Cucsa.218100 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.218100
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	DNA repair protein XRCC4
Location	scaffold01658 : 278072 .. 282127 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGCGCGAAGTCAAAACAGCTCCATGGATGCAATCAGGCACACATGCCTGAAGCTTGAAGTTCCAACCAACGCCCAGCCGAACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCTCCGCTTCGATCTCTCCATCACCGACGGCTTCCACGCTTGGACGTGCCATGGTTCCGTTTCTGAAACTTCCACTCAATTTAACTTTGTTTAGTTTCTCTTCTATTCCGCTCTTCTTTCGACTTTGTTCTCGTATTTTCTTTTTGTTATCACCTCGCTTTGCCTGCGACAGCGACGGAGGACGAGGTTCGGTTGCGCGCTGCACAATGGGACCAAGAACCCTCGGACTATGTGGCATTGGCAGAGCGCTATTCAGGGTTTCAACAGCCTGGTTCGATCTATGACTTTGCCGATGCTGGAAATGGGTACAAGAGGGTTTGTGCTTACTCCATTTCGTATTCTTATTTGGTTTTTTTTTGCTCCCTTAGTCGATACTGATAAGGCAATAGAATTTTTTTTTGGGCATTGTTCGTTGTATAGGTACTAGGAAACAGACGATCGGCTCACATTTTGATTTTTAATTCGCCTCTTTGAATGCCTTTATTGTTAAAGAGTAAATTGAATGGAAATCTGGATTCTGGCTGAATAGTTTTAGCTTCCAGGTCTACTAGTGAGTTAATAGCAATGTGGTAATGGAGTATTGAAAAAACCAATATTTAGAAAAAATGTAGTTTCAAAACAACCTTCATAAGCTTATATGCTGCGAGGCCTAAGAAAAGGGAAGAACTTTCGTTTATGAAGCATAAAATTGGAGAATAAAGACATTTTCGAGAGATTCTTAAAAGAGTTTGATGTTCTCTTCTTATTTCTTTAAGATGGGAAACTAACAAGTGAGTACCTTTAAGATGAAGTGAAATGACATGTGTGCTATGTGCTGAGGCACTTGCACCAAAAGGATCAACTAAACATATACAAGAATAAAGTACACTATTGGTTGCTTAGTTGGTTTGGTGTCTATTTCGGGGTTTCTAAAGGACACTTTAGACCCTTATGTTTAGGAAATGGATTGACATGGCCCGTGAACATCTTTGACCATTAATAACTAATGTTAAGATAATGTGGCGGTTAAATTATAAACAACATTTTCTAATATGGGGAGATATTTTAATTTAAATATATATTTTTATGACTAAAATTACTCTCTTTCCACGTTATTTTCTCCTATGGTGAATCTTTCAGTTGCTCGCCAATGCCTTTCTTATGCATGATTAAAGTGTTTATTGTGAAATCTCATGGACCAAATAGATACTAACTTCATATTTTAGGATCCAAAAGTGTAGTTTGTCTAGTCTGCTATTGTATCAGGTTAAGCTTGGTTGAAAATTTTAAATCTACTATAAATATAGGAATTCAATTATAATCATCAATCTATTTGGGTGAGTTGTTGGTCTCGAAATCTCATATACCAAATAGACAACACTTTGTAGTTAAGGGGTGAAAAGTGTAGTTTGTCAATACTCTATGTCACCAGGTTGAGCTTGGTTAAAACTTTTGAGTCTAGTTTAAATTTAAGAATTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATGGTCTATCAGTGATATACCAATATTTACAATATGATCTATCGGTGATAGACTTGTATCATTGATAGAATTTGACAAATTTTTTAAAATGTTGCTATATACTTAATTATTTTGAATCTAATTGCTAAATTTGCAACTATCCCTTGATTTTAATCAACAGTCTCTTTGGGTGAACTTGGTAGTTTTGATACAAGAATATTGTGAATTTGGAAGAGGGATTCAGTTATCTTAATATTAAAGCTTGGGTTTTCATTTTAACTTTGGAGCATATTGATTGGCACTTTGTACTGGTTCTTATGCAGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACCACTACAGCAGGAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGTAATACTATGCCTCCTTGTTGTGTTTACAATGTTTTAGATTTTCTCAAGGTTACTTCTATTCAGCTATTAGCCATACTTCTCATTAATTTTCTGAGCATATTGTTCAATGATTAATAGTTGCTTATTATCGACTTACATGAATGGATTAACAAGATTGACAGTTTCCCTATCCAAGAAAAGGAAAATTACTGATGCTCTCCTATTTGATGACCATTGTCCATTGGATTGGAGTTTTTGTTTCAGCATTGTTTTTCTACATTGAAGGACGCTAAAGTTGAATAGCTCGAGCACATGACTTGTAAAAAAATGATCACAGCCCTCTGTTTGCTTCTATTATGTGATTGCTGTCTGAACATGTGGATAGTTTTTTTTATCTTTTCCAAGCTCTGATATGGTCTCAGAAACATTAGTTACCATGTAAATTACCAAAGTACATTCATTTATTAGAAAGAGTATGATTTGAAAGTCTATGAGACTCCAAGTCATTCTTTATTTGAAGTGTTACTTTTGTCATTCTGATTTCCTCTCTGTCACACTATGGCCTTTGATTTTTTTCTTAAAGATGTTCAGTTGTCAACCTTTTCTTATAACTTATGCCTGCTTTATTTTTTGTATGAATAGGAAGAGGTTGTGAGAAAAAATCAATCAGTTGAGAGGCTGAAGGCGGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAGGTGGAGTTTGAAACTGCAATATATGCAAAGGTACGGAAAATTTCAGAACTTATGATTTGAACTTCACTCCATCTATTTTCATCTTTGTGATCTTAGTCAGTATGATACCATTCTGAATTAACTCTTCTTCAGAAATCATGCTACATTTTAGCTTCAAAAGTGCAACATGATGCAATAAGTACATTTTCATTTTATCAACGCTTTCGAAAATTTTGTTTCTCGTGTTTGAAAGTGTAACATGATGTCTTTGTGGTAAGAAAAATTATTGTTCACATAATTGTGTTCTCTTTGTAACATAGTTATATTAATCCTAAACCCTAAACCTGCCTTGAATTGACCGGTAGCTACTTCTTTGCAAATGTTTGAATCACTGATGCGACCTGGAGTCTTTACACAACGCACCACTGGTTTCTTACTTGAAATCTTTAAATGTCTTTTTCATTGCTTCCAGTTTCTGAATGTCTTGAACGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCAAGACAAACCATTACTGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGAATCTTTCGACGATGAAAGCGATGCAGAAAAGAACTGACAAAGTGGTATAACTTCCGGATCAAGGAATGTTACATGAAATAAGTTGGATTTGTTATATGTGATAGTATGTTAAATTTGGAGATTGAGGATTTGAATCTTGTACTAATGAGCTATGTTTATAGAAACAGCAACA

