MELO3C018835 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018835
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRibonuclease 3 family protein
Locationchr1 : 3211349 .. 3211937 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAAAGCCCCAAAAGTCCTAGCCGACATTGTTGAATCAACCATTGGAGCTGTTTTCGCCGATAGCAACTCCATTGACATTGTTTGGAAGGTACTTACTATTTATACTCAACTATTATTCCAATGTATTCCGTGTTTCGTTTTATCTTTATGACTTCATTCAACTATTACGATTATCTAATTAGAGACGAAAAAAAGATGTTTTAAAAACTTAAGTGAGTAAACAAGAACATAACTTAAACTAGATCTAATCGTTGGTTTGAACTAATTTAAAGAAAGATGAGACAAAGGTTTTGGATTATGTGTAGATATTTAAGGAATTAATGGAGCCATTGATAACATTGAAGACAATGAAGAAACATCCAATGACGGAATTGACAGAAATGTGTCAAAAGAGAAACCTGAAGTTGGAGTTCAGAGATCGTTGGCAGGAAACAAAAGAAATAGAAGTTTTGATAGAGAAACAACTTGTTGGTAAAGGAAGTTATCGCAAAAAGCTTATCGCACAAAATAGAGCTGCTAAAAATGCTTTGGACAACTTAGACGCATTTTTTCCACAATTTAATCAACCTTGTCAACCTATGTAA

mRNA sequence

ATGATAAAAGCCCCAAAAGTCCTAGCCGACATTGTTGAATCAACCATTGGAGCTGTTTTCGCCGATAGCAACTCCATTGACATTGTTTGGAAGATATTTAAGGAATTAATGGAGCCATTGATAACATTGAAGACAATGAAGAAACATCCAATGACGGAATTGACAGAAATGTGTCAAAAGAGAAACCTGAAGTTGGAGTTCAGAGATCGTTGGCAGGAAACAAAAGAAATAGAAGTTTTGATAGAGAAACAACTTGTTGGTAAAGGAAGTTATCGCAAAAAGCTTATCGCACAAAATAGAGCTGCTAAAAATGCTTTGGACAACTTAGACGCATTTTTTCCACAATTTAATCAACCTTGTCAACCTATGTAA

Coding sequence (CDS)

ATGATAAAAGCCCCAAAAGTCCTAGCCGACATTGTTGAATCAACCATTGGAGCTGTTTTCGCCGATAGCAACTCCATTGACATTGTTTGGAAGATATTTAAGGAATTAATGGAGCCATTGATAACATTGAAGACAATGAAGAAACATCCAATGACGGAATTGACAGAAATGTGTCAAAAGAGAAACCTGAAGTTGGAGTTCAGAGATCGTTGGCAGGAAACAAAAGAAATAGAAGTTTTGATAGAGAAACAACTTGTTGGTAAAGGAAGTTATCGCAAAAAGCTTATCGCACAAAATAGAGCTGCTAAAAATGCTTTGGACAACTTAGACGCATTTTTTCCACAATTTAATCAACCTTGTCAACCTATGTAA

Protein sequence

MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQKRNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPCQPM*
Homology
[Close]
BLAST of MELO3C018835 vs. Swiss-Prot
Match: RTL3_ORYSJ (Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica GN=Os06g0358800 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.5e-24
Identity = 58/113 (51.33%), Postives = 84/113 (74.34%), Query Frame = 1 

Query: 1   MIKAPKVLADIVESTIGAVFADSN-SIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQ 60
           ++  PKVL D+VES IGA++ DSN + +IVW++F++L +PLI+L+T+ KHP++EL E CQ
Sbjct: 160 LLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGKHPVSELFEFCQ 219

Query: 61  K--RNLKLEFRDRWQETKEIEVLIEKQLVGKGSY-RKKLIAQNRAAKNALDNL 110
           K  R +K+  +D W +   +EVLI+ ++VG+ +Y +KK IAQNRAAK ALD L
Sbjct: 220 KTRRGVKI-VKDEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAKAALDKL 271

