MELO3C018787 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018787
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGeranylgeranyl transferase type-2 subunit beta
Locationchr1 : 2817911 .. 2819289 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATGACCGATATCAAATGGAGGAAGGAAAATTGAGAGAAGAAAAGGAAGAGGGAAAAGGAAAATTAAGAGTAATTTTGGCCAATGACGATGAAATCAAGAGGACAAAATTCTTAAGTTTCAAAAAGTTGAGCAAAACCCATTTTGGAGTTTGGGATTGGGTCTGTTATACAAATTTATTGTATCCGTTCATTCATACTCTTAGATTGTAGATTGCTATCCATTTATTACATGTATGTATCCCATCTTAGGTCGTTTACTTTTATGCACAGAGAAAGGATGATTTTCAATCTGTGATGATGGAATATGTTAGAACGAATGGTCCATACTGGGGGTTACCACATTGGATATATTGGAAAGCTAGATATTGTGGATGTTGATGTAGTCGTTTCCTGGGTCTTGAAATGTTAGCACGAGTCAGGTCTATAACATTCTCTACTGTCTCAACTTGTATGTCTTTTAGTCTACGTTAATGTGGATACATTTTATGGAATTGATGTATATGTTCAGTGTTGTGCCATTAGTATTGCACAACATACACATCAAACTATTCAATCTTCTGGCTTCTTTTTGTGTTCATACAAATTTATTACGGAGTCAAGTTGAAGAAAATTTCCTTTTATGCATGTTTGAGGATTTAGATGTGAACGTTGGATCATTTATAACAAAAGCAGAGAAGTGATTCCTGATATTGCAGGTGGTTTTTCTGGCAACACTGGTCATGATCAGCACATACTTTACACCCTTAGTGCCGTACAAGTCTTGGCCCTCTTTGACAAGTTGAATGTTTTAGATGTTGATAAGGTGACAGATTGTATCCTTTGGCACTTGGGAGTTGATTTTTAATTTATGCCAGTTTATTCTATTAGATCTGTTGTTTTGATTCATTTCACCCATAATTTTCATGAATTTTTAGGGAACAGTGACCTTTTTAATACGCTGAGTGGACAATTGATTACCACTACCCAACTACTTATTTCTAAATATTTCAGACATCCTCTATGTGTCGTCTACTTTTAGAGATTTCATATGCACCTGCTATTGAAAGTTGGTAATTGAGTTGAGTGTTAACTATATGTAAAAATTTATGTGAGGCTTAATCTTGTGGTAGATATTGTTGGTTTGCAAAATGAAGATGGTTCCTTCTCAAGAGACGTTTGGGATGAAGTAGATTCAAGGTAGTCTACTCATTTATTTGTTTATTTTTATTATTATTTTGGATTTCATGCTTCATGTGATCCTACATGCGTGATAATTTTTTAAAAACTGAATTTGTTTATCTTGTAGGTTTTCTTATATTGCAATATCTCATCTATCGTTATTACATCAACTGGAGAAGATCAATGTTGAGAAGGCTTTCGAACTACATTCTTAG

mRNA sequence

ATGGAGAATGACCGATATCAAATGGAGGAAGGAAAATTGAGAGAAGAAAAGGAAGAGGGAAAAGGAAAATTAAGAGTAATTTTGGCCAATGACGATGAAATCAAGAGGACAAAATTCTTAAGTTTCAAAAAGTTGAGCAAAACCCATTTTGGAGTTTGGGATTGGGTCTGTGGTTTTTCTGGCAACACTGGTCATGATCAGCACATACTTTACACCCTTAGTGCCGTACAAGTCTTGGCCCTCTTTGACAAGTTGAATGTTTTAGATGTTGATAAGGTGACAGATTATATTGTTGGTTTGCAAAATGAAGATGGTTCCTTCTCAAGAGACGTTTGGGATGAAGTAGATTCAAGGTTTTCTTATATTGCAATATCTCATCTATCGTTATTACATCAACTGGAGAAGATCAATGTTGAGAAGGCTTTCGAACTACATTCTTAG

Coding sequence (CDS)

