MELO3C018624.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018624.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	DNA repair protein XRCC4
Location	chr01 : 1571837 .. 1576184 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAAAAAATATACAATAATTTCTCGCGCCATAGGAAGAGACATAAGCTCCATTTTGAAAGGCGAAGTCAAAACAACTCCATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCCCAGCCGGACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCACCGTTTCGATCTCTCCATCACCGACGGCCTCCACGCTTGGACGTGCCATGGTTCCATTTCTTAAACTTCCACTCAATTTAACTTTGTTTAGTTTCTCTTCTATTCCGCTCATCTTTTGAATTTGTTCTCGTATTTTCTTTTTGTTATTACCCCATTTTGCCTGCGACAGCGACGGAGGATGAGGTTCGATTGCGCGCTGCACAATGGGACCAAGAACCGTCGGACTATGTGGCATTGGCCGAGCGCTATTTAGGGTTTCAACAGCCTGGTTCGATCTATGGCTTTGCCGATGCTGGAAATGGGTACAAGAGGGTTCGTACTTACTCCCTTTCGTTTTCTTTTCTTTTCTTTCTTTTTTTTTTTTTTTTTTTGCTCCCTTAGTCGATACTGATGAGGTAATAGAAGATTTTTTGGGTATTGTTCGTTGTATAGGTACTAGGAAATAGACGATCGGCTCACAATTTGGTTTTGATTTCGCCTCTTTGAATGCCTTCATTGTTGTTAAAGAGTAAATTGAATGGAAATCTGGATTCTGGCTGAAAAGTTTTAGCTTCCAGGTCTACTAGTGAGTTAACAGCAATGTGGTAATGGAGTATTGAAAAACAATATTTTAAAAAAATGCAGGTTCAAAACAACCTCTACAAGCTTATATGTGATACCTAAGACAAGGGAAGAACTTTTGTTTATGAAGCATAAAATTGGAGAATAAAGACATTTTTGAGAGATTCTTAAAAGAGTTTGATGTTCTTTTCTTATTTCTTTAAGATGGGAAACTAAAAAGAGAGTACCTTTAAGATGAAGTGAAGTGACATGTGTGCTATGTGCTGAGGCACTTGCAACAAAAGGATCAACTAAACATATACGAGAATAAAGTACACAATTGGTTGCTTAGTTTGGTTGGTGTCTATTTGGGGGTTTCTAAAGGACACTTTAGACCCTTATGTTTAGGAAATGGATCGACATGGCCCTTGAACATCTTTGACCATTAATAACTAACGTTAAAATGATTTGGCGGTTAAATTATAAACAACATTTTCTAATATGGGGAGATAGTTTAATTTAATAATATATTTTTATGACTAAAAATACTCTTTCCACGTTGCTTCCTCCTATGGTGAATCTTCCCATTGCTCGCCAATGCCCTTCTTATGCATGATTGAAGTGTTTATTGTGAAATCTCATGGACCAAATAGATACTAACCTCATATTTTAGGATCCAAAAGTGTAGTTTGTCTAGTATACTATTATATCAGGTTAAGCTTGGTTGAAATTTTTAAATCTACTATAAATTTAGGAATTCAATTATAATCATCAATCTATTTGGGTGAATTTGTTGGTTTCGGTATCTCATATACCAAGTAGGCAACTCTCTGTAGTTTAGGGGTCAAATGTGTAGTTTGTCTATACTCTATTTCACCAGGTTGTGCTTGGTTAAAATTTTTCAGTCTAGTTTAAATTTAAGAATTTGATTATAATCAACAGTCTCTTTGGGTGAACTTGGTGGTTTTGATACAAGAATATTGTGAATTTGGGAGAGGAATTCAGTTATCTAAATATTAAAGTTTGGGTTTTCATTTTAACTTTGGAACATATTGATTGGCACTTTGTACTGGTTCTTATGCAGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACAACTACAGCAGAAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGTAATACTATGCCTCCTTGTTGTGTTTACAATGTTTTAGATTTTCTCAAGGTTACTTCTATTCAGCTATTAGCCATACTTCTCATTAATTTTTTTAGCATATTTTTCAATGATTAATAGTTGCTTATTGGTGATTTACATGAATGGATTAACAAGATTGACAATTTCCCCTATCCAAGAAAAGGAAAATTACTGATGGTCTCCTATTTCATGACCATTGGATTGGAGTTTTTGTTCCAGCTTTGTTTTTCTACATCGAAGGACTTTAAAGTTGAATAGCTCTAGCACATGACTTGTAAAACAATGATCACAGCCCTCTGTTTGCTTCTATTATCTGATTGCTGTCTGAACATGTGGATAGTTATTTATCTTTTCCAAGTTTTGATATGGTGTCAGAAACATTAGTTACCATGTAAATTCCGAAGTACATTAATTTATTAAAAAGAGTCTGATTTGAAAGTCTATGAACTTCAAGTCATTCTTTATTTGAAATGTTGATTTTGTCATTCTGATTTCCTCTCTGTCACACTATGGCCTTTGAGTTTTTTCTTAAAGATGTTCAGTTGTCAACTTTTTCTTATAACTTATGCCTGCTTTATTTTTTGTATGAATAGGAAGAGGTTGTGAGAAAAACTCAATCAGTTGAGAGGCTGAAGGCAGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAAGTGGAGTTTGAAACTGCAATATATGCAAAGGTACGGGAAATTTCATATACTTGTGATTTGAACTTCACCCTATCTGTTTTCTTCTTTGTGATCTTGGTCAGTTTGAGACCATTCTGAATTAACTCTTCTTCAGAAATCACGCTACATTTAGCTTCAAAAGTGTAACATGATGCAATAAGTACATTTTCATTTTATCAATGCAGAAAATTTTGTTTCTCGTATTTGAAAGTGTAACATGATGTCTTTGTGGTAAGAAAAACTATTGTTCACATAATTGTGTTCTCTTTATAACATAGTTATATTAACCCAGACTCTAAAGTATCGGAAGAATAAATACTTATTCAATCCTGCAATCAGGAAATATTTCCTTTGGCATTAATCTACTTGTCAGATGTGTTTGTGCTTCATTGATCAAGGTCGGTAGGCTCCAGAAGTTGGTAAATTGGTATCGGGTATTCTGTTTCGATTTTCTCGTTGGAAATTCCCATTTTTGATTCCTTAGTGAAATATAGGATGGAAAAGTTATTTCTTGCTACCCCTATCATAACATGCATTATGGGGAATTTCTTCGATATATTCATAGATTTAGTGACGATGTCAATGTTCCCAGCCCAACACGACTGGGATTGAACTGGTTTATTTGCTTGAGACTTGAGCGAGAGATACAATGCCAAAGATTGCTGATTTGCCCGACTCCTATTTCACATCTGATCAAAACACAAGTTAATTGTATCGATACTGCACTCTCTTTCACATGTGTGGCTGATAGGGTTTGAGGGTTACAAAAAGGATACCCAACACGCCTTCGCTATTTGGAGGGAGCCTACTCATATCTTCGTGATAAATATTTTTGCAGAACGGATGTTGGTTAGAGCTTAAATTTATATTTGCATCAACTTCTATATGCAGTACATATCAAAATGCAATATCAATGAGAGCATAAAAGTAAATTCCCAAATCTCTGTGAGCTCATAATCTTTAATGAATGTTTCATCTATTTGTTAGGCCTCCAATTGTGACTACTTATATTAGAAGGGGTTAGAAAGGAAATGAGTATGAAGCCACTCGTTAGTTGGTTAGAGGTTAGTTTGTTTTGCTTTTTTGTTTAGGCTTGTGTATGGCAGAAGTCTATTAGTAGGTTGTCTTTTGGATGTTGGTTTATCTTTGGCATTTTGTAATAGAGCCATGGTTCTTAGGGAGAGGTACCCGCCTTGAATTGACCGGTTAGCTACTTTGTAATTGTTATTTGCAATCTATACTATCACCGGTGAGACCTGGAGTCTTTACACTACGCACCTCCTATTTCTTATTTGAAATCTTTAAATGTCTTTTTCATTGCTTCCAGTTTCTGAATGTCTTGAATGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCGAAACAAACCACTACCGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGAATCTTTTGACGATGAAAGCGATGCAGAAAAGAACTGACAGAGTCGTATGACTTGCAGATCAAGGAATGTTATATGTTAAGCTTTCTTTCTTTCTTATTTGAGCACAAAAACAAATTTGGAGATTGAGGATTTGAATCTTGTACTGATGAGCTATATTTATAGAGACAGCAACGACACAGACTACACTTTGGAAAAAAAATATATATATATATATATTATTGTTGGATTTTGGCTTTGGCTAAAA