mRNA sequence

AGGCGCGAAGTCAAAACAGCTCCATGGATGCAATCAGGCACACATGCCTGAAGCTTGAAGTTCCAACCAACGCCCAGCCGAACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCTCCGCTTCGATCTCTCCATCACCGACGGCTTCCACGCTTGGACGTGCCATGCGACGGAGGACGAGGTTCGGTTGCGCGCTGCACAATGGGACCAAGAACCCTCGGACTATGTGGCATTGGCAGAGCGCTATTCAGGGTTTCAACAGCCTGGTTCGATCTATGACTTTGCCGATGCTGGAAATGGGTACAAGAGGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACCACTACAGCAGGAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAAATCAATCAGTTGAGAGGCTGAAGGCGGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAGGTGGAGTTTGAAACTGCAATATATGCAAAGTTTCTGAATGTCTTGAACGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCAAGACAAACCATTACTGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGAATCTTTCGACGATGAAAGCGATGCAGAAAAGAACTGACAAAGTGGTATAACTTCCGGATCAAGGAATGTTACATGAAATAAGTTGGATTTGTTATATGTGATAGTATGTTAAATTTGGAGATTGAGGATTTGAATCTTGTACTAATGAGCTATGTTTATAGAAACAGCAACA

Coding sequence (CDS)

ATGGATGCAATCAGGCACACATGCCTGAAGCTTGAAGTTCCAACCAACGCCCAGCCGAACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCTCCGCTTCGATCTCTCCATCACCGACGGCTTCCACGCTTGGACGTGCCATGCGACGGAGGACGAGGTTCGGTTGCGCGCTGCACAATGGGACCAAGAACCCTCGGACTATGTGGCATTGGCAGAGCGCTATTCAGGGTTTCAACAGCCTGGTTCGATCTATGACTTTGCCGATGCTGGAAATGGGTACAAGAGGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACCACTACAGCAGGAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAAATCAATCAGTTGAGAGGCTGAAGGCGGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAGGTGGAGTTTGAAACTGCAATATATGCAAAGTTTCTGAATGTCTTGAACGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCAAGACAAACCATTACTGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGAATCTTTCGACGATGAAAGCGATGCAGAAAAGAACTGA

Protein sequence

MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRAAQWDQEPSDYVALAERYSGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN*

Homology

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BLAST of Cucsa.218100 vs. Swiss-Prot
Match: XRCC4_ARATH (DNA repair protein XRCC4 OS=Arabidopsis thaliana GN=XRCC4 PE=1 SV=2)

HSP 1 Score: 280.8 bits (717), Expect = 1.4e-74
Identity = 139/230 (60.43%), Postives = 178/230 (77.39%), Query Frame = 1


Query: 5   RHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRAAQWD 64
           +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG  +W C+ATE+EV  RAAQWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QEPSDYVALAERYSGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKT 124
           Q  S+Y+ LAE+Y GFQQP S+Y F+DA  G KRLSWTF+KEG KLEWRWKC+P+ D+K 
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKK 143

Query: 125 TTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFL 184
            T GIL+FLM+ANIRLSEEVV K +S E++++E+E+CLAQ EK+CDEK EFE+A YAKFL
Sbjct: 144 ITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFL 203

Query: 185 NVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDD-ESDAEKN 234
           +VLNAKKAKLR  RD+         ++ +EE S+DK ESF+   SD EK+
Sbjct: 204 SVLNAKKAKLRALRDKED-----SVRVVEEEESTDKAESFESGRSDDEKS 242

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BLAST of Cucsa.218100 vs. Swiss-Prot
Match: XRCC4_HUMAN (DNA repair protein XRCC4 OS=Homo sapiens GN=XRCC4 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 53/212 (25.00%), Postives = 92/212 (43.40%), Query Frame = 1


Query: 36  FDLSITDGFHAWTCHATEDEVRLRAAQWDQEPSDYVA-LAERYSGFQQPGSIYDFADAGN 95
           F +++TDG  AWT   +E E+   A     E   YV  L +       P  +Y F    N
Sbjct: 32  FVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGAGPADVYTF----N 91

Query: 96  GYKRLSWTFDKEGMK-LEWR---WKCQPASDNKTTTAGILNFLMDA---NIRLSEEVVRK 155
             K   + F ++ +K + +R   +  +   +       ++ + +D    N   +E + ++
Sbjct: 92  FSKESCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKE 151

Query: 156 NQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSRQTIT 215
           N   ERL  +      + EK    K   ET +Y +F+ VLN KK K+R   ++L      
Sbjct: 152 N---ERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQE 211

Query: 216 GSK-LKQE-------EYSSDKTESFDDESDAE 232
             K +KQE       E ++D+   +D+ +D E
Sbjct: 212 REKDIKQEGETAICSEMTADRDPVYDESTDEE 236

