CmaCh07G011140 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh07G011140
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	50S ribosomal protein 5, chloroplastic
Location	Cma_Chr07 : 6046971 .. 6048772 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGGCTGCCGGAGAAAACACCATGGCTTTACTTCTCTGCTCCAATCCCGTCTCCACCTCTCTCCCTTCATCACTATTTCCGCTGTCGCCGTCATGTTTCCCGATGAACTCCGCCGCCCAATGTACGCCTATCTTTCTCTCCCCCTCCCGGATTTCCTTTACCGCCTCTTTGTTCGATACGATCGAACGAATGCTTTTGTCTAATTCTGTAACTTCATTTCTCTTTTTACTTTATTCTTTTTGCTGCGTGTTAATGCAAATGAAGAGTTTCGTTTTCACGAACACGAAGACTTGTTTTATGTACTTGAAGGAATTGTTTGTAGTCATTTGTTTGTCAGGCATTTTGTCAAGCAGTTAGTATCTGTGTGTTAGAGGCTTTTGATTTTACGCTTTTAAGTTGATGTGCACTGAATTTCTATTTCCTGAGTGTGTTTTTTTTTTTTTTCTGTAACTTGTGTTTTAAATGCTGAATGATCTGCTTCCTGTTCATCACCCTCAATTTTACGTGGTTACGGTGGAGAATAGTTGGGAGGAAGTCTAAAAAATTTGCTAAGTAAGGGAATGATCATGGATTTATAAGTAAGAAATACATCGGTAGAGAGTAGTGATTTCTAACATGGTATTAGGGTCATCTCCTTAACCTAGTTACGTTAATAGAATCCTCAAATGTCAAATAAAGAAGTTGGGACCCTCAAAAGCATAGTCAAAGTTGTTGGATGATGAAAGTCCCACATCGGTTAATTTAGGGAATGATCATGGGTTTATAATCTAAGAATACACTCTCCATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGTAAAGCCATGAGAGCTTACGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAACAAAAGTGACTCAAGTGTCGAACAAAGGGTGTACTTTGTTCGAGGGGAGTCTCTATAGTATACTTTGTTCGAGGGAAGGATTGTTGGGAGGGTATCAGACATTGGCTAATTAAGAGAATAATCATGGGTTGGTGATTTCTAAGAAACAACTTTTGCAATATAACCTCAATCTTTGGCTTTAATTTGAATGACTGTTCCCCTCCTTTTTTATAATGTATCTTGGCTCAATTTCCTCTACTTTGCTGTTTAAATTTCAGGTTCTATGTTGTTCATGAAGCCTAATGTGTTTCAGCCAAAACATTTCAATGGAGTTGGACTTCGAAACCCCTCTTTGATTGAAAATAGATCGTCATTGATTGTGAAAGCTGCGTCTGAGATTGATGCTACGGTAGAAACAGACAGTAGTGAACCACAGCCCCCTGCAGTTCCAGTTGACAAACTTCCATTAGAATCAAAGCTGCAAGAGAGGGAGGAGCAGAAGGCAAGGATGAAGCTAGCAAAGAAGATAAGACTTCGGAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCTTCAAAGATGAAGAAATTGAAGAATGTTTGATAACCAAGCTCCTTCAGCTATTGCAGGTTTAGAGCTTTACCCACTTCTCATTACTTCTAATTTGTTTATACTTTAATGAAAACGTTCTTGCTTCTTTTTATATCTGAAAGAAATCAATGAGTGATGGAATATGAAACTTGTGGGTAGATTTGAATGTCTAATGTTGAGTTCAAAGGTATTCTGTACAGTTTTCAACAGACATAGGCAATTTCTTAGGGATTTAGACACGTGAAATTGGTTCAGAAGACTGTTTTATTCCTTTAAATGTACTAAAAAGATGTATTCTTGTTTCTCCAATGAGGCACGTCTGAGTCAAT