mRNA sequence

CTTAAAAAATATACAATAATTTCTCGCGCCATAGGAAGAGACATAAGCTCCATTTTGAAAGGCGAAGTCAAAACAACTCCATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCCCAGCCGGACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCACCGTTTCGATCTCTCCATCACCGACGGCCTCCACGCTTGGACGTGCCATGCGACGGAGGATGAGGTTCGATTGCGCGCTGCACAATGGGACCAAGAACCGTCGGACTATGTGGCATTGGCCGAGCGCTATTTAGGGTTTCAACAGCCTGGTTCGATCTATGGCTTTGCCGATGCTGGAAATGGGTACAAGAGGGTTCTCGATACTGATGAGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACAACTACAGCAGAAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAACTCAATCAGTTGAGAGGCTGAAGGCAGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAAGTGGAGTTTGAAACTGCAATATATGCAAAGTTTCTGAATGTCTTGAATGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCGAAACAAACCACTACCGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGAATCTTTTGACGATGAAAGCGATGCAGAAAAGAACTGACAGAGTCGTATGACTTGCAGATCAAGGAATGTTATATGTTAAGCTTTCTTTCTTTCTTATTTGAGCACAAAAACAAATTTGGAGATTGAGGATTTGAATCTTGTACTGATGAGCTATATTTATAGAGACAGCAACGACACAGACTACACTTTGGAAAAAAAATATATATATATATATATTATTGTTGGATTTTGGCTTTGGCTAAAA

Coding sequence (CDS)

ATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCCCAGCCGGACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCACCGTTTCGATCTCTCCATCACCGACGGCCTCCACGCTTGGACGTGCCATGCGACGGAGGATGAGGTTCGATTGCGCGCTGCACAATGGGACCAAGAACCGTCGGACTATGTGGCATTGGCCGAGCGCTATTTAGGGTTTCAACAGCCTGGTTCGATCTATGGCTTTGCCGATGCTGGAAATGGGTACAAGAGGGTTCTCGATACTGATGAGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACAACTACAGCAGAAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAACTCAATCAGTTGAGAGGCTGAAGGCAGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAAGTGGAGTTTGAAACTGCAATATATGCAAAGTTTCTGAATGTCTTGAATGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCGAAACAAACCACTACCGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGAATCTTTTGACGATGAAAGCGATGCAGAAAAGAACTGA

Protein sequence

MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRWKCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN

Homology

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BLAST of MELO3C018624.2 vs. NCBI nr
Match: XP_008455175.1 (PREDICTED: DNA repair protein XRCC4 [Cucumis melo])

HSP 1 Score: 422.9 bits (1086), Expect = 7.1e-115
Identity = 233/239 (97.49%), Postives = 233/239 (97.49%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRW 120
           AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKR      LSWTFDKEGMKLEWRW
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKR------LSWTFDKEGMKLEWRW 120

Query: 121 KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE 180
           KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE
Sbjct: 121 KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE 180

Query: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 240
           FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233

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BLAST of MELO3C018624.2 vs. NCBI nr
Match: XP_004136882.1 (PREDICTED: DNA repair protein XRCC4 [Cucumis sativus] >KGN43738.1 hypothetical protein Csa_7G064000 [Cucumis sativus])

HSP 1 Score: 401.7 bits (1031), Expect = 1.7e-108
Identity = 224/239 (93.72%), Postives = 226/239 (94.56%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ERSSIFVKGTWNH RFDLSITDG HAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRW 120
           AQWDQEPSDYVALAERYLGFQQPGSIY FADAGNGYKR      LSWTFDKEGMKLEWRW
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKR------LSWTFDKEGMKLEWRW 120

