrEMBL
Match: A0A067EU38_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032202mg PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.2e-24
Identity = 87/159 (54.72%), Postives = 99/159 (62.26%), Query Frame = 1 

Query: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRL 60
           MA L+  NPL       +  PS S + + +  PV      S L  K     PK  NGV  
Sbjct: 1   MALLVSYNPLM------SLPPSSSSALAVAACPV------SRLHFKAIESHPKSSNGVWS 60

Query: 61  RNPSFVENTVSFTVKAASEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQK 120
             P       +  VKA+S+ID T  TD  EP   +++ KE VPVDKLPLESK QERLEQK
Sbjct: 61  CTPLVASKRGAVIVKASSDIDGTAPTDGGEPP--SDSTKEVVPVDKLPLESKTQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 160
            RMKLAKKIRLRRKRLVRKR +RKKGRWPPSKMKKLKNV
Sbjct: 121 MRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 145

[Close]
BLAST of Cp4.1LG10g10660 vs. TrEMBL
Match: V4SSM9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013047mg PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.2e-24
Identity = 87/159 (54.72%), Postives = 99/159 (62.26%), Query Frame = 1 

Query: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRL 60
           MA L+  NPL       +  PS S + + +  PV      S L  K     PK  NGV  
Sbjct: 1   MALLVSYNPLM------SLPPSSSSALAVAACPV------SRLHFKAIESHPKSSNGVWS 60

Query: 61  RNPSFVENTVSFTVKAASEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQK 120
             P       +  VKA+S+ID T  TD  EP   +++ KE VPVDKLPLESK QERLEQK
Sbjct: 61  CTPLVASKRGAVIVKASSDIDGTAPTDGGEPP--SDSTKEVVPVDKLPLESKTQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 160
            RMKLAKKIRLRRKRLVRKR +RKKGRWPPSKMKKLKNV
Sbjct: 121 MRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 145

[Close]
BLAST of Cp4.1LG10g10660 vs. TAIR10
Match: AT3G56910.1 (AT3G56910.1 plastid-specific 50S ribosomal protein 5)

HSP 1 Score: 81.6 bits (200), Expect = 4.7e-16
Identity = 80/160 (50.00%), Postives = 91/160 (56.88%), Query Frame = 1 

Query: 4   LLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRLRNP 63
           LLC N L  SL S + S S     SPS     FA+   +L +KP   + K  N V L   
Sbjct: 3   LLCFNSLP-SLSSLSSSSSSRLLQSPS-----FAS--PVLSLKPNAVESK--NRVSLSAY 62

Query: 64  SFVENTVSFTVKAA-SEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQER---LEQ 123
           S   +     VKAA S +D        EPK    A    VPVDKLPLESK  +    LE 
Sbjct: 63  SLNSSHGRIVVKAAASGVDGAEPESKEEPKTVVAA----VPVDKLPLESKEAKEKLLLEL 122

Query: 124 KARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 160
           + +MKLAKKIRLRRKRLVRKR +RKKGRWPPSKMKK KNV
Sbjct: 123 RLKMKLAKKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

[Close]
BLAST of Cp4.1LG10g10660 vs. NCBI nr
Match: gi|449453131|ref|XP_004144312.1| (PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 2.2e-55
Identity = 128/158 (81.01%), Postives = 135/158 (85.44%), Query Frame = 1 

Query: 2   AFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRLR 61
           +FLL SNPLS S H ST       SPSPSCFP   A  +SMLLMKP GFQPKHFNGVRLR
Sbjct: 3   SFLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLR 62

Query: 62  NPSFVENTVSFTVKAASEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQKA 121
           N SFVENT S  VKAASE DATGETDS++ +P+AEAKKEDVPVDKLPLESKLQERLEQKA
Sbjct: 63  NHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKA 122

Query: 122 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 160
           RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]
BLAST of Cp4.1LG10g10660 vs. NCBI nr
Match: gi|659111487|ref|XP_008455762.1| (PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 3.8e-52
Identity = 123/158 (77.85%), Postives = 129/158 (81.65%), Query Frame = 1 

Query: 2   AFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRLR 61
           +FLLCSNPLS S H ST  P         CFP   A  +SMLLMKP GFQPK FNGVRLR
Sbjct: 3   SFLLCSNPLSTSFHFSTLHP---------CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLR 62

