CsaV3_7G006710 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G006710
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	DNA repair protein XRCC4
Location	chr7 : 4170628 .. 4174079 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTTCCAACCAACGCCCAGCCGAACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCTCCGCTTCGATCTCTCCATCACCGACGGCTTCCACGCTTGGACGTGCCATGGTTCCGTTCCTGAAACTTCCACTCAATTTAACTTTGTTTAGTTTCTCTTCTATTCCGCTCTTCTTTCGACTTTGTTCTCGTATTTTCTTTTTGTTATCACCTCGTTTTGCCTGCGACAGCGACGGAGGACGAGGTTCGGTTGCGCGCTGCACAATGGGACCAAGAACCCTCGGACTATGTGGCATTGGCAGAGCGCTATTTAGGGTTTCAACAGCCTGGTTCGATCTATGACTTTGCCGATGCTGGAAATGGGTACAAGAGGGTTTGTGCTTACTCCATTTCGTGTTCTTATTTGGTTTTTTTTTGCTCCCTTAGTCGATACTGATAAGGCAATAGAATCTTTTTTTGGGCATTGTTCGTTGTATAGGTACTAGGAAACAGACGATCGGCTCACATTTTGATTTTTAATTCGCCTCTTTGAATGCCTTTATTGTTAAAGAGTAAATTGAATGGAAATCTGGATTCTGGCTGAATAGTTTTAGCTTCCAGGTCTACTAGTGAGTTAATAGCAATGTGGTAATGGAGTATTGAAAAAACCAATATTTAGAAAAAATGTAGTTTCAAAACAACCTTCATAAGTTTATATGCGAGGCCTAAGAAAAGGGAAGAACTTTCGTTTATGAAGCATAAAATTGGAGAATAAAGACATTTTCGAGAGATTCTTAAAAGAGTTTGATGTTCTCTTCTTATTTCTTTAAGATGGGAAACTAACAAGTGAGTACCTTTAAGATGAAGTGAAATGACATGTGTGCTATGTGCTGAGGCACTTGCACCAAAAGGATCAACTAAACATATACAAGAATAAAGTACACTATTGGTTGCTCAGTTGGTTTGGTGTCTATTTGGGGGTTTCTAAAGGACACTTTAGACCCTTATGTTTAGGAAATGGATTGACATGGCCCGTGAACATCTTTGACCATTAATAACTAATGTTAAGATAATGTGGCGGTTAAATTATAAACAACATTTTCTAATATGGGGAGATATTTTAATTTAAATATATATTTTTATGACTAAAATTACTCTCTTTCCACGTTATTTTCTCCTATGGTGAATCTTTCAGTTGCTCGCCAATGCCTTTCTTATGCATGATTAAAGTGTTTATTGTGAAATCTCATGGACCAAATAGATACTAACTTCATATTTTAGGATCCAAAAGTGTAGTTTGTCTAGTCTGCTATTGTATCAGGTTAAGCTTGGTTGAAAATTTTAAATCTACTATAAATATAGGAATTCAATTATAATCATCAATCTATTTGGGTGAGTTGTTGGTCTCGAAATCTCATATACCAAATAGACAACACTTTGTAGTTAAGGGGTGAAAAGTGTAGTTTGTCAATACTCTATGTCACCAGGTTGAGCTTGGTTAAAACTTTTGAGTCTAGTTTAAATTTAAGAATTTGATTTTAGGATAATTGTAATGGATGACAATTTAAGGAATAATAATTAAGGATATAGCAGCATTTAAAAAAAATTGCAATTATAGCAAAACTATCGCTGATAGACTTGTATCACTGATAGACTCATATGGTCTATCAGTGATATACCAATATTTACAATATGATCTATCGGTGATAGACTTGTATCATTGATAGAATTTGACAAATTATGCTATATTTGCAAATTTTTTAAAATGTTGCTATATACTTAATTATTTTGAATCTAATTGCTAAATTTGCAACTATCCCTTGATTTTAATCAACAGTCTCTTTGGGTGAACTTGGTAGTTTTGATACAAGAATATTGTGAATTTGGAAGAGGGATTCAGTTATCTTAATATTAAAGCTTGGGTTTTCATTTTAACTTTGGAGCATATTGATTGGCACTTTGTACTGGTTCTTATGCAGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACCACTACAGCAGGAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGTAATACTATGCCTCCTTGTTGTGTTTACAATGTTTTAGATTTTCTCAAGGTTACTTCTATTCAGCTATTAGCCATACTTCTCATTAATTTTCTGAGCATATTGTTCAATGATTAATAGTTGCTTATTATCGACTTACATGAATGGATTAACAAGATTGACAGTTTCCCTATCCAAGAAAAGGAAAATTACTGATGCTCTCCTATTTGATGACCATTGTCCATTGGATTGGAGTTTTTGTTTCAGCATTGTTTTTCTACATTGAAGGATGCTAAAGTTGAATAGCTCGAGCACATGACTTGTAAAAAAATGATCACAGCCCTCTGTTTGCTTCTATTATGTGATTGCTGTCTGAACATGTGGATAGTTTTTTTTATCTTTTCCAAGCTCTGATATGGTCTCAGAAACATTAGTTACCATGTAAATTACCAAAGTACATTCATTTATTAGAAAGAGTATGATTTGAAAGTCTATGAGACTCCAAGTCATTCTTTATTTGAAGTGTTACTTTTGTCATTCTGATTTCCTCTCTGTCACACTATGGCCTTTGATTTTTTTCTTAAAGATGTTCAGTTGTCAACCTTTTCTTATAACTTATGCCTGCTTTATTTTTTGTATGAATAGGAAGAGGTTGTGAGAAAAAATCAATCAGTTGAGAGGCTGAAGGCGGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAGGTGGAGTTTGAAACTGCAATATATGCAAAGGTACGGAAAATTTGAGAACTTATGATTTGAACTTCACTCCATCTATTTTCATCTTTGTGATCTTAGTCAGTATGATACCATTCTGAATTAACTCTTCTTCAGAAATCATGCTACATTTAGCTTCAAAAGTGCAACATGATGCAATAAGTACATTTTCATTTTATCAACGCTTTCGAAAATTTTGTTTCTCGTGTTTGAAAGTGTAACATGATGTCTTTGTGGTAAGAAAAATTATTGTTCACATAATTGTGTTCTCTTTGTAACATAGTTATATTAATCCTAAACCCTAAACCTGCCTTGAATTGACCGGTAGCTACTTCTTTGCAAATGTTGTTTGAATCACTGATGCGACCTGGAGTCTTTACACAACGCACCACTTGTTTCTTACTTGAAATCTTTAAATGTCTTTTTCATTGCTTCCAGTTTCTGAATGTCTTGAACGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCAAGACAAACCATTACTGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGAATCTTTCGACGATGAAAGCGATGCAGAAAAGAACTGA