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BLAST of Cucsa.218100 vs. TrEMBL
Match: A0A0A0K2L2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G064000 PE=4 SV=1)

HSP 1 Score: 476.1 bits (1224), Expect = 2.5e-131
Identity = 232/233 (99.57%), Postives = 232/233 (99.57%), Query Frame = 1


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYSGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERY GFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 233

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BLAST of Cucsa.218100 vs. TrEMBL
Match: D7T7A5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g04910 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 4.3e-83
Identity = 152/227 (66.96%), Postives = 186/227 (81.94%), Query Frame = 1


Query: 5   RHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRAAQWD 64
           RH+CLKL++P  ++P     IF+K TW    F LSITDG HAW C+A+EDEVR RAAQWD
Sbjct: 6   RHSCLKLQIPNQSEP-----IFIKATWFPSHFHLSITDGLHAWLCNASEDEVRERAAQWD 65

Query: 65  QEPSDYVALAERYSGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKT 124
           Q  SDY+ALAER+ GFQQPGS+Y F+DAG+G++RLSWTF+KEG KLEWRWKC  + D+++
Sbjct: 66  QPVSDYIALAERFLGFQQPGSVYGFSDAGDGHRRLSWTFEKEGTKLEWRWKCGLSPDSRS 125

Query: 125 TTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFL 184
           TTAG+L+FLM+ANIRLSEEVV K QS ERLK E+EKCLAQSEK  +EK EFE+AIYAKFL
Sbjct: 126 TTAGVLDFLMNANIRLSEEVVIKTQSFERLKVEAEKCLAQSEKFNNEKAEFESAIYAKFL 185

Query: 185 NVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAE 232
            VLN+KKAKLRE RDQ+S++  TG   ++E+ S+DKT SFDDESD E
Sbjct: 186 GVLNSKKAKLRELRDQISKEETTGKLPQEEDESTDKTLSFDDESDNE 227

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BLAST of Cucsa.218100 vs. TrEMBL
Match: A0A059B477_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03153 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.1e-81
Identity = 151/233 (64.81%), Postives = 183/233 (78.54%), Query Frame = 1


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60
           M+  RH+CLKL +P   +P +   IFVK TW   RFDLSITDG  AW C A+E+EV  RA
Sbjct: 1   METPRHSCLKLVLPNPNEPKKTEPIFVKATWFDTRFDLSITDGLDAWVCQASEEEVIERA 60

Query: 61  AQWDQEPSDYVALAERYSGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQ  S+Y+ LAERY GFQQPGS+Y F DAG+G +RLSWTF+KEG KLEWRWKC+P+ 
Sbjct: 61  AQWDQPVSEYIELAERYLGFQQPGSVYKFTDAGDGNRRLSWTFEKEGTKLEWRWKCRPSP 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           D K+ T+GIL+FLMDANIRLSEEVV K +S +RLK E+EKCLAQSEK  +EK+EFE+AIY
Sbjct: 121 DRKSATSGILDFLMDANIRLSEEVVSKTKSFDRLKVEAEKCLAQSEKFNNEKMEFESAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDE--SDAE 232
           AKFL VLN KKAKLRE RDQL++Q   G   +++E S++KTE+FDDE   DAE
Sbjct: 181 AKFLGVLNTKKAKLRELRDQLAKQDAAGKFAQEDEESAEKTETFDDEMSDDAE 233

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BLAST of Cucsa.218100 vs. TrEMBL
Match: W9QE11_9ROSA (DNA repair protein XRCC4 OS=Morus notabilis GN=L484_016364 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 3.1e-81
Identity = 155/228 (67.98%), Postives = 177/228 (77.63%), Query Frame = 1


Query: 5   RHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRAAQWD 64
           RHTCLKLE      P +   IFV  TW    F+LS+TDG HAW CHA+E+EVR RAAQWD
Sbjct: 6   RHTCLKLE------PKDSDPIFVNATWFPSHFNLSVTDGHHAWICHASEEEVRDRAAQWD 65

Query: 65  QEPSDYVALAERYSGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKT 124
           Q   +YVALAERY GFQQP S+Y FADAG+G+KRLSWTF+KEG KL+WRWKCQPA D+K 
Sbjct: 66  QPVPEYVALAERYLGFQQPDSVYAFADAGDGHKRLSWTFEKEGTKLQWRWKCQPAPDSKK 125

Query: 125 TTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFL 184
           TTA  L+FLMDANIRLSEEVV K+QS ERLK E+EKCL QSEKI +EK+EFE+ +YAKFL
Sbjct: 126 TTAETLDFLMDANIRLSEEVVIKSQSFERLKVEAEKCLEQSEKISNEKMEFESTLYAKFL 185

Query: 185 NVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEK 233
            VLN+KKAKLRE R QL +      KL QEE S+DKTESFDD SD  K
Sbjct: 186 GVLNSKKAKLRELRAQLEKNDPAAGKLPQEEGSTDKTESFDDGSDDGK 227

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BLAST of Cucsa.218100 vs. TrEMBL
Match: V4RZR0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005690mg PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 5.2e-81
Identity = 153/233 (65.67%), Postives = 185/233 (79.40%), Query Frame = 1


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60
           M+A  HTCLKLE+P    P     IFVKGTW    FDLSITDG +AW C+A+E++V+ RA
Sbjct: 1   MEATSHTCLKLEIPDATDP-----IFVKGTWFQTHFDLSITDGLNAWLCNASEEQVKDRA 60

Query: 61  AQWDQEPSDYVALAERYSGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           A WDQ  ++YV LAERY GFQQPGS+Y F DA +G KRLSWTF+KEG KLEWRWKC  A 
Sbjct: 61  ALWDQPVTEYVKLAERYLGFQQPGSVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGSAP 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           ++K  TAGIL+FLMDANIRLS+EVV K QS ERLK E+EKCLAQSE+  +EK+EFE+AIY
Sbjct: 121 NSKKVTAGILDFLMDANIRLSDEVVTKTQSFERLKVEAEKCLAQSERFKNEKLEFESAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFL VLN+KK+KLRE RD+LS+Q + G  L+QEE S+DKTESFD+ SD +K+
Sbjct: 181 AKFLGVLNSKKSKLRELRDKLSKQAVMGD-LQQEEQSTDKTESFDEGSDDDKS 227

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BLAST of Cucsa.218100 vs. TAIR10
Match: AT3G23100.1 (AT3G23100.1 homolog of human DNA ligase iv-binding protein XRCC4)

HSP 1 Score: 280.8 bits (717), Expect = 7.7e-76
Identity = 139/230 (60.43%), Postives = 178/230 (77.39%), Query Frame = 1


Query: 5   RHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRAAQWD 64
           +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG  +W C+ATE+EV  RAAQWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QEPSDYVALAERYSGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKT 124
           Q  S+Y+ LAE+Y GFQQP S+Y F+DA  G KRLSWTF+KEG KLEWRWKC+P+ D+K 
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKK 143

Query: 125 TTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFL 184
            T GIL+FLM+ANIRLSEEVV K +S E++++E+E+CLAQ EK+CDEK EFE+A YAKFL
Sbjct: 144 ITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFL 203

Query: 185 NVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDD-ESDAEKN 234
           +VLNAKKAKLR  RD+         ++ +EE S+DK ESF+   SD EK+
Sbjct: 204 SVLNAKKAKLRALRDKED-----SVRVVEEEESTDKAESFESGRSDDEKS 242

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BLAST of Cucsa.218100 vs. TAIR10
Match: AT1G61410.1 (AT1G61410.1 DNA double-strand break repair and VJ recombination XRCC4)

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-23
Identity = 59/104 (56.73%), Postives = 73/104 (70.19%), Query Frame = 1