Query: 121 KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE 180
           KCQPASDNKTTTA ILNFLMDANIRLSEEVVR  XXXXXXXXXXXXXXXXXXXICDEKVE
Sbjct: 121 KCQPASDNKTTTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVE 180

Query: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 240
           FETAIYAKFLNVLNAKKAKLREYRDQLS+QT TGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 233

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BLAST of MELO3C018624.2 vs. NCBI nr
Match: XP_022952201.1 (DNA repair protein XRCC4 [Cucurbita moschata])

HSP 1 Score: 367.5 bits (942), Expect = 3.5e-98
Identity = 187/239 (78.24%), Postives = 198/239 (82.85%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPD R SIFVKGTW  HRFDLSITDGL+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRW 120
            QWDQEPSDYV+LAERYLGFQQP S+YGFAD GNG KR      LSWTF+KEGMKLEWRW
Sbjct: 61  EQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKR------LSWTFNKEGMKLEWRW 120

Query: 121 KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE 180
           KC+ ASDNKTTTA IL+FLMDANIRLSEEVVRKT                   IC+EKVE
Sbjct: 121 KCRQASDNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVE 180

Query: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 240
           FETA+YAKFLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKTESFDD+SDAEKN
Sbjct: 181 FETALYAKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDAEKN 233

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BLAST of MELO3C018624.2 vs. NCBI nr
Match: XP_022971995.1 (DNA repair protein XRCC4 isoform X1 [Cucurbita maxima])

HSP 1 Score: 364.4 bits (934), Expect = 3.0e-97
Identity = 186/239 (77.82%), Postives = 196/239 (82.01%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPD R SIFVKGTW  HRFDLSITDGL+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRW 120
            QWDQEPSDYV LAERYLGFQQP S+Y FAD GNG KR      LSWTF+KEGMKLEWRW
Sbjct: 61  EQWDQEPSDYVGLAERYLGFQQPDSVYDFADVGNGDKR------LSWTFNKEGMKLEWRW 120

Query: 121 KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE 180
           KC+ ASDNKTTTA IL+FLMDANIRLSEEVVRKT                   IC+EKVE
Sbjct: 121 KCRQASDNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVE 180

Query: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 240
           FETA+YAKFLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKTESFDD+SDAEKN
Sbjct: 181 FETALYAKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDAEKN 233

[Close]

BLAST of MELO3C018624.2 vs. NCBI nr
Match: XP_023553967.1 (DNA repair protein XRCC4 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 363.6 bits (932), Expect = 5.1e-97
Identity = 185/239 (77.41%), Postives = 198/239 (82.85%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKL+VPT+AQPD R SIFVKGTW  HRFDLSITDGL+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLQVPTDAQPDGRVSIFVKGTWYPHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRW 120
            QWDQEPSDYV+LAERYLGFQQP S+YGFAD GNG KR      LSWTF+KEGMKLEWRW
Sbjct: 61  EQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKR------LSWTFNKEGMKLEWRW 120

Query: 121 KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE 180
           KC+ ASDNKTTTA IL+FLMDANIRLSEEVVRKT                   IC+EKVE
Sbjct: 121 KCRQASDNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVE 180

Query: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 240
           FETA+YAKFLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKTESFDD+SDAEKN
Sbjct: 181 FETALYAKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDAEKN 233

[Close]

BLAST of MELO3C018624.2 vs. TAIR10
Match: AT3G23100.1 (homolog of human DNA ligase iv-binding protein XRCC4)

HSP 1 Score: 234.2 bits (596), Expect = 8.4e-62
Identity = 118/202 (58.42%), Postives = 144/202 (71.29%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQWD 64
           +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG  +W C+ATE+EV  RAAQWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRWKCQP 124
           Q  S+Y+ LAE+YLGFQQP S+Y F+DA  G KR      LSWTF+KEG KLEWRWKC+P
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKR------LSWTFEKEGTKLEWRWKCKP 143

Query: 125 ASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVEFETA 184
           + D+K  T  IL+FLM+ANIRLSEEVV KT                   +CDEK EFE+A
Sbjct: 144 SDDSKKITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESA 203

Query: 185 IYAKFLNVLNAKKAKLREYRDQ 207
            YAKFL+VLNAKKAKLR  RD+
Sbjct: 204 TYAKFLSVLNAKKAKLRALRDK 213

[Close]