mRNA sequence

ATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTTCCAACCAACGCCCAGCCGAACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCTCCGCTTCGATCTCTCCATCACCGACGGCTTCCACGCTTGGACGTGCCATGCGACGGAGGACGAGGTTCGGTTGCGCGCTGCACAATGGGACCAAGAACCCTCGGACTATGTGGCATTGGCAGAGCGCTATTTAGGGTTTCAACAGCCTGGTTCGATCTATGACTTTGCCGATGCTGGAAATGGGTACAAGAGGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACCACTACAGCAGGAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAAATCAATCAGTTGAGAGGCTGAAGGCGGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAGGTGGAGTTTGAAACTGCAATATATGCAAAGTTTCTGAATGTCTTGAACGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCAAGACAAACCATTACTGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGAATCTTTCGACGATGAAAGCGATGCAGAAAAGAACTGA

Coding sequence (CDS)

ATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTTCCAACCAACGCCCAGCCGAACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCTCCGCTTCGATCTCTCCATCACCGACGGCTTCCACGCTTGGACGTGCCATGCGACGGAGGACGAGGTTCGGTTGCGCGCTGCACAATGGGACCAAGAACCCTCGGACTATGTGGCATTGGCAGAGCGCTATTTAGGGTTTCAACAGCCTGGTTCGATCTATGACTTTGCCGATGCTGGAAATGGGTACAAGAGGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACCACTACAGCAGGAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAAATCAATCAGTTGAGAGGCTGAAGGCGGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAGGTGGAGTTTGAAACTGCAATATATGCAAAGTTTCTGAATGTCTTGAACGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCAAGACAAACCATTACTGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGAATCTTTCGACGATGAAAGCGATGCAGAAAAGAACTGA