[Close]
BLAST of MELO3C018835 vs. Swiss-Prot
Match: DCL1_ARATH (Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 5.8e-16
Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 1 

Query: 3    KAPKVLADIVESTIGAVFADSNS-IDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQKR 62
            KAPKVL DIVES  GA+F DS       WK+F+ L++P++T +T+  HP+ EL E CQ++
Sbjct: 1686 KAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQ 1745

Query: 63   NLKLEFR-DRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNAL 107
               LE++  R   T  +EV I+   VG     +K +AQ  AA+NAL
Sbjct: 1746 AEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNAL 1791

[Close]
BLAST of MELO3C018835 vs. Swiss-Prot
Match: DCL1_ORYSJ (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.6e-16
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = 1 

Query: 3    KAPKVLADIVESTIGAVFADSN-SIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQKR 62
            KAPKVL DIVES  GA+F DS     +VWK+F+ L+ P++T +T+  HP+ EL E CQ++
Sbjct: 1665 KAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQ 1724

Query: 63   NLKLEFR-DRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNAL 107
               LE++  R      +EV ++   +G     +K +AQ  AA+NAL
Sbjct: 1725 AEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNAL 1770

[Close]
BLAST of MELO3C018835 vs. Swiss-Prot
Match: RTL2_ORYSJ (Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica GN=Os05g0271300 PE=2 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 8.4e-15
Identity = 45/112 (40.18%), Postives = 69/112 (61.61%), Query Frame = 1 

Query: 1   MIKAPKVLADIVESTIGAVFADSN-SIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQ 60
           ++KAPKVLADIVE+   AV+ D    ++ +WK+ + L EP+IT +T+ + P+T L E+CQ
Sbjct: 162 VVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDEQPVTMLHELCQ 221

Query: 61  KRNLKLEFRDRWQE--TKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNL 110
           K     +F+  WQ+     + V +  +LVG GS  +K+IA+  AA++A   L
Sbjct: 222 KHGKMAQFK-TWQKGGMTVVNVFVAGELVGIGSSEQKVIAKLNAARDATRKL 272

[Close]
BLAST of MELO3C018835 vs. Swiss-Prot
Match: RTL2_ARATH (Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana GN=RTL2 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.9e-13
Identity = 43/118 (36.44%), Postives = 68/118 (57.63%), Query Frame = 1 

Query: 1   MIKAPKVLADIVESTIGAVFADSN-SIDIVWKIFKELMEPLITLKTMKK--HPMTELTEM 60
           ++KAPKVLAD+ ES  GAV+ D N  +  +W IF+ L+EP++TL  ++K   P++ L ++
Sbjct: 180 LVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSMLFKL 239

Query: 61  CQKRNLKLEFRDRWQETKEIEVL-IEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFP 115
           C K   +++ ++       I V+ ++ +L+  G    K IA+  AAK AL  L   FP
Sbjct: 240 CHKHKKRIDIKNWKDGNVSIAVIYLDDELLASGRAENKDIARLIAAKEALRKLSEVFP 297

[Close]
BLAST of MELO3C018835 vs. TrEMBL
Match: A0A0A0K1J8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G041940 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.7e-59
Identity = 116/123 (94.31%), Postives = 120/123 (97.56%), Query Frame = 1 

Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 60
           MIKAPKVLADIVESTIGAVFADSN ID VWKIFKELMEPLITLKTMKKHPMTELTEMCQK
Sbjct: 153 MIKAPKVLADIVESTIGAVFADSNFIDTVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 212

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120
           R+LKLEFRDRW+ETKEIEVLIEKQ+VGKGSYRKKLIAQNRAAKNAL+NLD FFPQFNQPC
Sbjct: 213 RSLKLEFRDRWEETKEIEVLIEKQVVGKGSYRKKLIAQNRAAKNALENLDTFFPQFNQPC 272