Query: 134 MDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAK 193
           M+ANIRLSEEVV K +S E++K+E+E+CLAQ EK+CDEK EFE A YAKFL+VLNAKKAK
Sbjct: 1   MEANIRLSEEVVNKTRSFEKMKSEAERCLAQGEKLCDEKTEFENATYAKFLSVLNAKKAK 60

Query: 194 LREYRDQLSRQTITGSKLKQEEYSSDKTESF-----DDESDAEK 233
           LR  RD+         +  +EE S+ K ESF     DDE   E+
Sbjct: 61  LRAVRDKED-----SVRAVEEEESTYKAESFESGRSDDEQSGEE 99

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BLAST of Cucsa.218100 vs. NCBI nr
Match: gi|449438209|ref|XP_004136882.1| (PREDICTED: DNA repair protein XRCC4 [Cucumis sativus])

HSP 1 Score: 476.1 bits (1224), Expect = 3.5e-131
Identity = 232/233 (99.57%), Postives = 232/233 (99.57%), Query Frame = 1


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYSGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERY GFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 233

[Close]

BLAST of Cucsa.218100 vs. NCBI nr
Match: gi|659110338|ref|XP_008455175.1| (PREDICTED: DNA repair protein XRCC4 [Cucumis melo])

HSP 1 Score: 458.0 bits (1177), Expect = 1.0e-125
Identity = 224/233 (96.14%), Postives = 226/233 (97.00%), Query Frame = 1


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ERSSIFVKGTWNH RFDLSITDG HAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYSGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERY GFQQPGSIY FADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTA ILNFLMDANIRLSEEVVRK QSVERLKAESEKCLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLNAKKAKLREYRDQLS+QT TGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233

[Close]

BLAST of Cucsa.218100 vs. NCBI nr
Match: gi|1009140760|ref|XP_015887826.1| (PREDICTED: DNA repair protein XRCC4 [Ziziphus jujuba])

HSP 1 Score: 323.9 bits (829), Expect = 2.2e-85
Identity = 161/233 (69.10%), Postives = 189/233 (81.12%), Query Frame = 1


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60
           M+  RHTCLKL+    A+P     IFVKGTW H  FDLSITDG HAW C A+E++V+ RA
Sbjct: 1   MEDTRHTCLKLQPKGAAEP-----IFVKGTWFHSHFDLSITDGHHAWICQASEEQVKDRA 60

Query: 61  AQWDQEPSDYVALAERYSGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQ   +YVALAERY GFQQPGS+Y FADAG+G+KRLSWTF+KEG KLEWRWKCQP+ 
Sbjct: 61  VQWDQPVPEYVALAERYLGFQQPGSVYGFADAGDGHKRLSWTFEKEGTKLEWRWKCQPSP 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           ++K TTA I++FLMDANIRLSEEVVRK QS ERLK ESEKCLAQSEK+ +EK+EFE+A+Y
Sbjct: 121 NSKKTTADIMDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKLTNEKMEFESAVY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFL VLN+KKAKLRE RDQL ++  TG KL +EE S+DKTESFD  SD E +
Sbjct: 181 AKFLAVLNSKKAKLRELRDQLQKKNATG-KLPKEEESTDKTESFDGGSDDENS 227

[Close]

BLAST of Cucsa.218100 vs. NCBI nr
Match: gi|743824881|ref|XP_010932893.1| (PREDICTED: DNA repair protein XRCC4-like [Elaeis guineensis])

HSP 1 Score: 317.8 bits (813), Expect = 1.6e-83
Identity = 151/229 (65.94%), Postives = 186/229 (81.22%), Query Frame = 1


Query: 3   AIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRAAQ 62
           ++RHTCLKL++P    P  + SIFVKGTW    F L+ITDG +AWTCHA+E+EVR RA Q
Sbjct: 4   SVRHTCLKLDLPVE-DPKAKDSIFVKGTWFPSHFHLAITDGLNAWTCHASEEEVRQRAEQ 63