Protein sequence

MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN

Homology

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BLAST of CsaV3_7G006710 vs. NCBI nr
Match: XP_004136882.1 (PREDICTED: DNA repair protein XRCC4 [Cucumis sativus] >KGN43738.1 hypothetical protein Csa_7G064000 [Cucumis sativus])

HSP 1 Score: 427.9 bits (1099), Expect = 2.2e-116
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVEFETAIY 180
           DNKTTTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVEFETAIY
Sbjct: 121 DNKTTTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 233

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BLAST of CsaV3_7G006710 vs. NCBI nr
Match: XP_008455175.1 (PREDICTED: DNA repair protein XRCC4 [Cucumis melo])

HSP 1 Score: 412.1 bits (1058), Expect = 1.2e-111
Identity = 224/233 (96.14%), Postives = 226/233 (97.00%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ERSSIFVKGTWNH RFDLSITDG HAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQPGSIY FADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVEFETAIY 180
           DNKTTTA ILNFLMDANIRLSEEVVR  XXXXXXXXXXXXXXXXXXXICDEKVEFETAIY
Sbjct: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLNAKKAKLREYRDQLS+QT TGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233

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BLAST of CsaV3_7G006710 vs. NCBI nr
Match: XP_022971995.1 (DNA repair protein XRCC4 isoform X1 [Cucurbita maxima])

HSP 1 Score: 364.8 bits (935), Expect = 2.2e-97
Identity = 181/233 (77.68%), Postives = 193/233 (82.83%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ R SIFVKGTW   RFDLSITDG +AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQEPSDYV LAERYLGFQQP S+YDFAD GNG KRLSWTF+KEGMKLEWRWKC+ AS
Sbjct: 61  EQWDQEPSDYVGLAERYLGFQQPDSVYDFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVEFETAIY 180
           DNKTTTAGIL+FLMDANIRLSEEVVR                     IC+EKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLN KKAKLREYRDQ  +QT T SKLKQ++  SDKTESFDD+SDAEKN
Sbjct: 181 AKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDAEKN 233

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BLAST of CsaV3_7G006710 vs. NCBI nr
Match: XP_022952201.1 (DNA repair protein XRCC4 [Cucurbita moschata])

HSP 1 Score: 362.5 bits (929), Expect = 1.1e-96
Identity = 180/233 (77.25%), Postives = 193/233 (82.83%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ R SIFVKGTW   RFDLSITDG +AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQEPSDYV+LAERYLGFQQP S+Y FAD GNG KRLSWTF+KEGMKLEWRWKC+ AS
Sbjct: 61  EQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVEFETAIY 180
           DNKTTTAGIL+FLMDANIRLSEEVVR                     IC+EKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLN KKAKLREYRDQ  +QT T SKLKQ++  SDKTESFDD+SDAEKN
Sbjct: 181 AKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDAEKN 233

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BLAST of CsaV3_7G006710 vs. NCBI nr
Match: XP_023553967.1 (DNA repair protein XRCC4 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 358.6 bits (919), Expect = 1.6e-95
Identity = 178/233 (76.39%), Postives = 193/233 (82.83%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60
           MDAIRHTCLKL+VPT+AQP+ R SIFVKGTW   RFDLSITDG +AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLQVPTDAQPDGRVSIFVKGTWYPHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQEPSDYV+LAERYLGFQQP S+Y FAD GNG KRLSWTF+KEGMKLEWRWKC+ AS
Sbjct: 61  EQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVEFETAIY 180
           DNKTTTAGIL+FLMDANIRLSEEVVR                     IC+EKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLN KKAKLREYRDQ  +QT T SKLKQ++  SDKTESFDD+SDAEKN
Sbjct: 181 AKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDAEKN 233

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BLAST of CsaV3_7G006710 vs. TAIR10
Match: AT3G23100.1 (homolog of human DNA ligase iv-binding protein XRCC4)