Query: 121 QPM 124
           QPM
Sbjct: 273 QPM 275

[Close]
BLAST of MELO3C018835 vs. TrEMBL
Match: A0A067K3V1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13725 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.8e-30
Identity = 68/111 (61.26%), Postives = 89/111 (80.18%), Query Frame = 1 

Query: 1   MIKAPKVLADIVESTIGAVFADSNS-IDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQ 60
           ++  PKVLADIVES IGAVF DSNS +D  WK+FK+L+EP+I  +T+K HP+TEL E+CQ
Sbjct: 171 LVDVPKVLADIVESVIGAVFIDSNSSVDTTWKVFKDLLEPIINQETLKVHPVTELYEVCQ 230

Query: 61  KRNLKLEFRDRWQETKEIEVLIEKQLVGKGSY-RKKLIAQNRAAKNALDNL 110
           KRNLK++F D W+E+   +VLI  QL+G+G+Y  KK IA NRAAK+ALDN+
Sbjct: 231 KRNLKVKFVDSWRESMAFDVLINDQLIGRGTYGLKKEIAHNRAAKDALDNI 281

[Close]
BLAST of MELO3C018835 vs. TrEMBL
Match: B9GTV4_POPTR (Ribonuclease 3 family protein OS=Populus trichocarpa GN=POPTR_0002s21490g PE=4 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 4.9e-30
Identity = 68/111 (61.26%), Postives = 90/111 (81.08%), Query Frame = 1 

Query: 1   MIKAPKVLADIVESTIGAVFADSN-SIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQ 60
           +++ PK LADIVE+ IGAVF DSN SID+VWKIFK+L+EP+I+ +T+K HP+TEL E+CQ
Sbjct: 156 LVETPKALADIVEAAIGAVFIDSNFSIDVVWKIFKDLLEPIISQETLKVHPVTELYEVCQ 215

Query: 61  KRNLKLEFRDRWQETKEIEVLIEKQLVGKGSY-RKKLIAQNRAAKNALDNL 110
           KRNLK++F D W+E    +V I+ Q VG+G+Y  KK IA NRAAKNAL+N+
Sbjct: 216 KRNLKVKFVDLWKENMAFDVFIDDQFVGRGTYGLKKEIAHNRAAKNALNNI 266

[Close]
BLAST of MELO3C018835 vs. TrEMBL
Match: M5WYY1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024586mg PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 67/110 (60.91%), Postives = 87/110 (79.09%), Query Frame = 1 

Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 60
           +I APK LADIVESTIGAVF D NSID VW+ FK+L+EP+I   T+K HP+T+L E+CQK
Sbjct: 145 LIDAPKNLADIVESTIGAVFMDCNSIDTVWEAFKDLLEPIINPGTIKTHPVTQLYEICQK 204

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYR-KKLIAQNRAAKNALDNL 110
            NLKL F + W+E+  +EV I  ++VG+G+Y  KK +AQNRAAK+ALDN+
Sbjct: 205 NNLKLRFVNLWEESHTVEVFINNEIVGRGTYSLKKEVAQNRAAKDALDNI 254

[Close]
BLAST of MELO3C018835 vs. TrEMBL
Match: V4UEZ0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016164mg PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 68/112 (60.71%), Postives = 91/112 (81.25%), Query Frame = 1 

Query: 1   MIKAPKVLADIVESTIGAVFADSNS-IDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQ 60
           ++ APKVLADIVESTIGAVF D NS IDIVWK+FKEL++P+I+ +T+K HP+TEL E+CQ
Sbjct: 157 LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 216

Query: 61  KRNLKLEFRDRWQETKEIEVLIEKQLVGKGSYR-KKLIAQNRAAKNALDNLD 111
           K  LK++F D W+E+    + IE QL+G+G+Y  KK IA NRAAK+AL+N++
Sbjct: 217 KNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 268