Query: 63  WDQEPSDYVALAERYSGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDN 122
           WDQ P+DYVALAERY GFQQPGS Y F DAGNG KRLSWTF+K+G K+EWRWKCQP+S+N
Sbjct: 64  WDQPPADYVALAERYLGFQQPGSRYGFDDAGNGQKRLSWTFEKQGTKMEWRWKCQPSSNN 123

Query: 123 KTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIYAK 182
           + TT+ IL+FLMDANI LSEEVVRK Q+ E+LKAE+E+CL QSEK  +EK EFE+A+Y K
Sbjct: 124 RQTTSEILDFLMDANIHLSEEVVRKTQTAEKLKAEAERCLLQSEKFNNEKAEFESAVYTK 183

Query: 183 FLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAE 232
           F+ VLN+KKAKLRE RD++S+   TG   K+E+ S+DKTE+FD+ SD E
Sbjct: 184 FVAVLNSKKAKLRELRDRISKLEATGKAPKEEDDSTDKTETFDEGSDNE 231

[Close]

BLAST of Cucsa.218100 vs. NCBI nr
Match: gi|297737175|emb|CBI26376.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 315.8 bits (808), Expect = 6.1e-83
Identity = 152/227 (66.96%), Postives = 186/227 (81.94%), Query Frame = 1


Query: 5   RHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRAAQWD 64
           RH+CLKL++P  ++P     IF+K TW    F LSITDG HAW C+A+EDEVR RAAQWD
Sbjct: 6   RHSCLKLQIPNQSEP-----IFIKATWFPSHFHLSITDGLHAWLCNASEDEVRERAAQWD 65

Query: 65  QEPSDYVALAERYSGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKT 124
           Q  SDY+ALAER+ GFQQPGS+Y F+DAG+G++RLSWTF+KEG KLEWRWKC  + D+++
Sbjct: 66  QPVSDYIALAERFLGFQQPGSVYGFSDAGDGHRRLSWTFEKEGTKLEWRWKCGLSPDSRS 125

Query: 125 TTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFL 184
           TTAG+L+FLM+ANIRLSEEVV K QS ERLK E+EKCLAQSEK  +EK EFE+AIYAKFL
Sbjct: 126 TTAGVLDFLMNANIRLSEEVVIKTQSFERLKVEAEKCLAQSEKFNNEKAEFESAIYAKFL 185

Query: 185 NVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAE 232
            VLN+KKAKLRE RDQ+S++  TG   ++E+ S+DKT SFDDESD E
Sbjct: 186 GVLNSKKAKLRELRDQISKEETTGKLPQEEDESTDKTLSFDDESDNE 227

The following BLAST results are available for this feature:

BLAST of Cucsa.218100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
XRCC4_ARATH	1.4e-74	60.43	DNA repair protein XRCC4 OS=Arabidopsis thaliana GN=XRCC4 PE=1 SV=2	[more]
XRCC4_HUMAN	1.6e-06	25.00	DNA repair protein XRCC4 OS=Homo sapiens GN=XRCC4 PE=1 SV=2	[more]

BLAST of Cucsa.218100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2L2_CUCSA	2.5e-131	99.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G064000 PE=4 SV=1	[more]
D7T7A5_VITVI	4.3e-83	66.96	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g04910 PE=4 SV=...	[more]
A0A059B477_EUCGR	1.1e-81	64.81	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03153 PE=4 SV=1	[more]
W9QE11_9ROSA	3.1e-81	67.98	DNA repair protein XRCC4 OS=Morus notabilis GN=L484_016364 PE=4 SV=1	[more]
V4RZR0_9ROSI	5.2e-81	65.67	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005690mg PE=4 SV=1	[more]

BLAST of Cucsa.218100 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23100.1	7.7e-76	60.43	homolog of human DNA ligase iv-binding protein XRCC4	[more]
AT1G61410.1	1.2e-23	56.73	DNA double-strand break repair and VJ recombination XRCC4	[more]