mRNA sequence

GCGGCTGCCGGAGAAAACACCATGGCTTTACTTCTCTGCTCCAATCCCGTCTCCACCTCTCTCCCTTCATCACTATTTCCGCTGTCGCCGTCATGTTTCCCGATGAACTCCGCCGCCCAATGTTCTATGTTGTTCATGAAGCCTAATGTGTTTCAGCCAAAACATTTCAATGGAGTTGGACTTCGAAACCCCTCTTTGATTGAAAATAGATCGTCATTGATTGTGAAAGCTGCGTCTGAGATTGATGCTACGGTAGAAACAGACAGTAGTGAACCACAGCCCCCTGCAGTTCCAGTTGACAAACTTCCATTAGAATCAAAGCTGCAAGAGAGGGAGGAGCAGAAGGCAAGGATGAAGCTAGCAAAGAAGATAAGACTTCGGAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCTTCAAAGATGAAGAAATTGAAGAATGTTTGATAACCAAGCTCCTTCAGCTATTGCAGGTTTAGAGCTTTACCCACTTCTCATTACTTCTAATTTGTTTATACTTTAATGAAAACGTTCTTGCTTCTTTTTATATCTGAAAGAAATCAATGAGTGATGGAATATGAAACTTGTGGGTAGATTTGAATGTCTAATGTTGAGTTCAAAGGTATTCTGTACAGTTTTCAACAGACATAGGCAATTTCTTAGGGATTTAGACACGTGAAATTGGTTCAGAAGACTGTTTTATTCCTTTAAATGTACTAAAAAGATGTATTCTTGTTTCTCCAATGAGGCACGTCTGAGTCAAT

Coding sequence (CDS)

ATGGCTTTACTTCTCTGCTCCAATCCCGTCTCCACCTCTCTCCCTTCATCACTATTTCCGCTGTCGCCGTCATGTTTCCCGATGAACTCCGCCGCCCAATGTTCTATGTTGTTCATGAAGCCTAATGTGTTTCAGCCAAAACATTTCAATGGAGTTGGACTTCGAAACCCCTCTTTGATTGAAAATAGATCGTCATTGATTGTGAAAGCTGCGTCTGAGATTGATGCTACGGTAGAAACAGACAGTAGTGAACCACAGCCCCCTGCAGTTCCAGTTGACAAACTTCCATTAGAATCAAAGCTGCAAGAGAGGGAGGAGCAGAAGGCAAGGATGAAGCTAGCAAAGAAGATAAGACTTCGGAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCTTCAAAGATGAAGAAATTGAAGAATGTTTGA

Protein sequence

MALLLCSNPVSTSLPSSLFPLSPSCFPMNSAAQCSMLFMKPNVFQPKHFNGVGLRNPSLIENRSSLIVKAASEIDATVETDSSEPQPPAVPVDKLPLESKLQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Homology

[Close]

BLAST of CmaCh07G011140 vs. Swiss-Prot
Match: PSRP5_ARATH (50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-17
Identity = 76/152 (50.00%), Postives = 92/152 (60.53%), Query Frame = 1


Query: 4   LLCSNPVSTSLPS--SLFPLSPSCFPMNSAAQCSMLFMKPNVFQPKHFNGVGLRNPSLIE 63
           LLC N    SLPS  SL   S S    + +    +L +KPN  + K  N V L   SL  
Sbjct: 3   LLCFN----SLPSLSSLSSSSSSRLLQSPSFASPVLSLKPNAVESK--NRVSLSAYSLNS 62

Query: 64  NRSSLIVKAA-SEIDATVETDSSEPQP--PAVPVDKLPLESKLQERE---EQKARMKLAK 123
           +   ++VKAA S +D        EP+    AVPVDKLPLESK  + +   E + +MKLAK
Sbjct: 63  SHGRIVVKAAASGVDGAEPESKEEPKTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAK 122

Query: 124 KIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 148
           KIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Sbjct: 123 KIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

[Close]

BLAST of CmaCh07G011140 vs. Swiss-Prot
Match: PSRP5_PEA (50S ribosomal protein 5, chloroplastic OS=Pisum sativum GN=PSRP5 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.3e-16
Identity = 71/151 (47.02%), Postives = 90/151 (59.60%), Query Frame = 1


