MELO3C018835T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018835T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ribonuclease 3 family protein
Location	chr1 : 3211349 .. 3211937 (-)
Sequence length	372

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAAAGCCCCAAAAGTCCTAGCCGACATTGTTGAATCAACCATTGGAGCTGTTTTCGCCGATAGCAACTCCATTGACATTGTTTGGAAGGTACTTACTATTTATACTCAACTATTATTCCAATGTATTCCGTGTTTCGTTTTATCTTTATGACTTCATTCAACTATTACGATTATCTAATTAGAGACGAAAAAAAGATGTTTTAAAAACTTAAGTGAGTAAACAAGAACATAACTTAAACTAGATCTAATCGTTGGTTTGAACTAATTTAAAGAAAGATGAGACAAAGGTTTTGGATTATGTGTAGATATTTAAGGAATTAATGGAGCCATTGATAACATTGAAGACAATGAAGAAACATCCAATGACGGAATTGACAGAAATGTGTCAAAAGAGAAACCTGAAGTTGGAGTTCAGAGATCGTTGGCAGGAAACAAAAGAAATAGAAGTTTTGATAGAGAAACAACTTGTTGGTAAAGGAAGTTATCGCAAAAAGCTTATCGCACAAAATAGAGCTGCTAAAAATGCTTTGGACAACTTAGACGCATTTTTTCCACAATTTAATCAACCTTGTCAACCTATGTAA

mRNA sequence

ATGATAAAAGCCCCAAAAGTCCTAGCCGACATTGTTGAATCAACCATTGGAGCTGTTTTCGCCGATAGCAACTCCATTGACATTGTTTGGAAGATATTTAAGGAATTAATGGAGCCATTGATAACATTGAAGACAATGAAGAAACATCCAATGACGGAATTGACAGAAATGTGTCAAAAGAGAAACCTGAAGTTGGAGTTCAGAGATCGTTGGCAGGAAACAAAAGAAATAGAAGTTTTGATAGAGAAACAACTTGTTGGTAAAGGAAGTTATCGCAAAAAGCTTATCGCACAAAATAGAGCTGCTAAAAATGCTTTGGACAACTTAGACGCATTTTTTCCACAATTTAATCAACCTTGTCAACCTATGTAA

Coding sequence (CDS)

ATGATAAAAGCCCCAAAAGTCCTAGCCGACATTGTTGAATCAACCATTGGAGCTGTTTTCGCCGATAGCAACTCCATTGACATTGTTTGGAAGATATTTAAGGAATTAATGGAGCCATTGATAACATTGAAGACAATGAAGAAACATCCAATGACGGAATTGACAGAAATGTGTCAAAAGAGAAACCTGAAGTTGGAGTTCAGAGATCGTTGGCAGGAAACAAAAGAAATAGAAGTTTTGATAGAGAAACAACTTGTTGGTAAAGGAAGTTATCGCAAAAAGCTTATCGCACAAAATAGAGCTGCTAAAAATGCTTTGGACAACTTAGACGCATTTTTTCCACAATTTAATCAACCTTGTCAACCTATGTAA

Protein sequence

MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQKRNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPCQPM*

Homology

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BLAST of MELO3C018835T1 vs. Swiss-Prot
Match: RTL3_ORYSJ (Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica GN=Os06g0358800 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.5e-24
Identity = 58/113 (51.33%), Postives = 84/113 (74.34%), Query Frame = 1


Query: 1   MIKAPKVLADIVESTIGAVFADSN-SIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQ 60
           ++  PKVL D+VES IGA++ DSN + +IVW++F++L +PLI+L+T+ KHP++EL E CQ
Sbjct: 160 LLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGKHPVSELFEFCQ 219

Query: 61  K--RNLKLEFRDRWQETKEIEVLIEKQLVGKGSY-RKKLIAQNRAAKNALDNL 110
           K  R +K+  +D W +   +EVLI+ ++VG+ +Y +KK IAQNRAAK ALD L
Sbjct: 220 KTRRGVKI-VKDEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAKAALDKL 271

[Close]