BLAST of Cucsa.218100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438209\|ref\|XP_004136882.1\|	3.5e-131	99.57	PREDICTED: DNA repair protein XRCC4 [Cucumis sativus]	[more]
gi\|659110338\|ref\|XP_008455175.1\|	1.0e-125	96.14	PREDICTED: DNA repair protein XRCC4 [Cucumis melo]	[more]
gi\|1009140760\|ref\|XP_015887826.1\|	2.2e-85	69.10	PREDICTED: DNA repair protein XRCC4 [Ziziphus jujuba]	[more]
gi\|743824881\|ref\|XP_010932893.1\|	1.6e-83	65.94	PREDICTED: DNA repair protein XRCC4-like [Elaeis guineensis]	[more]
gi\|297737175\|emb\|CBI26376.3\|	6.1e-83	66.96	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009089	DNA double-strand break repair and VJ recombination XRCC4, N-terminal
IPR010585	DNA_repair_prot_XRCC4
IPR014751	DNA repair protein XRCC4, C-terminal

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006302	double-strand break repair
GO:0006310	DNA recombination

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006302	double-strand break repair
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.218100.1	Cucsa.218100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009089	DNA double-strand break repair and VJ recombination XRCC4, N-terminal	GENE3D	G3DSA:2.170.210.10		coord: 24..75 score: 6.
IPR010585	DNA repair protein XRCC4	PFAM	PF06632	XRCC4	coord: 36..227 score: 8.9
IPR014751	DNA repair protein XRCC4, C-terminal	GENE3D	G3DSA:1.20.5.370		coord: 125..214 score: 1.3
None	No IPR available	unknown	Coil	Coil	coord: 184..204 score: -coord: 137..157 scor
None	No IPR available	PANTHER	PTHR28559	FAMILY NOT NAMED	coord: 1..231 score: 1.3
None	No IPR available	PANTHER	PTHR28559:SF1	DNA REPAIR PROTEIN XRCC4	coord: 1..231 score: 1.3
None	No IPR available	unknown	SSF58022	XRCC4, C-terminal oligomerization domain	coord: 122..206 score: 3.75

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.218100	Cla012874	Watermelon (97103) v1	cgywmB416
Cucsa.218100	Csa7G064000	Cucumber (Chinese Long) v2	cgycuB322
Cucsa.218100	MELO3C018624	Melon (DHL92) v3.5.1	cgymeB379
Cucsa.218100	ClCG09G015590	Watermelon (Charleston Gray)	cgywcgB391
Cucsa.218100	CSPI07G05720	Wild cucumber (PI 183967)	cgycpiB336
Cucsa.218100	CmaCh19G004650	Cucurbita maxima (Rimu)	cgycmaB0624
Cucsa.218100	CmoCh19G004810	Cucurbita moschata (Rifu)	cgycmoB0627
Cucsa.218100	Lsi03G007440	Bottle gourd (USVL1VR-Ls)	cgylsiB367
Cucsa.218100	Cp4.1LG15g03670	Cucurbita pepo (Zucchini)	cgycpeB0594
Cucsa.218100	MELO3C018624.2	Melon (DHL92) v3.6.1	cgymedB377
Cucsa.218100	CsaV3_7G006710	Cucumber (Chinese Long) v3	cgycucB342
Cucsa.218100	Bhi05G000729	Wax gourd	cgywgoB445
Cucsa.218100	Carg22824	Silver-seed gourd	carcgyB0339

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.218100	Cucurbita pepo (Zucchini)	cgycpeB0602
Cucsa.218100	Silver-seed gourd	carcgyB0430
Cucsa.218100	Watermelon (97103) v2	cgywmbB399
Cucsa.218100	Watermelon (97103) v2	cgywmbB401
Cucsa.218100	Cucurbita maxima (Rimu)	cgycmaB0620
Cucsa.218100	Cucurbita moschata (Rifu)	cgycmoB0624