ATGGAGAATGACCGATATCAAATGGAGGAAGGAAAATTGAGAGAAGAAAAGGAAGAGGGAAAAGGAAAATTAAGAGTAATTTTGGCCAATGACGATGAAATCAAGAGGACAAAATTCTTAAGTTTCAAAAAGTTGAGCAAAACCCATTTTGGAGTTTGGGATTGGGTCTGTGGTTTTTCTGGCAACACTGGTCATGATCAGCACATACTTTACACCCTTAGTGCCGTACAAGTCTTGGCCCTCTTTGACAAGTTGAATGTTTTAGATGTTGATAAGGTGACAGATTATATTGTTGGTTTGCAAAATGAAGATGGTTCCTTCTCAAGAGACGTTTGGGATGAAGTAGATTCAAGGTTTTCTTATATTGCAATATCTCATCTATCGTTATTACATCAACTGGAGAAGATCAATGTTGAGAAGGCTTTCGAACTACATTCTTAG

Protein sequence

MENDRYQMEEGKLREEKEEGKGKLRVILANDDEIKRTKFLSFKKLSKTHFGVWDWVCGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFELHS*
Homology
[Close]
BLAST of MELO3C018787 vs. Swiss-Prot
Match: PGTB2_ARATH (Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana GN=RGTB2 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.4e-31
Identity = 64/86 (74.42%), Postives = 75/86 (87.21%), Query Frame = 1 

Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF+GNTGHD H+LYTLSAVQ+LALFDKLN+LDV+KV++YI GLQNEDGSFS D+W EVD+
Sbjct: 73  GFAGNTGHDPHVLYTLSAVQILALFDKLNILDVEKVSNYIAGLQNEDGSFSGDIWGEVDT 132

Query: 118 RFSYIAISHLSLLHQLEKINVEKAFE 144
           RFSYIAI  LS+L  L+KINV+KA +
Sbjct: 133 RFSYIAICCLSILKCLDKINVKKAVD 158

[Close]
BLAST of MELO3C018787 vs. Swiss-Prot
Match: PGTB1_ARATH (Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana GN=RGTB1 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-29
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 1 

Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF+GNTGHD HILYTLSAVQ+LALFDK+N+LD+ KV+ Y+  LQNEDGSFS D+W E+D+
Sbjct: 78  GFAGNTGHDPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFSGDMWGEIDT 137

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAI  LS+L  L+KINVEKA
Sbjct: 138 RFSYIAICCLSILKCLDKINVEKA 161

[Close]
BLAST of MELO3C018787 vs. Swiss-Prot
Match: PGTB2_HUMAN (Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 SV=2)

HSP 1 Score: 116.3 bits (290), Expect = 2.8e-25
Identity = 56/110 (50.91%), Postives = 77/110 (70.00%), Query Frame = 1 

Query: 34  IKRTKFLSFKKLSKTHFGVWDWVCGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKV 93
           + R + L+F K  +   G      G S + GHD H+LYTLSAVQ+L L+D +NV+DV+KV
Sbjct: 66  MNREEILAFIKSCQHECG------GISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKV 125

Query: 94  TDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE 144
            +Y+ GLQ EDGSF+ D+W E+D+RFS+ A++ L+LL +L+ INVEKA E
Sbjct: 126 VEYVKGLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIE 169

[Close]
BLAST of MELO3C018787 vs. Swiss-Prot
Match: PGTB2_BOVIN (Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus GN=RABGGTB PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-24
Identity = 54/110 (49.09%), Postives = 76/110 (69.09%), Query Frame = 1 

Query: 34  IKRTKFLSFKKLSKTHFGVWDWVCGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKV 93
           + R + L+F K  +   G      G S + GHD H+LYTLSAVQ+L L+D +NV+D++KV
Sbjct: 66  MNREEILTFIKSCQHECG------GISASIGHDPHLLYTLSAVQILTLYDSINVIDINKV 125

Query: 94  TDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE 144
            +Y+  LQ EDGSF+ D+W E+D+RFS+ A++ L+LL +L+ INVEKA E
Sbjct: 126 VEYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIE 169