BLAST of MELO3C018835T1 vs. Swiss-Prot
Match: DCL1_ARATH (Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 5.8e-16
Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 3    KAPKVLADIVESTIGAVFADSNS-IDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQKR 62
            KAPKVL DIVES  GA+F DS       WK+F+ L++P++T +T+  HP+ EL E CQ++
Sbjct: 1686 KAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQ 1745

Query: 63   NLKLEFR-DRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNAL 107
               LE++  R   T  +EV I+   VG     +K +AQ  AA+NAL
Sbjct: 1746 AEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNAL 1791

[Close]

BLAST of MELO3C018835T1 vs. Swiss-Prot
Match: DCL1_ORYSJ (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.6e-16
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 3    KAPKVLADIVESTIGAVFADSN-SIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQKR 62
            KAPKVL DIVES  GA+F DS     +VWK+F+ L+ P++T +T+  HP+ EL E CQ++
Sbjct: 1665 KAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQ 1724

Query: 63   NLKLEFR-DRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNAL 107
               LE++  R      +EV ++   +G     +K +AQ  AA+NAL
Sbjct: 1725 AEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNAL 1770

[Close]

BLAST of MELO3C018835T1 vs. Swiss-Prot
Match: RTL2_ORYSJ (Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica GN=Os05g0271300 PE=2 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 8.4e-15
Identity = 45/112 (40.18%), Postives = 69/112 (61.61%), Query Frame = 1


Query: 1   MIKAPKVLADIVESTIGAVFADSN-SIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQ 60
           ++KAPKVLADIVE+   AV+ D    ++ +WK+ + L EP+IT +T+ + P+T L E+CQ
Sbjct: 162 VVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDEQPVTMLHELCQ 221

Query: 61  KRNLKLEFRDRWQE--TKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNL 110
           K     +F+  WQ+     + V +  +LVG GS  +K+IA+  AA++A   L
Sbjct: 222 KHGKMAQFK-TWQKGGMTVVNVFVAGELVGIGSSEQKVIAKLNAARDATRKL 272

[Close]

BLAST of MELO3C018835T1 vs. Swiss-Prot
Match: RTL2_ARATH (Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana GN=RTL2 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.9e-13
Identity = 43/118 (36.44%), Postives = 68/118 (57.63%), Query Frame = 1


Query: 1   MIKAPKVLADIVESTIGAVFADSN-SIDIVWKIFKELMEPLITLKTMKK--HPMTELTEM 60
           ++KAPKVLAD+ ES  GAV+ D N  +  +W IF+ L+EP++TL  ++K   P++ L ++
Sbjct: 180 LVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSMLFKL 239

Query: 61  CQKRNLKLEFRDRWQETKEIEVL-IEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFP 115
           C K   +++ ++       I V+ ++ +L+  G    K IA+  AAK AL  L   FP
Sbjct: 240 CHKHKKRIDIKNWKDGNVSIAVIYLDDELLASGRAENKDIARLIAAKEALRKLSEVFP 297

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BLAST of MELO3C018835T1 vs. TrEMBL
Match: A0A0A0K1J8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G041940 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.7e-59
Identity = 116/123 (94.31%), Postives = 120/123 (97.56%), Query Frame = 1


Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 60
           MIKAPKVLADIVESTIGAVFADSN ID VWKIFKELMEPLITLKTMKKHPMTELTEMCQK
Sbjct: 153 MIKAPKVLADIVESTIGAVFADSNFIDTVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 212

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120
           R+LKLEFRDRW+ETKEIEVLIEKQ+VGKGSYRKKLIAQNRAAKNAL+NLD FFPQFNQPC
Sbjct: 213 RSLKLEFRDRWEETKEIEVLIEKQVVGKGSYRKKLIAQNRAAKNALENLDTFFPQFNQPC 272

Query: 121 QPM 124
           QPM
Sbjct: 273 QPM 275

[Close]

BLAST of MELO3C018835T1 vs. TrEMBL
Match: A0A067K3V1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13725 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.8e-30
Identity = 68/111 (61.26%), Postives = 89/111 (80.18%), Query Frame = 1


