MELO3C015977.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015977.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr01 : 32209107 .. 32209532 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTGGCGAGATGTTTCAAGCTCTTACCCACCCTTTTCTTAGTGTTCGTTTGGCAATATTGTGCTAAAGTGGGGGCCGCTTCTAGCATCTCTAGCTTTTTCGATGACTTCGATGTCGGTACATTTGGATCAGGGGGTGTTGGGGCTCTATTGACCAAGAAATCTAATCGTGGAATTGCACCGAACTCAAACTTGATAGATCCTAAAGAATTAACTCCAGAAATTACTCGTTCGGTGGAGACAAAAACTGCAAAGAATAAAGATAACAAAGCTTTGTCGTCCAATGTCAAAATTACAGCTAAGAACAGAAAGCTGGTTGGCACTATTGTTTCAAATGATCATATTAAAGCTAATAAGAAGATTGGTGAAAACATTGATCTTTTTGAACATGGAAGAATAATTAGTCCAGAGATCCAAGTTTAA

mRNA sequence

ATGGCTGTGGCGAGATGTTTCAAGCTCTTACCCACCCTTTTCTTAGTGTTCGTTTGGCAATATTGTGCTAAAGTGGGGGCCGCTTCTAGCATCTCTAGCTTTTTCGATGACTTCGATGTCGGTACATTTGGATCAGGGGGTGTTGGGGCTCTATTGACCAAGAAATCTAATCGTGGAATTGCACCGAACTCAAACTTGATAGATCCTAAAGAATTAACTCCAGAAATTACTCGTTCGGTGGAGACAAAAACTGCAAAGAATAAAGATAACAAAGCTTTGTCGTCCAATGTCAAAATTACAGCTAAGAACAGAAAGCTGGTTGGCACTATTGTTTCAAATGATCATATTAAAGCTAATAAGAAGATTGGTGAAAACATTGATCTTTTTGAACATGGAAGAATAATTAGTCCAGAGATCCAAGTTTAA

Coding sequence (CDS)

ATGGCTGTGGCGAGATGTTTCAAGCTCTTACCCACCCTTTTCTTAGTGTTCGTTTGGCAATATTGTGCTAAAGTGGGGGCCGCTTCTAGCATCTCTAGCTTTTTCGATGACTTCGATGTCGGTACATTTGGATCAGGGGGTGTTGGGGCTCTATTGACCAAGAAATCTAATCGTGGAATTGCACCGAACTCAAACTTGATAGATCCTAAAGAATTAACTCCAGAAATTACTCGTTCGGTGGAGACAAAAACTGCAAAGAATAAAGATAACAAAGCTTTGTCGTCCAATGTCAAAATTACAGCTAAGAACAGAAAGCTGGTTGGCACTATTGTTTCAAATGATCATATTAAAGCTAATAAGAAGATTGGTGAAAACATTGATCTTTTTGAACATGGAAGAATAATTAGTCCAGAGATCCAAGTTTAA

Protein sequence

MAVARCFKLLPTLFLVFVWQYCAKVGAASSISSFFDDFDVGTFGSGGVGALLTKKSNRGIAPNSNLIDPKELTPEITRSVETKTAKNKDNKALSSNVKITAKNRKLVGTIVSNDHIKANKKIGENIDLFEHGRIISPEIQV

Homology

[Close]

BLAST of MELO3C015977.2 vs. NCBI nr
Match: KGN44968.1 (hypothetical protein Csa_7G399270 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 1.4e-46
Identity = 105/141 (74.47%), Postives = 115/141 (81.56%), Query Frame = 0


Query: 1   MAVARCFKLLPTLFLVFVWQYCAKVGAASSISSFFDDFDVGTFGSGGVGALLTKKSNRGI 60
           MAVARCFKLLPTLFLVFVWQYCAKVGA    S FFDDFD G+FGS GVG L+ K  NRG+
Sbjct: 1   MAVARCFKLLPTLFLVFVWQYCAKVGA----SGFFDDFDSGSFGSSGVGMLVIK--NRGV 60