[Close]
BLAST of MELO3C018787 vs. Swiss-Prot
Match: PGTB2_DICDI (Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-23
Identity = 59/108 (54.63%), Postives = 68/108 (62.96%), Query Frame = 1 

Query: 41  SFKKLSKTHFGVWDWVC-----GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTD 100
           S  KL K     W   C     GF GNT HD H+L TLSAVQ+L  +D L+ +D++ V D
Sbjct: 66  SLDKLDKNEVIQWLLSCQKSNGGFGGNTSHDDHLLSTLSAVQILIQYDALDKIDINSVVD 125

Query: 101 YIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE 144
           Y+V LQ EDGSF  D W EVD+RFSY AI  LSLL  L+KIN EKA E
Sbjct: 126 YVVKLQREDGSFVGDQWGEVDTRFSYAAIMCLSLLKSLDKINCEKAVE 173


HSP 2 Score: 30.0 bits (66), Expect = 2.6e+01
Identity = 18/61 (29.51%), Postives = 29/61 (47.54%), Query Frame = 1 

Query: 83  DKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAF 142
           D    L +DK  +YIV L ++  SF   V + +     Y  +S L LL  L+K++  +  
Sbjct: 17  DHTTNLLIDKHVEYIVKLGSKKDSFEYWVTEHIRMNGMYWGLSSLYLLKSLDKLDKNEVI 76

Query: 143 E 144
           +
Sbjct: 77  Q 77

[Close]
BLAST of MELO3C018787 vs. TrEMBL
Match: A0A0A0K723_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433280 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.7e-33
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 1 

Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GFSGN GHD HILYTLSAVQVLALFDKL+VLDVDKVT+Y+VGLQNEDGSFS D+W EVDS
Sbjct: 70  GFSGNVGHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSFSGDIWGEVDS 129

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAI  LSLLHQL+KINVEKA
Sbjct: 130 RFSYIAILCLSLLHQLDKINVEKA 153

[Close]
BLAST of MELO3C018787 vs. TrEMBL
Match: Q6X0N9_SOYBN (Putative Rab geranylgeranyl transferase type II beta subunit OS=Glycine max PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-30
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 1 

Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF GN GHD HILYTLSAVQVLALFDKLNV+DVDKVT YIV LQNEDGSFS D+W EVD+
Sbjct: 70  GFGGNVGHDPHILYTLSAVQVLALFDKLNVIDVDKVTSYIVSLQNEDGSFSGDMWGEVDT 129

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAI  LS+LH L+KINVEKA
Sbjct: 130 RFSYIAICCLSILHCLDKINVEKA 153

[Close]
BLAST of MELO3C018787 vs. TrEMBL
Match: I1KS88_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G111200 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-30
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 1 

Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF GN GHD HILYTLSAVQVLALFDKLNV+DVDKVT YIV LQNEDGSFS D+W EVD+
Sbjct: 70  GFGGNVGHDPHILYTLSAVQVLALFDKLNVIDVDKVTSYIVSLQNEDGSFSGDMWGEVDT 129

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAI  LS+LH L+KINVEKA
Sbjct: 130 RFSYIAICCLSILHCLDKINVEKA 153

[Close]
BLAST of MELO3C018787 vs. TrEMBL
Match: A0A0B2SUM0_GLYSO (Geranylgeranyl transferase type-2 subunit beta OS=Glycine soja GN=glysoja_015417 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-30
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 1 

Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF GN GHD HILYTLSAVQVLALFDKLNV+DVDKVT YIV LQNEDGSFS D+W EVD+
Sbjct: 81  GFGGNVGHDPHILYTLSAVQVLALFDKLNVIDVDKVTSYIVSLQNEDGSFSGDMWGEVDT 140

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAI  LS+LH L+KINVEKA
Sbjct: 141 RFSYIAICCLSILHCLDKINVEKA 164

[Close]
BLAST of MELO3C018787 vs. TrEMBL
Match: F6I5I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00080 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.4e-30
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 1 

Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF GN GHD HILYTLSAVQVLALFDKLNVLD+DKV++YI GLQNEDGSFS D+W E+D+
Sbjct: 102 GFGGNVGHDPHILYTLSAVQVLALFDKLNVLDIDKVSNYIAGLQNEDGSFSGDMWGEIDT 161