Query: 1   MIKAPKVLADIVESTIGAVFADSNS-IDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQ 60
           ++  PKVLADIVES IGAVF DSNS +D  WK+FK+L+EP+I  +T+K HP+TEL E+CQ
Sbjct: 171 LVDVPKVLADIVESVIGAVFIDSNSSVDTTWKVFKDLLEPIINQETLKVHPVTELYEVCQ 230

Query: 61  KRNLKLEFRDRWQETKEIEVLIEKQLVGKGSY-RKKLIAQNRAAKNALDNL 110
           KRNLK++F D W+E+   +VLI  QL+G+G+Y  KK IA NRAAK+ALDN+
Sbjct: 231 KRNLKVKFVDSWRESMAFDVLINDQLIGRGTYGLKKEIAHNRAAKDALDNI 281

[Close]

BLAST of MELO3C018835T1 vs. TrEMBL
Match: B9GTV4_POPTR (Ribonuclease 3 family protein OS=Populus trichocarpa GN=POPTR_0002s21490g PE=4 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 4.9e-30
Identity = 68/111 (61.26%), Postives = 90/111 (81.08%), Query Frame = 1


Query: 1   MIKAPKVLADIVESTIGAVFADSN-SIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQ 60
           +++ PK LADIVE+ IGAVF DSN SID+VWKIFK+L+EP+I+ +T+K HP+TEL E+CQ
Sbjct: 156 LVETPKALADIVEAAIGAVFIDSNFSIDVVWKIFKDLLEPIISQETLKVHPVTELYEVCQ 215

Query: 61  KRNLKLEFRDRWQETKEIEVLIEKQLVGKGSY-RKKLIAQNRAAKNALDNL 110
           KRNLK++F D W+E    +V I+ Q VG+G+Y  KK IA NRAAKNAL+N+
Sbjct: 216 KRNLKVKFVDLWKENMAFDVFIDDQFVGRGTYGLKKEIAHNRAAKNALNNI 266

[Close]

BLAST of MELO3C018835T1 vs. TrEMBL
Match: M5WYY1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024586mg PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 67/110 (60.91%), Postives = 87/110 (79.09%), Query Frame = 1


Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 60
           +I APK LADIVESTIGAVF D NSID VW+ FK+L+EP+I   T+K HP+T+L E+CQK
Sbjct: 145 LIDAPKNLADIVESTIGAVFMDCNSIDTVWEAFKDLLEPIINPGTIKTHPVTQLYEICQK 204

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYR-KKLIAQNRAAKNALDNL 110
            NLKL F + W+E+  +EV I  ++VG+G+Y  KK +AQNRAAK+ALDN+
Sbjct: 205 NNLKLRFVNLWEESHTVEVFINNEIVGRGTYSLKKEVAQNRAAKDALDNI 254

[Close]

BLAST of MELO3C018835T1 vs. TrEMBL
Match: V4UEZ0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016164mg PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 68/112 (60.71%), Postives = 91/112 (81.25%), Query Frame = 1


Query: 1   MIKAPKVLADIVESTIGAVFADSNS-IDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQ 60
           ++ APKVLADIVESTIGAVF D NS IDIVWK+FKEL++P+I+ +T+K HP+TEL E+CQ
Sbjct: 157 LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 216

Query: 61  KRNLKLEFRDRWQETKEIEVLIEKQLVGKGSYR-KKLIAQNRAAKNALDNLD 111
           K  LK++F D W+E+    + IE QL+G+G+Y  KK IA NRAAK+AL+N++
Sbjct: 217 KNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 268

[Close]

BLAST of MELO3C018835T1 vs. TAIR10
Match: AT4G15417.1 (AT4G15417.1 RNAse II-like 1)

HSP 1 Score: 131.0 bits (328), Expect = 5.2e-31
Identity = 67/114 (58.77%), Postives = 79/114 (69.30%), Query Frame = 1


Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 60
           ++K PKVLADIVESTIGA+F D NS + VWK+ K L+EP+I L  MK HPMTEL EMCQK
Sbjct: 148 LLKVPKVLADIVESTIGAIFMDCNSTETVWKVIKPLLEPIIHLDKMKSHPMTELNEMCQK 207