[Close]
BLAST of MELO3C018835 vs. TAIR10
Match: AT4G15417.1 (AT4G15417.1 RNAse II-like 1)

HSP 1 Score: 131.0 bits (328), Expect = 5.2e-31
Identity = 67/114 (58.77%), Postives = 79/114 (69.30%), Query Frame = 1 

Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 60
           ++K PKVLADIVESTIGA+F D NS + VWK+ K L+EP+I L  MK HPMTEL EMCQK
Sbjct: 148 LLKVPKVLADIVESTIGAIFMDCNSTETVWKVIKPLLEPIIHLDKMKSHPMTELNEMCQK 207

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYR-KKLIAQNRAAKNALDNLDAFF 114
           RNLKL  +D W+E +     IE + VG G +  KK  A+N AAKNA+DN   FF
Sbjct: 208 RNLKLTSKDTWEENQTYCFHIEDKFVGCGHHPVKKETARNFAAKNAIDNFAKFF 261

[Close]
BLAST of MELO3C018835 vs. TAIR10
Match: AT1G01040.2 (AT1G01040.2 dicer-like 1)

HSP 1 Score: 85.1 bits (209), Expect = 3.3e-17
Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 1 

Query: 3    KAPKVLADIVESTIGAVFADSNS-IDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQKR 62
            KAPKVL DIVES  GA+F DS       WK+F+ L++P++T +T+  HP+ EL E CQ++
Sbjct: 1687 KAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQ 1746

Query: 63   NLKLEFR-DRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNAL 107
               LE++  R   T  +EV I+   VG     +K +AQ  AA+NAL
Sbjct: 1747 AEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNAL 1792

[Close]
BLAST of MELO3C018835 vs. TAIR10
Match: AT3G20420.1 (AT3G20420.1 RNAse THREE-like protein 2)

HSP 1 Score: 74.7 bits (182), Expect = 4.4e-14
Identity = 43/118 (36.44%), Postives = 68/118 (57.63%), Query Frame = 1 

Query: 1   MIKAPKVLADIVESTIGAVFADSN-SIDIVWKIFKELMEPLITLKTMKK--HPMTELTEM 60
           ++KAPKVLAD+ ES  GAV+ D N  +  +W IF+ L+EP++TL  ++K   P++ L ++
Sbjct: 180 LVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSMLFKL 239

Query: 61  CQKRNLKLEFRDRWQETKEIEVL-IEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFP 115
           C K   +++ ++       I V+ ++ +L+  G    K IA+  AAK AL  L   FP
Sbjct: 240 CHKHKKRIDIKNWKDGNVSIAVIYLDDELLASGRAENKDIARLIAAKEALRKLSEVFP 297

[Close]
BLAST of MELO3C018835 vs. TAIR10
Match: AT3G03300.1 (AT3G03300.1 dicer-like 2)

HSP 1 Score: 60.8 bits (146), Expect = 6.6e-10
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 1 

Query: 2    IKAPKVLADIVESTIGAVFADSN-SIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 61
            I  PKVL D++ES  GA+F DS  + ++V+   K L+  +IT +T+K HP+ ELTE+CQK
Sbjct: 1274 ISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQK 1333

Query: 62   RNLKL----EFRDRWQETKEIEVLI-------EKQLVGKGSYRKKLIAQNRAAKNALD 108
               +L    +F     E K  E+         +K++  K +Y++ L       KN+LD
Sbjct: 1334 WQFELSKAKDFDSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVL----NLLKNSLD 1387

[Close]
BLAST of MELO3C018835 vs. TAIR10
Match: AT5G20320.1 (AT5G20320.1 dicer-like 4)

HSP 1 Score: 49.7 bits (117), Expect = 1.5e-06
Identity = 33/114 (28.95%), Postives = 55/114 (48.25%), Query Frame = 1 