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAI  LSLL +L+KINVEKA
Sbjct: 162 RFSYIAICSLSLLQRLDKINVEKA 185

[Close]
BLAST of MELO3C018787 vs. TAIR10
Match: AT3G12070.1 (AT3G12070.1 RAB geranylgeranyl transferase beta subunit 2)

HSP 1 Score: 136.0 bits (341), Expect = 1.9e-32
Identity = 64/86 (74.42%), Postives = 75/86 (87.21%), Query Frame = 1 

Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF+GNTGHD H+LYTLSAVQ+LALFDKLN+LDV+KV++YI GLQNEDGSFS D+W EVD+
Sbjct: 73  GFAGNTGHDPHVLYTLSAVQILALFDKLNILDVEKVSNYIAGLQNEDGSFSGDIWGEVDT 132

Query: 118 RFSYIAISHLSLLHQLEKINVEKAFE 144
           RFSYIAI  LS+L  L+KINV+KA +
Sbjct: 133 RFSYIAICCLSILKCLDKINVKKAVD 158

[Close]
BLAST of MELO3C018787 vs. TAIR10
Match: AT5G12210.1 (AT5G12210.1 RAB geranylgeranyl transferase beta subunit 1)

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-30
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 1 

Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF+GNTGHD HILYTLSAVQ+LALFDK+N+LD+ KV+ Y+  LQNEDGSFS D+W E+D+
Sbjct: 78  GFAGNTGHDPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFSGDMWGEIDT 137

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAI  LS+L  L+KINVEKA
Sbjct: 138 RFSYIAICCLSILKCLDKINVEKA 161

[Close]
BLAST of MELO3C018787 vs. NCBI nr
Match: gi|778729139|ref|XP_011659536.1| (PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 1.4e-32
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 1 

Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GFSGN GHD HILYTLSAVQVLALFDKL+VLDVDKVT+Y+VGLQNEDGSFS D+W EVDS
Sbjct: 70  GFSGNVGHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSFSGDIWGEVDS 129

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAI  LSLLHQL+KINVEKA
Sbjct: 130 RFSYIAILCLSLLHQLDKINVEKA 153

[Close]
BLAST of MELO3C018787 vs. NCBI nr
Match: gi|659122320|ref|XP_008461078.1| (PREDICTED: geranylgeranyl transferase type-2 subunit beta [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 3.1e-32
Identity = 72/84 (85.71%), Postives = 78/84 (92.86%), Query Frame = 1 

Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF+GN GHD HILYTLSAVQVLALFDKL+VLDVDKVT+Y+VGLQNEDGSFS D+W EVDS
Sbjct: 70  GFAGNVGHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSFSGDIWGEVDS 129

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAI  LSLLHQL+KINVEKA
Sbjct: 130 RFSYIAILCLSLLHQLDKINVEKA 153

[Close]
BLAST of MELO3C018787 vs. NCBI nr
Match: gi|659122320|ref|XP_008461078.1| (PREDICTED: geranylgeranyl transferase type-2 subunit beta [Cucumis melo])

HSP 1 Score: 41.2 bits (95), Expect = 1.8e+00
Identity = 18/62 (29.03%), Postives = 38/62 (61.29%), Query Frame = 1 

Query: 79  LALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINV 138
           L +  KLN++D D+V  +++  Q+E G F+ +V  +    ++  A+  L+L  +L+ ++V
Sbjct: 43  LDILGKLNIVDADEVVSWVMSCQHESGGFAGNVGHDPHILYTLSAVQVLALFDKLDVLDV 102

Query: 139 EK 141
           +K
Sbjct: 103 DK 104


HSP 2 Score: 139.8 bits (351), Expect = 3.8e-30
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 1 

Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF GN GHD HILYTLSAVQVLALFDKLNV+DVDKVT YIV LQNEDGSFS D+W EVD+
Sbjct: 70  GFGGNVGHDPHILYTLSAVQVLALFDKLNVIDVDKVTSYIVSLQNEDGSFSGDMWGEVDT 129