Query: 4   LLCSNPVSTSLPSSLFPLSPSCFPMNSAAQCSMLFMKPNVFQPKH-FNGVGLRNPSLIEN 63
           LLC N  +T+  +S    S S FP  +A   S +     +  P +   G  +  P + + 
Sbjct: 3   LLCFNSFTTTPVTS----SSSLFPHPTANPISRV----RIGLPTNCLKGFRILTPIVQKP 62

Query: 64  R--SSLIVKAASEIDATV----ETDSSEPQPPAVPVDKLPLESKLQEREEQKARMKLAKK 123
           R  S  I  AA+  D+ V    E   S+ +   V VDKLPLESKL+EREE+  +MKLAKK
Sbjct: 63  RKNSIFIASAAAGADSNVADGVEESESKKESDVVSVDKLPLESKLKEREERMLKMKLAKK 122

Query: 124 IRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 148
           IRL+RKRLVQKR LRKKG WPPSKMKKL+ V
Sbjct: 123 IRLKRKRLVQKRRLRKKGNWPPSKMKKLEGV 145

[Close]

BLAST of CmaCh07G011140 vs. Swiss-Prot
Match: PSRP5_SPIOL (50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.6e-12
Identity = 63/149 (42.28%), Postives = 86/149 (57.72%), Query Frame = 1


Query: 1   MALLLCSNPVSTSLPSSLFPLSPSCFPMNSAAQCSMLFMKPNVFQPKHFNGVGLRNPSLI 60
           MALL     +S+  P +   +S S FP+    Q   + + P+  Q    +G     P + 
Sbjct: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIK--LQNVSVALLPSFGQRLVAHG-----PVIA 60

Query: 61  ENRSSLI--VKAASEIDATVETDSSEPQPPAVPVDKLPLESKLQEREEQKARMKLAKKIR 120
           + R +++  V AA+E  A  + D S+ +   + V  LPLESKLQ + EQK +MK+AKKIR
Sbjct: 61  QKRGTVVAMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIR 120

Query: 121 LRRKRLVQKRHLRKKGRWPPSKMKKLKNV 148
           LRR  L  K  LRK+G WPPSKMKKLKNV
Sbjct: 121 LRRTGLCAKESLRKRGAWPPSKMKKLKNV 142

[Close]

BLAST of CmaCh07G011140 vs. TrEMBL
Match: A0A0A0L3F4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G419580 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.2e-45
Identity = 115/152 (75.66%), Postives = 121/152 (79.61%), Query Frame = 1


Query: 2   ALLLCSNPVSTSLPSSLFPLSPSCFPMNSAAQCSMLFMKPNVFQPKHFNGVGLRNPSLIE 61
           + LL SNP+STS   S  P SPSCFP  SA   SML MKP  FQPKHFNGV LRN S +E
Sbjct: 3   SFLLSSNPLSTSFHFSTSP-SPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVE 62

Query: 62  NRSSLIVKAASEIDATVETDSSEPQPPA------VPVDKLPLESKLQEREEQKARMKLAK 121
           N +SL+VKAASE DAT ETDSS+ QP A      VPVDKLPLESKLQER EQKARMKLAK
Sbjct: 63  NTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAK 122

Query: 122 KIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 148
           KIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 KIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]

BLAST of CmaCh07G011140 vs. TrEMBL
Match: M5X0Y9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012848mg PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-27
Identity = 91/156 (58.33%), Postives = 109/156 (69.87%), Query Frame = 1


Query: 1   MALLLCSNPVSTSLPSSLFPLSPSCFPMNSAAQC-----SMLFMKPNVFQPKHFNGVGLR 60
           M LLL SNP+  +  SS    S S FP +S++       S L +KP    PK F+GV LR
Sbjct: 1   MGLLLYSNPLPLTTASSR---SSSPFPTSSSSTAATAIFSRLRLKPTDAHPKSFSGVCLR 60