Query: 3    KAPKVLADIVESTIGAVFADSN-SIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQKR 62
            + PKVL D+VES +GA+F D   +++ VW +    ++P+  L  ++  P+ EL E+CQ  
Sbjct: 1415 RCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSY 1474

Query: 63   NLKLEFRDRWQE-TKEIEVLIEKQ---LVGKGSYRKKLIAQNRAAKNALDNLDA 112
                E     ++    +E+ + K    L    + R K     +AA+  + NL A
Sbjct: 1475 KWDREISATKKDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMITNLKA 1528

[Close]
BLAST of MELO3C018835 vs. NCBI nr
Match: gi|659110883|ref|XP_008455460.1| (PREDICTED: ribonuclease 3-like protein 3 [Cucumis melo])

HSP 1 Score: 248.1 bits (632), Expect = 8.3e-63
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1 

Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 60
           MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK
Sbjct: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 60

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120
           RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC
Sbjct: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120

Query: 121 QPM 124
           QPM
Sbjct: 121 QPM 123

[Close]
BLAST of MELO3C018835 vs. NCBI nr
Match: gi|449453708|ref|XP_004144598.1| (PREDICTED: ribonuclease 3-like protein 3 [Cucumis sativus])

HSP 1 Score: 236.5 bits (602), Expect = 2.5e-59
Identity = 116/123 (94.31%), Postives = 120/123 (97.56%), Query Frame = 1 

Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 60
           MIKAPKVLADIVESTIGAVFADSN ID VWKIFKELMEPLITLKTMKKHPMTELTEMCQK
Sbjct: 153 MIKAPKVLADIVESTIGAVFADSNFIDTVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 212

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120
           R+LKLEFRDRW+ETKEIEVLIEKQ+VGKGSYRKKLIAQNRAAKNAL+NLD FFPQFNQPC
Sbjct: 213 RSLKLEFRDRWEETKEIEVLIEKQVVGKGSYRKKLIAQNRAAKNALENLDTFFPQFNQPC 272

Query: 121 QPM 124
           QPM
Sbjct: 273 QPM 275

[Close]
BLAST of MELO3C018835 vs. NCBI nr
Match: gi|694377586|ref|XP_009365085.1| (PREDICTED: ribonuclease 3-like protein 3 [Pyrus x bretschneideri])

HSP 1 Score: 141.7 bits (356), Expect = 8.4e-31
Identity = 69/110 (62.73%), Postives = 87/110 (79.09%), Query Frame = 1 

Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 60
           +I APK LADIVESTIGAVF D NSIDIVWK+FK+L+EP+I  KT+K+HP ++L E+CQK
Sbjct: 163 LIDAPKNLADIVESTIGAVFMDCNSIDIVWKVFKDLLEPIIDPKTIKRHPASQLHEVCQK 222

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYR-KKLIAQNRAAKNALDNL 110
            NL L F D W+E   +EV I  Q+VG+G+Y  KK +A NRAAK+ALDN+
Sbjct: 223 NNLNLRFVDLWEEKHTVEVFINDQIVGRGTYSLKKEVAHNRAAKDALDNM 272

[Close]
BLAST of MELO3C018835 vs. NCBI nr
Match: gi|645247882|ref|XP_008230046.1| (PREDICTED: ribonuclease 3-like protein 3 [Prunus mume])

HSP 1 Score: 139.4 bits (350), Expect = 4.2e-30
Identity = 68/110 (61.82%), Postives = 87/110 (79.09%), Query Frame = 1 

Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 60
           +I APK LADIVESTIGAVF D NSID VW+ FK+L+EP+I   T+K HP+T+L E+CQK
Sbjct: 157 LIDAPKNLADIVESTIGAVFMDCNSIDTVWEAFKDLLEPIINPGTIKTHPVTQLYEICQK 216

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYR-KKLIAQNRAAKNALDNL 110
            NLKL F D W+E+  +EV I  ++VG+G+Y  KK +AQNRAAK+ALDN+
Sbjct: 217 NNLKLRFVDLWEESHTVEVFINNEIVGRGTYSLKKEVAQNRAAKDALDNI 266