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYR-KKLIAQNRAAKNALDNLDAFF 114
           RNLKL  +D W+E +     IE + VG G +  KK  A+N AAKNA+DN   FF
Sbjct: 208 RNLKLTSKDTWEENQTYCFHIEDKFVGCGHHPVKKETARNFAAKNAIDNFAKFF 261

[Close]

BLAST of MELO3C018835T1 vs. TAIR10
Match: AT1G01040.2 (AT1G01040.2 dicer-like 1)

HSP 1 Score: 85.1 bits (209), Expect = 3.3e-17
Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 3    KAPKVLADIVESTIGAVFADSNS-IDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQKR 62
            KAPKVL DIVES  GA+F DS       WK+F+ L++P++T +T+  HP+ EL E CQ++
Sbjct: 1687 KAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQ 1746

Query: 63   NLKLEFR-DRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNAL 107
               LE++  R   T  +EV I+   VG     +K +AQ  AA+NAL
Sbjct: 1747 AEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNAL 1792

[Close]

BLAST of MELO3C018835T1 vs. TAIR10
Match: AT3G20420.1 (AT3G20420.1 RNAse THREE-like protein 2)

HSP 1 Score: 74.7 bits (182), Expect = 4.4e-14
Identity = 43/118 (36.44%), Postives = 68/118 (57.63%), Query Frame = 1


Query: 1   MIKAPKVLADIVESTIGAVFADSN-SIDIVWKIFKELMEPLITLKTMKK--HPMTELTEM 60
           ++KAPKVLAD+ ES  GAV+ D N  +  +W IF+ L+EP++TL  ++K   P++ L ++
Sbjct: 180 LVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSMLFKL 239

Query: 61  CQKRNLKLEFRDRWQETKEIEVL-IEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFP 115
           C K   +++ ++       I V+ ++ +L+  G    K IA+  AAK AL  L   FP
Sbjct: 240 CHKHKKRIDIKNWKDGNVSIAVIYLDDELLASGRAENKDIARLIAAKEALRKLSEVFP 297

[Close]

BLAST of MELO3C018835T1 vs. TAIR10
Match: AT3G03300.1 (AT3G03300.1 dicer-like 2)

HSP 1 Score: 60.8 bits (146), Expect = 6.6e-10
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 1


Query: 2    IKAPKVLADIVESTIGAVFADSN-SIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 61
            I  PKVL D++ES  GA+F DS  + ++V+   K L+  +IT +T+K HP+ ELTE+CQK
Sbjct: 1274 ISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQK 1333

Query: 62   RNLKL----EFRDRWQETKEIEVLI-------EKQLVGKGSYRKKLIAQNRAAKNALD 108
               +L    +F     E K  E+         +K++  K +Y++ L       KN+LD
Sbjct: 1334 WQFELSKAKDFDSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVL----NLLKNSLD 1387

[Close]

BLAST of MELO3C018835T1 vs. TAIR10
Match: AT5G20320.1 (AT5G20320.1 dicer-like 4)

HSP 1 Score: 49.7 bits (117), Expect = 1.5e-06
Identity = 33/114 (28.95%), Postives = 55/114 (48.25%), Query Frame = 1


Query: 3    KAPKVLADIVESTIGAVFADSN-SIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQKR 62
            + PKVL D+VES +GA+F D   +++ VW +    ++P+  L  ++  P+ EL E+CQ  
Sbjct: 1415 RCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSY 1474

Query: 63   NLKLEFRDRWQE-TKEIEVLIEKQ---LVGKGSYRKKLIAQNRAAKNALDNLDA 112
                E     ++    +E+ + K    L    + R K     +AA+  + NL A
Sbjct: 1475 KWDREISATKKDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMITNLKA 1528

[Close]

BLAST of MELO3C018835T1 vs. NCBI nr
Match: gi|659110883|ref|XP_008455460.1| (PREDICTED: ribonuclease 3-like protein 3 [Cucumis melo])