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAI  LS+LH L+KINVEKA
Sbjct: 130 RFSYIAICCLSILHCLDKINVEKA 153

[Close]
BLAST of MELO3C018787 vs. NCBI nr
Match: gi|947094204|gb|KRH42789.1| (hypothetical protein GLYMA_08G111200 [Glycine max])

HSP 1 Score: 139.8 bits (351), Expect = 3.8e-30
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 1 

Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF GN GHD HILYTLSAVQVLALFDKLNV+DVDKVT YIV LQNEDGSFS D+W EVD+
Sbjct: 70  GFGGNVGHDPHILYTLSAVQVLALFDKLNVIDVDKVTSYIVSLQNEDGSFSGDMWGEVDT 129

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAI  LS+LH L+KINVEKA
Sbjct: 130 RFSYIAICCLSILHCLDKINVEKA 153

[Close]
BLAST of MELO3C018787 vs. NCBI nr
Match: gi|734436243|gb|KHN47947.1| (Geranylgeranyl transferase type-2 subunit beta [Glycine soja])

HSP 1 Score: 139.8 bits (351), Expect = 3.8e-30
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 1 

Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF GN GHD HILYTLSAVQVLALFDKLNV+DVDKVT YIV LQNEDGSFS D+W EVD+
Sbjct: 81  GFGGNVGHDPHILYTLSAVQVLALFDKLNVIDVDKVTSYIVSLQNEDGSFSGDMWGEVDT 140

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAI  LS+LH L+KINVEKA
Sbjct: 141 RFSYIAICCLSILHCLDKINVEKA 164