[Close]
BLAST of MELO3C018835 vs. NCBI nr
Match: gi|743926079|ref|XP_011007194.1| (PREDICTED: ribonuclease 3-like protein 3 isoform X1 [Populus euphratica])

HSP 1 Score: 139.0 bits (349), Expect = 5.4e-30
Identity = 69/111 (62.16%), Postives = 90/111 (81.08%), Query Frame = 1 

Query: 1   MIKAPKVLADIVESTIGAVFADSN-SIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQ 60
           ++ APK LADIVE+ IGAVF DSN SID+VWKIFK L+EP+I+ +T+K HP+TEL E+CQ
Sbjct: 170 LVDAPKALADIVEAAIGAVFIDSNFSIDVVWKIFKNLLEPIISQETLKVHPVTELYEVCQ 229

Query: 61  KRNLKLEFRDRWQETKEIEVLIEKQLVGKGSY-RKKLIAQNRAAKNALDNL 110
           KRNLK++F D W+E    +V I+ Q VG+G+Y  KK IAQNRAA+NAL+N+
Sbjct: 230 KRNLKVKFVDLWKENTAFDVFIDDQFVGRGTYGLKKEIAQNRAAENALNNI 280

The following BLAST results are available for this feature:
BLAST of MELO3C018835 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RTL3_ORYSJ4.5e-2451.33Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica GN=Os06g0358800 PE... [more]
DCL1_ARATH5.8e-1644.34Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2[more]
DCL1_ORYSJ7.6e-1642.45Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV... [more]
RTL2_ORYSJ8.4e-1540.18Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica GN=Os05g0271300 PE... [more]
RTL2_ARATH7.9e-1336.44Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana GN=RTL2 PE=1 SV=1[more]
BLAST of MELO3C018835 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1J8_CUCSA1.7e-5994.31Uncharacterized protein OS=Cucumis sativus GN=Csa_7G041940 PE=4 SV=1[more]
A0A067K3V1_JATCU3.8e-3061.26Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13725 PE=4 SV=1[more]
B9GTV4_POPTR4.9e-3061.26Ribonuclease 3 family protein OS=Populus trichocarpa GN=POPTR_0002s21490g PE=4 S... [more]
M5WYY1_PRUPE1.1e-2960.91Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024586mg PE=4 S... [more]
V4UEZ0_9ROSI1.1e-2960.71Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016164mg PE=4 SV=1[more]
BLAST of MELO3C018835 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15417.15.2e-3158.77 RNAse II-like 1[more]
AT1G01040.23.3e-1744.34 dicer-like 1[more]
AT3G20420.14.4e-1436.44 RNAse THREE-like protein 2[more]
AT3G03300.16.6e-1035.59 dicer-like 2[more]
AT5G20320.11.5e-0628.95 dicer-like 4[more]
BLAST of MELO3C018835 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110883|ref|XP_008455460.1|8.3e-63100.00PREDICTED: ribonuclease 3-like protein 3 [Cucumis melo][more]
gi|449453708|ref|XP_004144598.1|2.5e-5994.31PREDICTED: ribonuclease 3-like protein 3 [Cucumis sativus][more]
gi|694377586|ref|XP_009365085.1|8.4e-3162.73PREDICTED: ribonuclease 3-like protein 3 [Pyrus x bretschneideri][more]
gi|645247882|ref|XP_008230046.1|4.2e-3061.82PREDICTED: ribonuclease 3-like protein 3 [Prunus mume][more]
gi|743926079|ref|XP_011007194.1|5.4e-3062.16PREDICTED: ribonuclease 3-like protein 3 isoform X1 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000999RNase_III_dom
IPR014720dsRBD_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004525ribonuclease III activity
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0006396 RNA processing
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0016442 RISC complex
molecular_function GO:0004525 ribonuclease III activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018835T1MELO3C018835T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000999Ribonuclease III domainGENE3DG3DSA:1.10.1520.10coord: 4..43
score: 1.
IPR000999Ribonuclease III domainPROFILEPS50142RNASE_3_2coord: 1..24
score: 9
IPR014720Double-stranded RNA-binding domainGENE3DG3DSA:3.30.160.20coord: 48..109
score: 9.
IPR014720Double-stranded RNA-binding domainPFAMPF00035dsrmcoord: 50..109
score: 4.
NoneNo IPR availablePANTHERPTHR14950HELICASE-RELATEDcoord: 1..110
score: 4.7
NoneNo IPR availablePANTHERPTHR14950:SF29SUBFAMILY NOT NAMEDcoord: 1..110
score: 4.7
NoneNo IPR availableunknownSSF54768dsRNA-binding domain-likecoord: 6..109
score: 4.71