Query: 61  NPSLIENRSSLIVKAASEIDATVETDSSEP----QPPAVPVDKLPLESKLQEREEQKARM 120
            P+ ++   S++ KA+S+ID T  T SSEP    +   VPVDKLPLESKLQER EQKA+M
Sbjct: 61  MPA-VKRFPSVVGKASSDIDGTSPTQSSEPVSDTKKEVVPVDKLPLESKLQERLEQKAKM 120

Query: 121 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 148
           +LAKKIRLRRKRLV+KR LRKKGRWPPSKMKKLKNV
Sbjct: 121 QLAKKIRLRRKRLVRKRKLRKKGRWPPSKMKKLKNV 152

[Close]

BLAST of CmaCh07G011140 vs. TrEMBL
Match: A0A067EU38_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032202mg PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.8e-26
Identity = 85/151 (56.29%), Postives = 99/151 (65.56%), Query Frame = 1


Query: 1   MALLLCSNPVSTSLPSSLFPLSPSCFPMNSAAQCSMLFMKPNVFQPKHFNGVGLRNPSLI 60
           MALL+  NP+ +  PSS   L+ +  P+      S L  K     PK  NGV    P + 
Sbjct: 1   MALLVSYNPLMSLPPSSSSALAVAACPV------SRLHFKAIESHPKSSNGVWSCTPLVA 60

Query: 61  ENRSSLIVKAASEIDATVETDSSEPQPPA----VPVDKLPLESKLQEREEQKARMKLAKK 120
             R ++IVKA+S+ID T  TD  EP   +    VPVDKLPLESK QER EQK RMKLAKK
Sbjct: 61  SKRGAVIVKASSDIDGTAPTDGGEPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKK 120

Query: 121 IRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 148
           IRLRRKRLV+KR +RKKGRWPPSKMKKLKNV
Sbjct: 121 IRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 145

[Close]

BLAST of CmaCh07G011140 vs. TrEMBL
Match: V4SSM9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013047mg PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.8e-26
Identity = 85/151 (56.29%), Postives = 99/151 (65.56%), Query Frame = 1


Query: 1   MALLLCSNPVSTSLPSSLFPLSPSCFPMNSAAQCSMLFMKPNVFQPKHFNGVGLRNPSLI 60
           MALL+  NP+ +  PSS   L+ +  P+      S L  K     PK  NGV    P + 
Sbjct: 1   MALLVSYNPLMSLPPSSSSALAVAACPV------SRLHFKAIESHPKSSNGVWSCTPLVA 60

Query: 61  ENRSSLIVKAASEIDATVETDSSEPQPPA----VPVDKLPLESKLQEREEQKARMKLAKK 120
             R ++IVKA+S+ID T  TD  EP   +    VPVDKLPLESK QER EQK RMKLAKK
Sbjct: 61  SKRGAVIVKASSDIDGTAPTDGGEPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKK 120

Query: 121 IRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 148
           IRLRRKRLV+KR +RKKGRWPPSKMKKLKNV
Sbjct: 121 IRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 145

[Close]

BLAST of CmaCh07G011140 vs. TrEMBL
Match: W9S7L7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027931 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.7e-24
Identity = 81/148 (54.73%), Postives = 97/148 (65.54%), Query Frame = 1


Query: 1   MALLLCSNPVSTS-LPSSLFPLSPSCFPMNSAAQCSMLFMKPNVFQPKHFNGVGLRNPSL 60
           MAL++C  PV+ S L +S    S S     +    S L +KP    P  F+GV L+ P +
Sbjct: 1   MALVVCFTPVTASPLSASSSSSSSSFLSATAIPTISRLQIKPIDLHPNSFSGVRLQMPFV 60

Query: 61  IENRSSLIVKAASEIDATVETDSSEPQPPAVPVDKLPLESKLQEREEQKARMKLAKKIRL 120
           +    S++VKA+SE    +     E    AV VDKLPLESKLQER EQK +MKLAKKIRL
Sbjct: 61  VSRSCSVVVKASSESSEALSDGKEE----AVSVDKLPLESKLQERLEQKLKMKLAKKIRL 120