Query: 61  APNSNLIDPKELTPEITRSVETKTAKNKDNKALSSNVKITAKNRKLVGTIVSNDHIKANK 120
           APNSN+IDPKEL PE TR +ETKT +NKDNK  SSN+KITA NRK +GT VS D IK N 
Sbjct: 61  APNSNMIDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRK-IGTTVSYDRIKTNM 120

Query: 121 KIGENIDLFEHGRIISPEIQV 142
           KIG NIDLF+HGRII P+IQV
Sbjct: 121 KIGGNIDLFDHGRIIIPKIQV 134

[Close]

BLAST of MELO3C015977.2 vs. TrEMBL
Match: tr|A0A0A0K668|A0A0A0K668_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399270 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 9.4e-47
Identity = 105/141 (74.47%), Postives = 115/141 (81.56%), Query Frame = 0


Query: 1   MAVARCFKLLPTLFLVFVWQYCAKVGAASSISSFFDDFDVGTFGSGGVGALLTKKSNRGI 60
           MAVARCFKLLPTLFLVFVWQYCAKVGA    S FFDDFD G+FGS GVG L+ K  NRG+
Sbjct: 1   MAVARCFKLLPTLFLVFVWQYCAKVGA----SGFFDDFDSGSFGSSGVGMLVIK--NRGV 60

Query: 61  APNSNLIDPKELTPEITRSVETKTAKNKDNKALSSNVKITAKNRKLVGTIVSNDHIKANK 120
           APNSN+IDPKEL PE TR +ETKT +NKDNK  SSN+KITA NRK +GT VS D IK N 
Sbjct: 61  APNSNMIDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRK-IGTTVSYDRIKTNM 120

Query: 121 KIGENIDLFEHGRIISPEIQV 142
           KIG NIDLF+HGRII P+IQV
Sbjct: 121 KIGGNIDLFDHGRIIIPKIQV 134

The following BLAST results are available for this feature:

BLAST of MELO3C015977.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44968.1	1.4e-46	74.47	hypothetical protein Csa_7G399270 [Cucumis sativus]	[more]

BLAST of MELO3C015977.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C015977.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C015977.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K668\|A0A0A0K668_CUCSA	9.4e-47	74.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399270 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015977.2.1	MELO3C015977.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015977.2	CSPI07G17740	Wild cucumber (PI 183967)	cpimedB520
MELO3C015977.2	CsGy7G016160	Cucumber (Gy14) v2	cgybmedB467

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015977.2	Silver-seed gourd	carmedB0112
MELO3C015977.2	Cucumber (Chinese Long) v3	cucmedB538
MELO3C015977.2	Watermelon (97103) v2	medwmbB194
MELO3C015977.2	Watermelon (97103) v2	medwmbB218
MELO3C015977.2	Wax gourd	medwgoB255
MELO3C015977.2	Cucumber (Gy14) v1	cgymedB368
MELO3C015977.2	Cucurbita maxima (Rimu)	cmamedB373
MELO3C015977.2	Cucurbita maxima (Rimu)	cmamedB930
MELO3C015977.2	Cucurbita moschata (Rifu)	cmomedB359
MELO3C015977.2	Cucurbita pepo (Zucchini)	cpemedB145
MELO3C015977.2	Cucurbita pepo (Zucchini)	cpemedB341
MELO3C015977.2	Wild cucumber (PI 183967)	cpimedB525
MELO3C015977.2	Cucumber (Chinese Long) v2	cumedB511
MELO3C015977.2	Bottle gourd (USVL1VR-Ls)	lsimedB201
MELO3C015977.2	Watermelon (Charleston Gray)	medwcgB155
MELO3C015977.2	Watermelon (Charleston Gray)	medwcgB178
MELO3C015977.2	Watermelon (97103) v1	medwmB181
MELO3C015977.2	Watermelon (97103) v1	medwmB206