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C018835Csa7G041940Cucumber (Chinese Long) v2cumeB530
MELO3C018835ClCG02G002110Watermelon (Charleston Gray)mewcgB195
MELO3C018835Bhi05G001201Wax gourdmewgoB212
MELO3C018835CSPI07G03500Wild cucumber (PI 183967)cpimeB538
MELO3C018835Cucsa.148740Cucumber (Gy14) v1cgymeB248
MELO3C018835CmaCh19G009050Cucurbita maxima (Rimu)cmameB461
MELO3C018835CmoCh19G009320Cucurbita moschata (Rifu)cmomeB452
MELO3C018835Cp4.1LG15g07320Cucurbita pepo (Zucchini)cpemeB223
MELO3C018835CsGy7G003160Cucumber (Gy14) v2cgybmeB468
MELO3C018835Carg19158Silver-seed gourdcarmeB0865
MELO3C018835CsaV3_7G003390Cucumber (Chinese Long) v3cucmeB548
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C018835Cucurbita maxima (Rimu)cmameB099
MELO3C018835Cucurbita maxima (Rimu)cmameB513
MELO3C018835Cucurbita moschata (Rifu)cmomeB090
MELO3C018835Cucurbita moschata (Rifu)cmomeB504
MELO3C018835Wild cucumber (PI 183967)cpimeB103
MELO3C018835Wild cucumber (PI 183967)cpimeB462
MELO3C018835Cucumber (Chinese Long) v2cumeB103
MELO3C018835Cucumber (Chinese Long) v2cumeB465
MELO3C018835Watermelon (Charleston Gray)mewcgB194
MELO3C018835Watermelon (97103) v1mewmB238
MELO3C018835Watermelon (97103) v1mewmB241
MELO3C018835Watermelon (97103) v1mewmB246
MELO3C018835Cucurbita pepo (Zucchini)cpemeB273
MELO3C018835Cucurbita pepo (Zucchini)cpemeB609
MELO3C018835Bottle gourd (USVL1VR-Ls)lsimeB095
MELO3C018835Bottle gourd (USVL1VR-Ls)lsimeB130
MELO3C018835Cucumber (Gy14) v2cgybmeB089
MELO3C018835Cucumber (Gy14) v2cgybmeB404
MELO3C018835Silver-seed gourdcarmeB0304
MELO3C018835Silver-seed gourdcarmeB0345
MELO3C018835Silver-seed gourdcarmeB0640
MELO3C018835Cucumber (Chinese Long) v3cucmeB107
MELO3C018835Cucumber (Chinese Long) v3cucmeB473
MELO3C018835Watermelon (97103) v2mewmbB172
MELO3C018835Watermelon (97103) v2mewmbB178
MELO3C018835Wax gourdmewgoB235
MELO3C018835Wax gourdmewgoB236
MELO3C018835Melon (DHL92) v3.5.1memeB039
MELO3C018835Melon (DHL92) v3.5.1memeB100
MELO3C018835Cucumber (Gy14) v1cgymeB021