HSP 1 Score: 240.4 bits (612), Expect = 1.2e-63
Identity = 117/196 (59.69%), Postives = 143/196 (72.96%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRAAQWD 64
           +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG  +W C+ATE+EV  RAAQWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKT 124
           Q  S+Y+ LAE+YLGFQQP S+Y F+DA  G KRLSWTF+KEG KLEWRWKC+P+ D+K 
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKK 143

Query: 125 TTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVEFETAIYAKFL 184
            T GIL+FLM+ANIRLSEEVV                      +CDEK EFE+A YAKFL
Sbjct: 144 ITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFL 203

Query: 185 NVLNAKKAKLREYRDQ 201
           +VLNAKKAKLR  RD+
Sbjct: 204 SVLNAKKAKLRALRDK 213

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BLAST of CsaV3_7G006710 vs. TAIR10
Match: AT1G61410.1 (DNA double-strand break repair and VJ recombination XRCC4)

HSP 1 Score: 65.5 bits (158), Expect = 5.1e-11
Identity = 36/66 (54.55%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 134 MDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVEFETAIYAKFLNVLNAKKAK 193
           M+ANIRLSEEVV                      +CDEK EFE A YAKFL+VLNAKKAK
Sbjct: 1   MEANIRLSEEVVNKTRSFEKMKSEAERCLAQGEKLCDEKTEFENATYAKFLSVLNAKKAK 60

Query: 194 LREYRD 200
           LR  RD
Sbjct: 61  LRAVRD 66

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BLAST of CsaV3_7G006710 vs. Swiss-Prot
Match: sp|Q682V0|XRCC4_ARATH (DNA repair protein XRCC4 OS=Arabidopsis thaliana OX=3702 GN=XRCC4 PE=1 SV=2)

HSP 1 Score: 240.4 bits (612), Expect = 2.1e-62
Identity = 117/196 (59.69%), Postives = 143/196 (72.96%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRAAQWD 64
           +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG  +W C+ATE+EV  RAAQWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKT 124
           Q  S+Y+ LAE+YLGFQQP S+Y F+DA  G KRLSWTF+KEG KLEWRWKC+P+ D+K 
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKK 143

Query: 125 TTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVEFETAIYAKFL 184
            T GIL+FLM+ANIRLSEEVV                      +CDEK EFE+A YAKFL
Sbjct: 144 ITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFL 203

Query: 185 NVLNAKKAKLREYRDQ 201
           +VLNAKKAKLR  RD+
Sbjct: 204 SVLNAKKAKLRALRDK 213

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BLAST of CsaV3_7G006710 vs. TrEMBL
Match: tr|A0A0A0K2L2|A0A0A0K2L2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064000 PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 1.4e-116
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVEFETAIY 180
           DNKTTTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVEFETAIY
Sbjct: 121 DNKTTTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 233

[Close]

BLAST of CsaV3_7G006710 vs. TrEMBL
Match: tr|A0A1S3BZW1|A0A1S3BZW1_CUCME (DNA repair protein XRCC4 OS=Cucumis melo OX=3656 GN=LOC103495407 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 8.1e-112
Identity = 224/233 (96.14%), Postives = 226/233 (97.00%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ERSSIFVKGTWNH RFDLSITDG HAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQPGSIY FADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVEFETAIY 180
           DNKTTTA ILNFLMDANIRLSEEVVR  XXXXXXXXXXXXXXXXXXXICDEKVEFETAIY
Sbjct: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLNAKKAKLREYRDQLS+QT TGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233

[Close]

BLAST of CsaV3_7G006710 vs. TrEMBL
Match: tr|A0A2R6Q3G5|A0A2R6Q3G5_ACTCH (DNA repair protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc22757 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 6.7e-74
Identity = 144/230 (62.61%), Postives = 172/230 (74.78%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRAAQWD 64
           RHTCLKLE+PTN++ +    IFVKGTW   RFDL+ITDG HAW+ +ATEDEVR RA+QWD
Sbjct: 6   RHTCLKLELPTNSESDRTEPIFVKGTWLASRFDLAITDGLHAWSLYATEDEVRERASQWD 65

Query: 65  QEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKT 124
           Q   DY+ LAER+LGFQQPGS+Y FADAGNG +RLSWTF+K+G KLEWRWKC+P+ D+K 
Sbjct: 66  QTVPDYIELAERHLGFQQPGSVYGFADAGNGNRRLSWTFEKKGTKLEWRWKCKPSLDSKK 125