Query: 121 RRKRLVQKRHLRKKGRWPPSKMKKLKNV 148
           RRKRLV+KR LRKKGRWPPSKMKKLKNV
Sbjct: 121 RRKRLVRKRRLRKKGRWPPSKMKKLKNV 144

[Close]

BLAST of CmaCh07G011140 vs. TAIR10
Match: AT3G56910.1 (AT3G56910.1 plastid-specific 50S ribosomal protein 5)

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-18
Identity = 76/152 (50.00%), Postives = 92/152 (60.53%), Query Frame = 1


Query: 4   LLCSNPVSTSLPS--SLFPLSPSCFPMNSAAQCSMLFMKPNVFQPKHFNGVGLRNPSLIE 63
           LLC N    SLPS  SL   S S    + +    +L +KPN  + K  N V L   SL  
Sbjct: 3   LLCFN----SLPSLSSLSSSSSSRLLQSPSFASPVLSLKPNAVESK--NRVSLSAYSLNS 62

Query: 64  NRSSLIVKAA-SEIDATVETDSSEPQP--PAVPVDKLPLESKLQERE---EQKARMKLAK 123
           +   ++VKAA S +D        EP+    AVPVDKLPLESK  + +   E + +MKLAK
Sbjct: 63  SHGRIVVKAAASGVDGAEPESKEEPKTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAK 122

Query: 124 KIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 148
           KIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Sbjct: 123 KIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

[Close]

BLAST of CmaCh07G011140 vs. NCBI nr
Match: gi|449453131|ref|XP_004144312.1| (PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 3.2e-45
Identity = 115/152 (75.66%), Postives = 121/152 (79.61%), Query Frame = 1


Query: 2   ALLLCSNPVSTSLPSSLFPLSPSCFPMNSAAQCSMLFMKPNVFQPKHFNGVGLRNPSLIE 61
           + LL SNP+STS   S  P SPSCFP  SA   SML MKP  FQPKHFNGV LRN S +E
Sbjct: 3   SFLLSSNPLSTSFHFSTSP-SPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVE 62

Query: 62  NRSSLIVKAASEIDATVETDSSEPQPPA------VPVDKLPLESKLQEREEQKARMKLAK 121
           N +SL+VKAASE DAT ETDSS+ QP A      VPVDKLPLESKLQER EQKARMKLAK
Sbjct: 63  NTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAK 122

Query: 122 KIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 148
           KIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 KIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]

BLAST of CmaCh07G011140 vs. NCBI nr
Match: gi|659111487|ref|XP_008455762.1| (PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 5.6e-42
Identity = 112/153 (73.20%), Postives = 118/153 (77.12%), Query Frame = 1


Query: 2   ALLLCSNPVSTSLP-SSLFPLSPSCFPMNSAAQCSMLFMKPNVFQPKHFNGVGLRNPSLI 61
           + LLCSNP+STS   S+L P    CFP  SA   SML MKP  FQPK FNGV LRN   +
Sbjct: 3   SFLLCSNPLSTSFHFSTLHP----CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFV 62

Query: 62  ENRSSLIVKAASEIDATVETDSSEPQPPA------VPVDKLPLESKLQEREEQKARMKLA 121
           EN +SL+VKAASE DAT E DSSE QP A      VPVDKLPLESKLQER EQKARMKLA
Sbjct: 63  ENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 122

Query: 122 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 148
           KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 151

[Close]

BLAST of CmaCh07G011140 vs. NCBI nr
Match: gi|645251834|ref|XP_008231856.1| (PREDICTED: 50S ribosomal protein 5, chloroplastic [Prunus mume])

HSP 1 Score: 135.2 bits (339), Expect = 9.3e-29
Identity = 92/156 (58.97%), Postives = 112/156 (71.79%), Query Frame = 1