BLAST of MELO3C018624.2 vs. TAIR10
Match: AT1G61410.1 (DNA double-strand break repair and VJ recombination XRCC4)

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-12
Identity = 38/66 (57.58%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 140 MDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVEFETAIYAKFLNVLNAKKAK 199
           M+ANIRLSEEVV KT                   +CDEK EFE A YAKFL+VLNAKKAK
Sbjct: 1   MEANIRLSEEVVNKTRSFEKMKSEAERCLAQGEKLCDEKTEFENATYAKFLSVLNAKKAK 60

Query: 200 LREYRD 206
           LR  RD
Sbjct: 61  LRAVRD 66

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BLAST of MELO3C018624.2 vs. Swiss-Prot
Match: sp|Q682V0|XRCC4_ARATH (DNA repair protein XRCC4 OS=Arabidopsis thaliana OX=3702 GN=XRCC4 PE=1 SV=2)

HSP 1 Score: 234.2 bits (596), Expect = 1.5e-60
Identity = 118/202 (58.42%), Postives = 144/202 (71.29%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQWD 64
           +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG  +W C+ATE+EV  RAAQWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRWKCQP 124
           Q  S+Y+ LAE+YLGFQQP S+Y F+DA  G KR      LSWTF+KEG KLEWRWKC+P
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKR------LSWTFEKEGTKLEWRWKCKP 143

Query: 125 ASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVEFETA 184
           + D+K  T  IL+FLM+ANIRLSEEVV KT                   +CDEK EFE+A
Sbjct: 144 SDDSKKITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESA 203

Query: 185 IYAKFLNVLNAKKAKLREYRDQ 207
            YAKFL+VLNAKKAKLR  RD+
Sbjct: 204 TYAKFLSVLNAKKAKLRALRDK 213

[Close]

BLAST of MELO3C018624.2 vs. TrEMBL
Match: tr|A0A1S3BZW1|A0A1S3BZW1_CUCME (DNA repair protein XRCC4 OS=Cucumis melo OX=3656 GN=LOC103495407 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 4.7e-115
Identity = 233/239 (97.49%), Postives = 233/239 (97.49%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRW 120
           AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKR      LSWTFDKEGMKLEWRW
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKR------LSWTFDKEGMKLEWRW 120

Query: 121 KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE 180
           KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE
Sbjct: 121 KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE 180

Query: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 240
           FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233

[Close]

BLAST of MELO3C018624.2 vs. TrEMBL
Match: tr|A0A0A0K2L2|A0A0A0K2L2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064000 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.1e-108
Identity = 224/239 (93.72%), Postives = 226/239 (94.56%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ERSSIFVKGTWNH RFDLSITDG HAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRW 120
           AQWDQEPSDYVALAERYLGFQQPGSIY FADAGNGYKR      LSWTFDKEGMKLEWRW
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKR------LSWTFDKEGMKLEWRW 120

Query: 121 KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE 180
           KCQPASDNKTTTA ILNFLMDANIRLSEEVVR  XXXXXXXXXXXXXXXXXXXICDEKVE
Sbjct: 121 KCQPASDNKTTTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVE 180

Query: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 240
           FETAIYAKFLNVLNAKKAKLREYRDQLS+QT TGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 233

[Close]

BLAST of MELO3C018624.2 vs. TrEMBL
Match: tr|A0A2R6Q3G5|A0A2R6Q3G5_ACTCH (DNA repair protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc22757 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 6.8e-74
Identity = 149/236 (63.14%), Postives = 175/236 (74.15%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQWD 64
           RHTCLKLE+PTN++ D    IFVKGTW   RFDL+ITDGLHAW+ +ATEDEVR RA+QWD
Sbjct: 6   RHTCLKLELPTNSESDRTEPIFVKGTWLASRFDLAITDGLHAWSLYATEDEVRERASQWD 65

Query: 65  QEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRWKCQP 124
           Q   DY+ LAER+LGFQQPGS+YGFADAGNG +R      LSWTF+K+G KLEWRWKC+P
Sbjct: 66  QTVPDYIELAERHLGFQQPGSVYGFADAGNGNRR------LSWTFEKKGTKLEWRWKCKP 125