Query: 62  NPSFVENTVSFTVKAASEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQKA 121
           N  FVENT S  VKAASE DATGE DS+E +P+AEAKKEDVPVDKLPLESKLQERLEQKA
Sbjct: 63  NHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKA 122

Query: 122 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 160
           RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 151

[Close]
BLAST of Cp4.1LG10g10660 vs. NCBI nr
Match: gi|645251834|ref|XP_008231856.1| (PREDICTED: 50S ribosomal protein 5, chloroplastic [Prunus mume])

HSP 1 Score: 147.1 bits (370), Expect = 2.6e-32
Identity = 101/159 (63.52%), Postives = 116/159 (72.96%), Query Frame = 1 

Query: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRL 60
           M  LL SNPL ++  SS  S SP P+ S S       A+ S L +KPT   PK F+GVRL
Sbjct: 1   MGLLLYSNPLPLTTASSR-SSSPFPTSSSSTAAT---AIFSRLHLKPTDAHPKSFSGVRL 60

Query: 61  RNPSFVENTVSFTVKAASEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQK 120
           R P+ V+   S  VKA+S+ID T  T+S+EP    + KKE VPVDKLPLESKLQERLEQK
Sbjct: 61  RMPA-VKRFASVVVKASSDIDGTSPTESSEPV--LDTKKEVVPVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 160
           A+M+LAKKIRLRRKRLVRKR LRKKGRWPPSKMKKLKNV
Sbjct: 121 AKMQLAKKIRLRRKRLVRKRKLRKKGRWPPSKMKKLKNV 152

[Close]
BLAST of Cp4.1LG10g10660 vs. NCBI nr
Match: gi|657950016|ref|XP_008345900.1| (PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Malus domestica])

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 96/160 (60.00%), Postives = 114/160 (71.25%), Query Frame = 1 

Query: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRL 60
           M  LL SNPL ++  SS   PS S SPSP+  P +F+A  S + MKP    PK F+GVRL
Sbjct: 1   MGLLLYSNPLPLTTASS---PSSSSSPSPTSSPSSFSATISWMHMKPNNLHPKSFSGVRL 60

Query: 61  RNPSFVENTVSFTVKAASEIDAT-GETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQ 120
             P  V+ + S  VKA+S+ID T    + +EP P ++ +   VPVDKLPLESKLQERLEQ
Sbjct: 61  HMP-VVKRSASVVVKASSDIDGTTAANEGSEPLPDSKGEAV-VPVDKLPLESKLQERLEQ 120

Query: 121 KARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 160
           K +M+LAKKIRLRR RLVRKR LRKKGRWPPSKMKKLKNV
Sbjct: 121 KKKMQLAKKIRLRRNRLVRKRKLRKKGRWPPSKMKKLKNV 155

[Close]
BLAST of Cp4.1LG10g10660 vs. NCBI nr
Match: gi|694328355|ref|XP_009354995.1| (PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-30
Identity = 94/160 (58.75%), Postives = 113/160 (70.62%), Query Frame = 1 

Query: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRL 60
           M  LL SNPL ++  S   S S S SP P+  P +F+A  S + MKP    PK F+GVRL
Sbjct: 1   MGLLLYSNPLPLTTASYPSSSSSSSSPPPTSSPSSFSATISSMHMKPNNLHPKCFSGVRL 60

Query: 61  RNPSFVENTVSFTVKAASEIDATGET-DSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQ 120
             P  V+ + S  VKA+S+ID T    + +EP P ++ ++  VPVDKLPLESKLQERLEQ
Sbjct: 61  HMP-VVKRSASVVVKASSDIDGTAAANEGSEPLPDSK-EEAVVPVDKLPLESKLQERLEQ 120

Query: 121 KARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 160
           K +M+LAKKIRLRR RLVRKR LRKKGRWPPSKMKKLKNV
Sbjct: 121 KKKMQLAKKIRLRRNRLVRKRKLRKKGRWPPSKMKKLKNV 158