Query: 1   MALLLCSNPVSTSLPSSLFPLSPSCFPMNSAAQC-----SMLFMKPNVFQPKHFNGVGLR 60
           M LLL SNP+  +  SS    S S FP +S++       S L +KP    PK F+GV LR
Sbjct: 1   MGLLLYSNPLPLTTASSR---SSSPFPTSSSSTAATAIFSRLHLKPTDAHPKSFSGVRLR 60

Query: 61  NPSLIENRSSLIVKAASEIDATVETDSSEP----QPPAVPVDKLPLESKLQEREEQKARM 120
            P+ ++  +S++VKA+S+ID T  T+SSEP    +   VPVDKLPLESKLQER EQKA+M
Sbjct: 61  MPA-VKRFASVVVKASSDIDGTSPTESSEPVLDTKKEVVPVDKLPLESKLQERLEQKAKM 120

Query: 121 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 148
           +LAKKIRLRRKRLV+KR LRKKGRWPPSKMKKLKNV
Sbjct: 121 QLAKKIRLRRKRLVRKRKLRKKGRWPPSKMKKLKNV 152

[Close]

BLAST of CmaCh07G011140 vs. NCBI nr
Match: gi|657950016|ref|XP_008345900.1| (PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Malus domestica])

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 90/156 (57.69%), Postives = 110/156 (70.51%), Query Frame = 1


Query: 1   MALLLCSNPV---STSLPSSLFPLSPSCFPMNSAAQCSMLFMKPNVFQPKHFNGVGLRNP 60
           M LLL SNP+   + S PSS    SP+  P + +A  S + MKPN   PK F+GV L  P
Sbjct: 1   MGLLLYSNPLPLTTASSPSSSSSPSPTSSPSSFSATISWMHMKPNNLHPKSFSGVRLHMP 60

Query: 61  SLIENRSSLIVKAASEIDATVET-DSSEPQPPA-----VPVDKLPLESKLQEREEQKARM 120
            +++  +S++VKA+S+ID T    + SEP P +     VPVDKLPLESKLQER EQK +M
Sbjct: 61  -VVKRSASVVVKASSDIDGTTAANEGSEPLPDSKGEAVVPVDKLPLESKLQERLEQKKKM 120

Query: 121 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 148
           +LAKKIRLRR RLV+KR LRKKGRWPPSKMKKLKNV
Sbjct: 121 QLAKKIRLRRNRLVRKRKLRKKGRWPPSKMKKLKNV 155

[Close]

BLAST of CmaCh07G011140 vs. NCBI nr
Match: gi|596009937|ref|XP_007218548.1| (hypothetical protein PRUPE_ppa012848mg [Prunus persica])

HSP 1 Score: 129.8 bits (325), Expect = 3.9e-27
Identity = 91/156 (58.33%), Postives = 109/156 (69.87%), Query Frame = 1


Query: 1   MALLLCSNPVSTSLPSSLFPLSPSCFPMNSAAQC-----SMLFMKPNVFQPKHFNGVGLR 60
           M LLL SNP+  +  SS    S S FP +S++       S L +KP    PK F+GV LR
Sbjct: 1   MGLLLYSNPLPLTTASSR---SSSPFPTSSSSTAATAIFSRLRLKPTDAHPKSFSGVCLR 60

Query: 61  NPSLIENRSSLIVKAASEIDATVETDSSEP----QPPAVPVDKLPLESKLQEREEQKARM 120
            P+ ++   S++ KA+S+ID T  T SSEP    +   VPVDKLPLESKLQER EQKA+M
Sbjct: 61  MPA-VKRFPSVVGKASSDIDGTSPTQSSEPVSDTKKEVVPVDKLPLESKLQERLEQKAKM 120

Query: 121 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 148
           +LAKKIRLRRKRLV+KR LRKKGRWPPSKMKKLKNV
Sbjct: 121 QLAKKIRLRRKRLVRKRKLRKKGRWPPSKMKKLKNV 152

The following BLAST results are available for this feature:

BLAST of CmaCh07G011140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSRP5_ARATH	3.7e-17	50.00	50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana GN=PSRP5 PE=1 SV=...	[more]
PSRP5_PEA	5.3e-16	47.02	50S ribosomal protein 5, chloroplastic OS=Pisum sativum GN=PSRP5 PE=2 SV=1	[more]
PSRP5_SPIOL	3.6e-12	42.28	50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea GN=PSRP5 PE=1 ...	[more]

BLAST of CmaCh07G011140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3F4_CUCSA	2.2e-45	75.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G419580 PE=4 SV=1	[more]
M5X0Y9_PRUPE	2.7e-27	58.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012848mg PE=4 SV=1	[more]
A0A067EU38_CITSI	8.8e-26	56.29	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032202mg PE=4 SV=1	[more]
V4SSM9_9ROSI	8.8e-26	56.29	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013047mg PE=4 SV=1	[more]
W9S7L7_9ROSA	3.7e-24	54.73	Uncharacterized protein OS=Morus notabilis GN=L484_027931 PE=4 SV=1	[more]

BLAST of CmaCh07G011140 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G56910.1	2.1e-18	50.00	plastid-specific 50S ribosomal protein 5	[more]

BLAST of CmaCh07G011140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453131\|ref\|XP_004144312.1\|	3.2e-45	75.66	PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis sativus]	[more]
gi\|659111487\|ref\|XP_008455762.1\|	5.6e-42	73.20	PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo]	[more]
gi\|645251834\|ref\|XP_008231856.1\|	9.3e-29	58.97	PREDICTED: 50S ribosomal protein 5, chloroplastic [Prunus mume]	[more]
gi\|657950016\|ref\|XP_008345900.1\|	1.2e-28	57.69	PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Malus domestica]	[more]
gi\|596009937\|ref\|XP_007218548.1\|	3.9e-27	58.33	hypothetical protein PRUPE_ppa012848mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0032544	plastid translation
cellular_component	GO:0044434	chloroplast part
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G011140.1	CmaCh07G011140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRODOM	PD031914		coord: 70..147 score: 8.
None	No IPR available	unknown	Coil	Coil	coord: 97..117 scor
None	No IPR available	PANTHER	PTHR34678	FAMILY NOT NAMED	coord: 4..147 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh07G011140	Cucsa.358680	Cucumber (Gy14) v1	cgycmaB0974
CmaCh07G011140	Cla012071	Watermelon (97103) v1	cmawmB829
CmaCh07G011140	Csa4G419580	Cucumber (Chinese Long) v2	cmacuB867
CmaCh07G011140	MELO3C019148	Melon (DHL92) v3.5.1	cmameB802
CmaCh07G011140	ClCG04G005980	Watermelon (Charleston Gray)	cmawcgB763
CmaCh07G011140	CSPI04G18780	Wild cucumber (PI 183967)	cmacpiB883
CmaCh07G011140	CmoCh07G011620	Cucurbita moschata (Rifu)	cmacmoB875
CmaCh07G011140	CmoCh03G001950	Cucurbita moschata (Rifu)	cmacmoB859
CmaCh07G011140	Lsi01G017450	Bottle gourd (USVL1VR-Ls)	cmalsiB791
CmaCh07G011140	Cp4.1LG10g10660	Cucurbita pepo (Zucchini)	cmacpeB867
CmaCh07G011140	Cp4.1LG19g02400	Cucurbita pepo (Zucchini)	cmacpeB880
CmaCh07G011140	MELO3C019148.2	Melon (DHL92) v3.6.1	cmamedB902
CmaCh07G011140	CsaV3_4G029150	Cucumber (Chinese Long) v3	cmacucB1021
CmaCh07G011140	Cla97C04G072560	Watermelon (97103) v2	cmawmbB892
CmaCh07G011140	Bhi03G002083	Wax gourd	cmawgoB1063
CmaCh07G011140	CsGy4G017830	Cucumber (Gy14) v2	cgybcmaB568
CmaCh07G011140	Carg13326	Silver-seed gourd	carcmaB0818

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh07G011140	CmaCh03G001660	Cucurbita maxima (Rimu)	cmacmaB524

The following block(s) are covering this gene:

None