The following BLAST results are available for this feature:
BLAST of MELO3C018787 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGTB2_ARATH3.4e-3174.42Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana GN=RGTB... [more]
PGTB1_ARATH1.9e-2972.62Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana GN=RGTB... [more]
PGTB2_HUMAN2.8e-2550.91Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 S... [more]
PGTB2_BOVIN1.8e-2449.09Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus GN=RABGGTB PE=2 SV=... [more]
PGTB2_DICDI1.2e-2354.63Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoid... [more]
BLAST of MELO3C018787 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K723_CUCSA9.7e-3386.90Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433280 PE=4 SV=1[more]
Q6X0N9_SOYBN2.6e-3082.14Putative Rab geranylgeranyl transferase type II beta subunit OS=Glycine max PE=4... [more]
I1KS88_SOYBN2.6e-3082.14Uncharacterized protein OS=Glycine max GN=GLYMA_08G111200 PE=4 SV=1[more]
A0A0B2SUM0_GLYSO2.6e-3082.14Geranylgeranyl transferase type-2 subunit beta OS=Glycine soja GN=glysoja_015417... [more]
F6I5I6_VITVI3.4e-3079.76Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00080 PE=4 SV=... [more]
BLAST of MELO3C018787 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G12070.11.9e-3274.42 RAB geranylgeranyl transferase beta subunit 2[more]
AT5G12210.11.1e-3072.62 RAB geranylgeranyl transferase beta subunit 1[more]
BLAST of MELO3C018787 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778729139|ref|XP_011659536.1|1.4e-3286.90PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Cucumis sativus][more]
gi|659122320|ref|XP_008461078.1|3.1e-3285.71PREDICTED: geranylgeranyl transferase type-2 subunit beta [Cucumis melo][more]
gi|659122320|ref|XP_008461078.1|1.8e+0029.03PREDICTED: geranylgeranyl transferase type-2 subunit beta [Cucumis melo][more]
gi|947094204|gb|KRH42789.1|3.8e-3082.14hypothetical protein GLYMA_08G111200 [Glycine max][more]
gi|734436243|gb|KHN47947.1|3.8e-3082.14Geranylgeranyl transferase type-2 subunit beta [Glycine soja][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001330PFTB_repeat
IPR008930Terpenoid_cyclase/PrenylTrfase
IPR026873Ptb1
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004663Rab geranylgeranyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0018344protein geranylgeranylation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0018344 protein geranylgeranylation
biological_process GO:0018342 protein prenylation
biological_process GO:0008150 biological_process
cellular_component GO:0005968 Rab-protein geranylgeranyltransferase complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0004663 Rab geranylgeranyltransferase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018787T1MELO3C018787T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001330PFTB repeatPFAMPF00432Prenyltranscoord: 89..130
score: 1.0E-8coord: 58..81
score: 0
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidGENE3DG3DSA:1.50.10.20coord: 57..143
score: 6.9
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidunknownSSF48239Terpenoid cyclases/Protein prenyltransferasescoord: 57..143
score: 1.73
IPR026873Geranylgeranyl transferase type-2 subunit betaPANTHERPTHR11774:SF11GERANYLGERANYL TRANSFERASE TYPE-2 SUBUNIT BETAcoord: 56..143
score: 9.9
NoneNo IPR availablePANTHERPTHR11774GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNITcoord: 56..143
score: 9.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C018787Csa7G044960Cucumber (Chinese Long) v2cumeB530
MELO3C018787Cla007703Watermelon (97103) v1mewmB245
MELO3C018787ClCG02G001540Watermelon (Charleston Gray)mewcgB195
MELO3C018787Cla97C02G027990Watermelon (97103) v2mewmbB178
MELO3C018787Cucsa.148200Cucumber (Gy14) v1cgymeB248
MELO3C018787CsGy7G003700Cucumber (Gy14) v2cgybmeB468
MELO3C018787CsaV3_7G003900Cucumber (Chinese Long) v3cucmeB548
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C018787Silver-seed gourdcarmeB0033
MELO3C018787Silver-seed gourdcarmeB0640
MELO3C018787Silver-seed gourdcarmeB0715
MELO3C018787Silver-seed gourdcarmeB0865
MELO3C018787Cucumber (Chinese Long) v3cucmeB039
MELO3C018787Cucumber (Chinese Long) v3cucmeB473
MELO3C018787Watermelon (97103) v2mewmbB172
MELO3C018787Watermelon (97103) v2mewmbB191
MELO3C018787Wax gourdmewgoB212
MELO3C018787Wax gourdmewgoB236
MELO3C018787Melon (DHL92) v3.5.1memeB064
MELO3C018787Melon (DHL92) v3.5.1memeB100
MELO3C018787Cucumber (Gy14) v1cgymeB021
MELO3C018787Cucurbita maxima (Rimu)cmameB099
MELO3C018787Cucurbita maxima (Rimu)cmameB205
MELO3C018787Cucurbita maxima (Rimu)cmameB461
MELO3C018787Cucurbita maxima (Rimu)cmameB513
MELO3C018787Cucurbita maxima (Rimu)cmameB562
MELO3C018787Cucurbita moschata (Rifu)cmomeB090
MELO3C018787Cucurbita moschata (Rifu)cmomeB190
MELO3C018787Cucurbita moschata (Rifu)cmomeB452
MELO3C018787Cucurbita moschata (Rifu)cmomeB504
MELO3C018787Cucurbita moschata (Rifu)cmomeB553
MELO3C018787Wild cucumber (PI 183967)cpimeB040
MELO3C018787Wild cucumber (PI 183967)cpimeB538
MELO3C018787Wild cucumber (PI 183967)cpimeB462
MELO3C018787Cucumber (Chinese Long) v2cumeB040
MELO3C018787Watermelon (Charleston Gray)mewcgB208
MELO3C018787Watermelon (Charleston Gray)mewcgB194
MELO3C018787Watermelon (97103) v1mewmB225
MELO3C018787Watermelon (97103) v1mewmB238
MELO3C018787Cucurbita pepo (Zucchini)cpemeB223
MELO3C018787Cucurbita pepo (Zucchini)cpemeB273
MELO3C018787Cucurbita pepo (Zucchini)cpemeB481
MELO3C018787Cucurbita pepo (Zucchini)cpemeB609
MELO3C018787Cucurbita pepo (Zucchini)cpemeB683
MELO3C018787Bottle gourd (USVL1VR-Ls)lsimeB095
MELO3C018787Bottle gourd (USVL1VR-Ls)lsimeB130
MELO3C018787Bottle gourd (USVL1VR-Ls)lsimeB204