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g10660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSRP5_ARATH8.3e-1550.0050S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana GN=PSRP5 PE=1 SV=... [more]
PSRP5_PEA3.5e-1343.7550S ribosomal protein 5, chloroplastic OS=Pisum sativum GN=PSRP5 PE=2 SV=1[more]
PSRP5_SPIOL5.5e-1138.8550S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea GN=PSRP5 PE=1 ... [more]
BLAST of Cp4.1LG10g10660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3F4_CUCSA1.5e-5581.01Uncharacterized protein OS=Cucumis sativus GN=Csa_4G419580 PE=4 SV=1[more]
M5X0Y9_PRUPE1.3e-3062.26Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012848mg PE=4 SV=1[more]
W9S7L7_9ROSA1.4e-2453.46Uncharacterized protein OS=Morus notabilis GN=L484_027931 PE=4 SV=1[more]
A0A067EU38_CITSI5.2e-2454.72Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032202mg PE=4 SV=1[more]
V4SSM9_9ROSI5.2e-2454.72Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013047mg PE=4 SV=1[more]
BLAST of Cp4.1LG10g10660 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G56910.14.7e-1650.00 plastid-specific 50S ribosomal protein 5[more]
BLAST of Cp4.1LG10g10660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453131|ref|XP_004144312.1|2.2e-5581.01PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis sativus][more]
gi|659111487|ref|XP_008455762.1|3.8e-5277.85PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo][more]
gi|645251834|ref|XP_008231856.1|2.6e-3263.52PREDICTED: 50S ribosomal protein 5, chloroplastic [Prunus mume][more]
gi|657950016|ref|XP_008345900.1|1.3e-3160.00PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Malus domestica][more]
gi|694328355|ref|XP_009354995.1|1.1e-3058.75PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0032544 plastid translation
cellular_component GO:0044434 chloroplast part
cellular_component GO:0009579 thylakoid
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g10660.1Cp4.1LG10g10660.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRODOMPD031914coord: 80..159
score: 6.
NoneNo IPR availablePANTHERPTHR34678FAMILY NOT NAMEDcoord: 4..159
score: 1.6
NoneNo IPR availablePANTHERPTHR34678:SF150S RIBOSOMAL PROTEIN 5, CHLOROPLASTICcoord: 4..159
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g10660Cucsa.358680Cucumber (Gy14) v1cgycpeB0933
Cp4.1LG10g10660CmaCh03G001660Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g10660CmaCh07G011140Cucurbita maxima (Rimu)cmacpeB867
Cp4.1LG10g10660CmoCh07G011620Cucurbita moschata (Rifu)cmocpeB807
Cp4.1LG10g10660CmoCh03G001950Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g10660Cla012071Watermelon (97103) v1cpewmB088
Cp4.1LG10g10660Csa4G419580Cucumber (Chinese Long) v2cpecuB072
Cp4.1LG10g10660MELO3C019148Melon (DHL92) v3.5.1cpemeB073
Cp4.1LG10g10660ClCG04G005980Watermelon (Charleston Gray)cpewcgB081
Cp4.1LG10g10660CSPI04G18780Wild cucumber (PI 183967)cpecpiB068
Cp4.1LG10g10660Lsi01G017450Bottle gourd (USVL1VR-Ls)cpelsiB048
Cp4.1LG10g10660MELO3C019148.2Melon (DHL92) v3.6.1cpemedB093
Cp4.1LG10g10660CsaV3_4G029150Cucumber (Chinese Long) v3cpecucB0078
Cp4.1LG10g10660Bhi03G002083Wax gourdcpewgoB0102
Cp4.1LG10g10660CsGy4G017830Cucumber (Gy14) v2cgybcpeB466
Cp4.1LG10g10660Carg26126Silver-seed gourdcarcpeB1338
Cp4.1LG10g10660Carg13326Silver-seed gourdcarcpeB0827
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG10g10660Cp4.1LG19g02400Cucurbita pepo (Zucchini)cpecpeB077
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g10660Cucurbita maxima (Rimu)cmacpeB255
Cp4.1LG10g10660Cucurbita moschata (Rifu)cmocpeB219
Cp4.1LG10g10660Cucumber (Chinese Long) v2cpecuB066
Cp4.1LG10g10660Cucumber (Gy14) v2cgybcpeB293
Cp4.1LG10g10660Melon (DHL92) v3.6.1cpemedB074
Cp4.1LG10g10660Silver-seed gourdcarcpeB0349
Cp4.1LG10g10660Cucumber (Chinese Long) v3cpecucB0072