HSP 1 Score: 248.1 bits (632), Expect = 8.3e-63
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 60
           MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK
Sbjct: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 60

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120
           RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC
Sbjct: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120

Query: 121 QPM 124
           QPM
Sbjct: 121 QPM 123

[Close]

BLAST of MELO3C018835T1 vs. NCBI nr
Match: gi|449453708|ref|XP_004144598.1| (PREDICTED: ribonuclease 3-like protein 3 [Cucumis sativus])

HSP 1 Score: 236.5 bits (602), Expect = 2.5e-59
Identity = 116/123 (94.31%), Postives = 120/123 (97.56%), Query Frame = 1


Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 60
           MIKAPKVLADIVESTIGAVFADSN ID VWKIFKELMEPLITLKTMKKHPMTELTEMCQK
Sbjct: 153 MIKAPKVLADIVESTIGAVFADSNFIDTVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 212

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120
           R+LKLEFRDRW+ETKEIEVLIEKQ+VGKGSYRKKLIAQNRAAKNAL+NLD FFPQFNQPC
Sbjct: 213 RSLKLEFRDRWEETKEIEVLIEKQVVGKGSYRKKLIAQNRAAKNALENLDTFFPQFNQPC 272

Query: 121 QPM 124
           QPM
Sbjct: 273 QPM 275

[Close]

BLAST of MELO3C018835T1 vs. NCBI nr
Match: gi|694377586|ref|XP_009365085.1| (PREDICTED: ribonuclease 3-like protein 3 [Pyrus x bretschneideri])

HSP 1 Score: 141.7 bits (356), Expect = 8.4e-31
Identity = 69/110 (62.73%), Postives = 87/110 (79.09%), Query Frame = 1


Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 60
           +I APK LADIVESTIGAVF D NSIDIVWK+FK+L+EP+I  KT+K+HP ++L E+CQK
Sbjct: 163 LIDAPKNLADIVESTIGAVFMDCNSIDIVWKVFKDLLEPIIDPKTIKRHPASQLHEVCQK 222

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYR-KKLIAQNRAAKNALDNL 110
            NL L F D W+E   +EV I  Q+VG+G+Y  KK +A NRAAK+ALDN+
Sbjct: 223 NNLNLRFVDLWEEKHTVEVFINDQIVGRGTYSLKKEVAHNRAAKDALDNM 272

[Close]

BLAST of MELO3C018835T1 vs. NCBI nr
Match: gi|645247882|ref|XP_008230046.1| (PREDICTED: ribonuclease 3-like protein 3 [Prunus mume])

HSP 1 Score: 139.4 bits (350), Expect = 4.2e-30
Identity = 68/110 (61.82%), Postives = 87/110 (79.09%), Query Frame = 1


Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 60
           +I APK LADIVESTIGAVF D NSID VW+ FK+L+EP+I   T+K HP+T+L E+CQK
Sbjct: 157 LIDAPKNLADIVESTIGAVFMDCNSIDTVWEAFKDLLEPIINPGTIKTHPVTQLYEICQK 216

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYR-KKLIAQNRAAKNALDNL 110
            NLKL F D W+E+  +EV I  ++VG+G+Y  KK +AQNRAAK+ALDN+
Sbjct: 217 NNLKLRFVDLWEESHTVEVFINNEIVGRGTYSLKKEVAQNRAAKDALDNI 266

[Close]

BLAST of MELO3C018835T1 vs. NCBI nr
Match: gi|743926079|ref|XP_011007194.1| (PREDICTED: ribonuclease 3-like protein 3 isoform X1 [Populus euphratica])

HSP 1 Score: 139.0 bits (349), Expect = 5.4e-30
Identity = 69/111 (62.16%), Postives = 90/111 (81.08%), Query Frame = 1


Query: 1   MIKAPKVLADIVESTIGAVFADSN-SIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQ 60
           ++ APK LADIVE+ IGAVF DSN SID+VWKIFK L+EP+I+ +T+K HP+TEL E+CQ
Sbjct: 170 LVDAPKALADIVEAAIGAVFIDSNFSIDVVWKIFKNLLEPIISQETLKVHPVTELYEVCQ 229