Query: 125 ASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVEFETA 184
           + D+K TTA IL+FLMDANIRLS+EVVRKT                     +EK +FE A
Sbjct: 126 SLDSKKTTAGILDFLMDANIRLSDEVVRKTQSVERLRGEAEKCLAQSEKFSNEKADFEDA 185

Query: 185 IYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEE-YSSDKTESFDDESDAEKN 240
           IYAKFL VLN+KKAKLRE RD+ SKQ  TG   ++EE  S+DKTESFD ESD  K+
Sbjct: 186 IYAKFLGVLNSKKAKLRELRDRFSKQENTGKMPREEEGESTDKTESFDGESDDGKS 235

[Close]

BLAST of MELO3C018624.2 vs. TrEMBL
Match: tr|A0A2H3X235|A0A2H3X235_PHODC (DNA repair protein XRCC4 OS=Phoenix dactylifera OX=42345 GN=LOC103697127 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.1e-70
Identity = 138/233 (59.23%), Postives = 173/233 (74.25%), Query Frame = 0


Query: 3   AIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQ 62
           ++RHTCLKL++P    P  + +IF+KGTW    F L+ITDGL+AWTC A+E+EVR RA Q
Sbjct: 4   SVRHTCLKLDLPVE-DPKVKDAIFIKGTWFPSHFHLAITDGLNAWTCRASEEEVRQRAEQ 63

Query: 63  WDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRWKC 122
           WDQ P++YVALAERYLGF+QPGS YGF DAG+G KR      LSWTF+K+G K+EWRWKC
Sbjct: 64  WDQPPAEYVALAERYLGFRQPGSKYGFDDAGHGQKR------LSWTFEKQGTKMEWRWKC 123

Query: 123 QPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVEFE 182
           QP+S+NK TT+EIL+FLMDANI LSEEVVRKT                     +EK EFE
Sbjct: 124 QPSSNNKQTTSEILDFLMDANIHLSEEVVRKTQSLEKLKAEAERCLLQSEKFNNEKAEFE 183

Query: 183 TAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESD 236
           +A+Y+KF+ VLN+KKAKLRE RD++SK   TG   K+E+ S+DKTE+FD+ SD
Sbjct: 184 SAVYSKFVAVLNSKKAKLRELRDRISKLEATGKSSKEEDDSTDKTETFDEGSD 229

[Close]

BLAST of MELO3C018624.2 vs. TrEMBL
Match: tr|D7T7A5|D7T7A5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g04910 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 3.5e-70
Identity = 141/233 (60.52%), Postives = 173/233 (74.25%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQWD 64
           RH+CLKL++P  ++P     IF+K TW    F LSITDGLHAW C+A+EDEVR RAAQWD
Sbjct: 6   RHSCLKLQIPNQSEP-----IFIKATWFPSHFHLSITDGLHAWLCNASEDEVRERAAQWD 65

Query: 65  QEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRWKCQP 124
           Q  SDY+ALAER+LGFQQPGS+YGF+DAG+G++R      LSWTF+KEG KLEWRWKC  
Sbjct: 66  QPVSDYIALAERFLGFQQPGSVYGFSDAGDGHRR------LSWTFEKEGTKLEWRWKCGL 125

Query: 125 ASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVEFETA 184
           + D+++TTA +L+FLM+ANIRLSEEVV KT                     +EK EFE+A
Sbjct: 126 SPDSRSTTAGVLDFLMNANIRLSEEVVIKTQSFERLKVEAEKCLAQSEKFNNEKAEFESA 185

Query: 185 IYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAE 238
           IYAKFL VLN+KKAKLRE RDQ+SK+ TTG   ++E+ S+DKT SFDDESD E
Sbjct: 186 IYAKFLGVLNSKKAKLRELRDQISKEETTGKLPQEEDESTDKTLSFDDESDNE 227

The following BLAST results are available for this feature:

BLAST of MELO3C018624.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455175.1	7.1e-115	97.49	PREDICTED: DNA repair protein XRCC4 [Cucumis melo]	[more]
XP_004136882.1	1.7e-108	93.72	PREDICTED: DNA repair protein XRCC4 [Cucumis sativus] >KGN43738.1 hypothetical p...	[more]
XP_022952201.1	3.5e-98	78.24	DNA repair protein XRCC4 [Cucurbita moschata]	[more]
XP_022971995.1	3.0e-97	77.82	DNA repair protein XRCC4 isoform X1 [Cucurbita maxima]	[more]
XP_023553967.1	5.1e-97	77.41	DNA repair protein XRCC4 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C018624.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23100.1	8.4e-62	58.42	homolog of human DNA ligase iv-binding protein XRCC4	[more]
AT1G61410.1	2.8e-12	57.58	DNA double-strand break repair and VJ recombination XRCC4	[more]

BLAST of MELO3C018624.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q682V0\|XRCC4_ARATH	1.5e-60	58.42	DNA repair protein XRCC4 OS=Arabidopsis thaliana OX=3702 GN=XRCC4 PE=1 SV=2	[more]

BLAST of MELO3C018624.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BZW1\|A0A1S3BZW1_CUCME	4.7e-115	97.49	DNA repair protein XRCC4 OS=Cucumis melo OX=3656 GN=LOC103495407 PE=4 SV=1	[more]
tr\|A0A0A0K2L2\|A0A0A0K2L2_CUCSA	1.1e-108	93.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064000 PE=4 SV=1	[more]
tr\|A0A2R6Q3G5\|A0A2R6Q3G5_ACTCH	6.8e-74	63.14	DNA repair protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc...	[more]
tr\|A0A2H3X235\|A0A2H3X235_PHODC	2.1e-70	59.23	DNA repair protein XRCC4 OS=Phoenix dactylifera OX=42345 GN=LOC103697127 PE=4 SV...	[more]
tr\|D7T7A5\|D7T7A5_VITVI	3.5e-70	60.52	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g04910 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006302	double-strand break repair
GO:0006310	DNA recombination

Vocabulary: **INTERPRO**
Term	Definition
IPR010585	DNA_repair_prot_XRCC4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006302	double-strand break repair
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018624.2.1	MELO3C018624.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 143..163
None	No IPR available	COILS	Coil	Coil	coord: 190..213
None	No IPR available	GENE3D	G3DSA:1.20.5.370		coord: 129..222 e-value: 7.4E-13 score: 50.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 219..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..239
None	No IPR available	PANTHER	PTHR28559	FAMILY NOT NAMED	coord: 1..236
None	No IPR available	SUPERFAMILY	SSF58022	XRCC4, C-terminal oligomerization domain	coord: 128..213
IPR010585	DNA repair protein XRCC4	PFAM	PF06632	XRCC4	coord: 35..234 e-value: 2.1E-14 score: 53.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C018624.2	Csa7G064000	Cucumber (Chinese Long) v2	cumedB509
MELO3C018624.2	CSPI07G05720	Wild cucumber (PI 183967)	cpimedB523
MELO3C018624.2	Cucsa.218100	Cucumber (Gy14) v1	cgymedB377
MELO3C018624.2	Lsi03G007440	Bottle gourd (USVL1VR-Ls)	lsimedB260
MELO3C018624.2	CsGy7G005430	Cucumber (Gy14) v2	cgybmedB465
MELO3C018624.2	Cla012874	Watermelon (97103) v1	medwmB203
MELO3C018624.2	ClCG09G015590	Watermelon (Charleston Gray)	medwcgB171
MELO3C018624.2	Bhi05G000729	Wax gourd	medwgoB220
MELO3C018624.2	Carg22824	Silver-seed gourd	carmedB0300
MELO3C018624.2	CsaV3_7G006710	Cucumber (Chinese Long) v3	cucmedB536

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018624.2	Cucurbita maxima (Rimu)	cmamedB106
MELO3C018624.2	Cucurbita maxima (Rimu)	cmamedB535
MELO3C018624.2	Cucurbita moschata (Rifu)	cmomedB091
MELO3C018624.2	Cucurbita moschata (Rifu)	cmomedB523
MELO3C018624.2	Cucurbita pepo (Zucchini)	cpemedB715
MELO3C018624.2	Silver-seed gourd	carmedB0380
MELO3C018624.2	Watermelon (97103) v2	medwmbB209