Query: 125 TTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVEFETAIYAKFL 184
           TTAGIL+FLMDANIRLS+EVVR                       +EK +FE AIYAKFL
Sbjct: 126 TTAGILDFLMDANIRLSDEVVRKTQSVERLRGEAEKCLAQSEKFSNEKADFEDAIYAKFL 185

Query: 185 NVLNAKKAKLREYRDQLSRQTITGSKLKQEE-YSSDKTESFDDESDAEKN 234
            VLN+KKAKLRE RD+ S+Q  TG   ++EE  S+DKTESFD ESD  K+
Sbjct: 186 GVLNSKKAKLRELRDRFSKQENTGKMPREEEGESTDKTESFDGESDDGKS 235

[Close]

BLAST of CsaV3_7G006710 vs. TrEMBL
Match: tr|A0A2I4E1Y3|A0A2I4E1Y3_9ROSI (DNA repair protein XRCC4 OS=Juglans regia OX=51240 GN=LOC108985521 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.4e-71
Identity = 148/233 (63.52%), Postives = 174/233 (74.68%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60
           M++ RH+CLKLE P +++P     IFVK TW+  RFDLSITDG HAW CHA+E+EVR RA
Sbjct: 1   MESTRHSCLKLE-PQHSEP-----IFVKCTWSQSRFDLSITDGLHAWICHASEEEVRDRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQ  ++YV LAERYLGFQQPGSIY F DAG+G+KRLSWTFDKEG  LEWRWKCQ + 
Sbjct: 61  AQWDQPVTEYVELAERYLGFQQPGSIYQFTDAGDGHKRLSWTFDKEGTTLEWRWKCQLSP 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVEFETAIY 180
           ++K TTAGIL+FLMDANIRLSEEVVR                     I DEKVEFE+AIY
Sbjct: 121 NSKETTAGILDFLMDANIRLSEEVVRKTQSFERLKVEAEKCLAQSEKINDEKVEFESAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 234
            KFL VLN+KKAKLRE R QLS +   G KL ++E SS+KT+SFD+ SD EK+
Sbjct: 181 EKFLGVLNSKKAKLRELRGQLSNEKAAG-KLPEDE-SSEKTDSFDNGSDDEKS 225

[Close]

BLAST of CsaV3_7G006710 vs. TrEMBL
Match: tr|D7T7A5|D7T7A5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g04910 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.0e-70
Identity = 136/227 (59.91%), Postives = 169/227 (74.45%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRAAQWD 64
           RH+CLKL++P  ++P     IF+K TW    F LSITDG HAW C+A+EDEVR RAAQWD
Sbjct: 6   RHSCLKLQIPNQSEP-----IFIKATWFPSHFHLSITDGLHAWLCNASEDEVRERAAQWD 65

Query: 65  QEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKT 124
           Q  SDY+ALAER+LGFQQPGS+Y F+DAG+G++RLSWTF+KEG KLEWRWKC  + D+++
Sbjct: 66  QPVSDYIALAERFLGFQQPGSVYGFSDAGDGHRRLSWTFEKEGTKLEWRWKCGLSPDSRS 125

Query: 125 TTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVEFETAIYAKFL 184
           TTAG+L+FLM+ANIRLSEEVV                        +EK EFE+AIYAKFL
Sbjct: 126 TTAGVLDFLMNANIRLSEEVVIKTQSFERLKVEAEKCLAQSEKFNNEKAEFESAIYAKFL 185

Query: 185 NVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAE 232
            VLN+KKAKLRE RDQ+S++  TG   ++E+ S+DKT SFDDESD E
Sbjct: 186 GVLNSKKAKLRELRDQISKEETTGKLPQEEDESTDKTLSFDDESDNE 227

The following BLAST results are available for this feature:

BLAST of CsaV3_7G006710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136882.1	2.2e-116	100.00	PREDICTED: DNA repair protein XRCC4 [Cucumis sativus] >KGN43738.1 hypothetical p...	[more]
XP_008455175.1	1.2e-111	96.14	PREDICTED: DNA repair protein XRCC4 [Cucumis melo]	[more]
XP_022971995.1	2.2e-97	77.68	DNA repair protein XRCC4 isoform X1 [Cucurbita maxima]	[more]
XP_022952201.1	1.1e-96	77.25	DNA repair protein XRCC4 [Cucurbita moschata]	[more]
XP_023553967.1	1.6e-95	76.39	DNA repair protein XRCC4 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_7G006710 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23100.1	1.2e-63	59.69	homolog of human DNA ligase iv-binding protein XRCC4	[more]
AT1G61410.1	5.1e-11	54.55	DNA double-strand break repair and VJ recombination XRCC4	[more]

BLAST of CsaV3_7G006710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q682V0\|XRCC4_ARATH	2.1e-62	59.69	DNA repair protein XRCC4 OS=Arabidopsis thaliana OX=3702 GN=XRCC4 PE=1 SV=2	[more]

BLAST of CsaV3_7G006710 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K2L2\|A0A0A0K2L2_CUCSA	1.4e-116	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064000 PE=4 SV=1	[more]
tr\|A0A1S3BZW1\|A0A1S3BZW1_CUCME	8.1e-112	96.14	DNA repair protein XRCC4 OS=Cucumis melo OX=3656 GN=LOC103495407 PE=4 SV=1	[more]
tr\|A0A2R6Q3G5\|A0A2R6Q3G5_ACTCH	6.7e-74	62.61	DNA repair protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc...	[more]
tr\|A0A2I4E1Y3\|A0A2I4E1Y3_9ROSI	2.4e-71	63.52	DNA repair protein XRCC4 OS=Juglans regia OX=51240 GN=LOC108985521 PE=4 SV=1	[more]
tr\|D7T7A5\|D7T7A5_VITVI	2.0e-70	59.91	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g04910 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006302	double-strand break repair
GO:0006310	DNA recombination

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR010585	DNA_repair_prot_XRCC4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006302	double-strand break repair
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0046482	para-aminobenzoic acid metabolic process
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0051213	dioxygenase activity
molecular_function	GO:0018580	nitronate monooxygenase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G006710.1	CsaV3_7G006710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 137..157
None	No IPR available	COILS	Coil	Coil	coord: 184..204
None	No IPR available	GENE3D	G3DSA:1.20.5.370		coord: 123..216 e-value: 1.6E-12 score: 49.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..233
None	No IPR available	PANTHER	PTHR28559	FAMILY NOT NAMED	coord: 1..230
None	No IPR available	SUPERFAMILY	SSF58022	XRCC4, C-terminal oligomerization domain	coord: 122..206
IPR010585	DNA repair protein XRCC4	PFAM	PF06632	XRCC4	coord: 36..227 e-value: 1.0E-13 score: 50.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G006710	CSPI07G05720	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G006710	Cucsa.218100	Cucumber (Gy14) v1	cgycucB342
CsaV3_7G006710	CmaCh19G004650	Cucurbita maxima (Rimu)	cmacucB0639
CsaV3_7G006710	CmoCh19G004810	Cucurbita moschata (Rifu)	cmocucB0623
CsaV3_7G006710	Cp4.1LG15g03670	Cucurbita pepo (Zucchini)	cpecucB0323
CsaV3_7G006710	CsGy7G005430	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G006710	Carg22824	Silver-seed gourd	carcucB0323
CsaV3_7G006710	Cla012874	Watermelon (97103) v1	cucwmB580
CsaV3_7G006710	MELO3C018624	Melon (DHL92) v3.5.1	cucmeB548
CsaV3_7G006710	ClCG09G015590	Watermelon (Charleston Gray)	cucwcgB535
CsaV3_7G006710	Lsi03G007440	Bottle gourd (USVL1VR-Ls)	cuclsiB555
CsaV3_7G006710	MELO3C018624.2	Melon (DHL92) v3.6.1	cucmedB536
CsaV3_7G006710	Bhi05G000729	Wax gourd	cucwgoB686

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G006710	Silver-seed gourd	carcucB0402
CsaV3_7G006710	Cucurbita maxima (Rimu)	cmacucB0171
CsaV3_7G006710	Cucurbita moschata (Rifu)	cmocucB0160
CsaV3_7G006710	Cucurbita pepo (Zucchini)	cpecucB0868
CsaV3_7G006710	Watermelon (97103) v2	cucwmbB581