Query: 61  KRNLKLEFRDRWQETKEIEVLIEKQLVGKGSY-RKKLIAQNRAAKNALDNL 110
           KRNLK++F D W+E    +V I+ Q VG+G+Y  KK IAQNRAA+NAL+N+
Sbjct: 230 KRNLKVKFVDLWKENTAFDVFIDDQFVGRGTYGLKKEIAQNRAAENALNNI 280

The following BLAST results are available for this feature:

BLAST of MELO3C018835T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RTL3_ORYSJ	4.5e-24	51.33	Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica GN=Os06g0358800 PE...	[more]
DCL1_ARATH	5.8e-16	44.34	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2	[more]
DCL1_ORYSJ	7.6e-16	42.45	Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV...	[more]
RTL2_ORYSJ	8.4e-15	40.18	Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica GN=Os05g0271300 PE...	[more]
RTL2_ARATH	7.9e-13	36.44	Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana GN=RTL2 PE=1 SV=1	[more]

BLAST of MELO3C018835T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1J8_CUCSA	1.7e-59	94.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G041940 PE=4 SV=1	[more]
A0A067K3V1_JATCU	3.8e-30	61.26	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13725 PE=4 SV=1	[more]
B9GTV4_POPTR	4.9e-30	61.26	Ribonuclease 3 family protein OS=Populus trichocarpa GN=POPTR_0002s21490g PE=4 S...	[more]
M5WYY1_PRUPE	1.1e-29	60.91	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024586mg PE=4 S...	[more]
V4UEZ0_9ROSI	1.1e-29	60.71	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016164mg PE=4 SV=1	[more]

BLAST of MELO3C018835T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15417.1	5.2e-31	58.77	RNAse II-like 1	[more]
AT1G01040.2	3.3e-17	44.34	dicer-like 1	[more]
AT3G20420.1	4.4e-14	36.44	RNAse THREE-like protein 2	[more]
AT3G03300.1	6.6e-10	35.59	dicer-like 2	[more]
AT5G20320.1	1.5e-06	28.95	dicer-like 4	[more]

BLAST of MELO3C018835T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110883\|ref\|XP_008455460.1\|	8.3e-63	100.00	PREDICTED: ribonuclease 3-like protein 3 [Cucumis melo]	[more]
gi\|449453708\|ref\|XP_004144598.1\|	2.5e-59	94.31	PREDICTED: ribonuclease 3-like protein 3 [Cucumis sativus]	[more]
gi\|694377586\|ref\|XP_009365085.1\|	8.4e-31	62.73	PREDICTED: ribonuclease 3-like protein 3 [Pyrus x bretschneideri]	[more]
gi\|645247882\|ref\|XP_008230046.1\|	4.2e-30	61.82	PREDICTED: ribonuclease 3-like protein 3 [Prunus mume]	[more]
gi\|743926079\|ref\|XP_011007194.1\|	5.4e-30	62.16	PREDICTED: ribonuclease 3-like protein 3 isoform X1 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000999	RNase_III_dom
IPR014720	dsRBD_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004525	ribonuclease III activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0003723	RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C018835	MELO3C018835	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C018835T1	MELO3C018835T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018835T1.cds2	MELO3C018835T1.cds2	CDS
MELO3C018835T1.cds1	MELO3C018835T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000999	Ribonuclease III domain	GENE3D	G3DSA:1.10.1520.10		coord: 4..43 score: 1.
IPR000999	Ribonuclease III domain	PROFILE	PS50142	RNASE_3_2	coord: 1..24 score: 9
IPR014720	Double-stranded RNA-binding domain	GENE3D	G3DSA:3.30.160.20		coord: 48..109 score: 9.
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 50..109 score: 4.
None	No IPR available	PANTHER	PTHR14950	HELICASE-RELATED	coord: 1..110 score: 4.7
None	No IPR available	PANTHER	PTHR14950:SF29	SUBFAMILY NOT NAMED	coord: 1..110 score: 4.7
None	No IPR available	unknown	SSF54768	dsRNA-binding domain-like	coord: 6..109 score: 4.71