CsGy7G016160 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G016160
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr7 : 19849581 .. 19849985 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCGGCAAGATGTTTCAAGCTCTTACCCACCCTTCTCTTAGTGTTTGTTTGGCAATATTGTGCTAAAGTTGGGGCCAGTGGCTTTTTCGACGACTTTGACAGCGGTTCATTTGGATCAAGTGGTGTTGGGATGCTAGTGATCAAGAATCGTGGCGTTGCACCTAACTCAAACATGATAGATCCTAAAGAATTAGCTCCCGAAACTACTCGTCCGATTGAGACTAAAACTACACAGAATAAAGATAACAAAGATTCATCATCCAATATCAAAATTACAGCTAATAACAGAAAGATTGGCACTACTGTTTCATATGATCGTATTAAAACTAATATGAAGATTGGTGGAAACATTGATCTTTTTGATCATGGAAGAATAATTATTCCAAAGATCCAAGTTTAA

mRNA sequence

ATGGCTGCGGCAAGATGTTTCAAGCTCTTACCCACCCTTCTCTTAGTGTTTGTTTGGCAATATTGTGCTAAAGTTGGGGCCAGTGGCTTTTTCGACGACTTTGACAGCGGTTCATTTGGATCAAGTGGTGTTGGGATGCTAGTGATCAAGAATCGTGGCGTTGCACCTAACTCAAACATGATAGATCCTAAAGAATTAGCTCCCGAAACTACTCGTCCGATTGAGACTAAAACTACACAGAATAAAGATAACAAAGATTCATCATCCAATATCAAAATTACAGCTAATAACAGAAAGATTGGCACTACTGTTTCATATGATCGTATTAAAACTAATATGAAGATTGGTGGAAACATTGATCTTTTTGATCATGGAAGAATAATTATTCCAAAGATCCAAGTTTAA

Coding sequence (CDS)

ATGGCTGCGGCAAGATGTTTCAAGCTCTTACCCACCCTTCTCTTAGTGTTTGTTTGGCAATATTGTGCTAAAGTTGGGGCCAGTGGCTTTTTCGACGACTTTGACAGCGGTTCATTTGGATCAAGTGGTGTTGGGATGCTAGTGATCAAGAATCGTGGCGTTGCACCTAACTCAAACATGATAGATCCTAAAGAATTAGCTCCCGAAACTACTCGTCCGATTGAGACTAAAACTACACAGAATAAAGATAACAAAGATTCATCATCCAATATCAAAATTACAGCTAATAACAGAAAGATTGGCACTACTGTTTCATATGATCGTATTAAAACTAATATGAAGATTGGTGGAAACATTGATCTTTTTGATCATGGAAGAATAATTATTCCAAAGATCCAAGTTTAA

Protein sequence

MAAARCFKLLPTLLLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNMIDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNIDLFDHGRIIIPKIQV

Homology

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BLAST of CsGy7G016160 vs. NCBI nr
Match: KGN44968.1 (hypothetical protein Csa_7G399270 [Cucumis sativus])

HSP 1 Score: 261.2 bits (666), Expect = 2.0e-66
Identity = 132/134 (98.51%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MAAARCFKLLPTLLLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM 60
           MA ARCFKLLPTL LVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM
Sbjct: 1   MAVARCFKLLPTLFLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM 60

Query: 61  IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID 120
           IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID
Sbjct: 61  IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID 120

Query: 121 LFDHGRIIIPKIQV 135
           LFDHGRIIIPKIQV
Sbjct: 121 LFDHGRIIIPKIQV 134

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BLAST of CsGy7G016160 vs. NCBI nr
Match: KGN44950.1 (hypothetical protein Csa_7G398120 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 4.8e-04
Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = 0


Query: 1   MAAARCFKLLPTLLLVFVWQYCAKVGA-----SGFFDDFDSGSFGSSGVGMLVIKNRGVA 60
           M+ A   KL  T+LL+  WQYCAKV A     +GFF DF+ GSFGS G G++     G +
Sbjct: 1   MSIAIGSKLFHTVLLMLAWQYCAKVDATFKDVTGFF-DFNLGSFGSGGAGIMGGTKNGGS 60

Query: 61  PNSNMIDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKI 120
           P     +  E+AP    P+   T  N ++  +SS     + N   G  +S    K N+K 
Sbjct: 61  P----ANAPEMAPGIA-PVGFDTPTNNEDSGASSFDFDFSKNINGGVDLSNGAHKLNLKG 120

Query: 121 GGNIDL 122
            G +DL
Sbjct: 121 SGTLDL 120

[Close]

BLAST of CsGy7G016160 vs. NCBI nr
Match: XP_011659777.1 (PREDICTED: keratin, type I cytoskeletal 9-like [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 4.8e-04
Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = 0


Query: 1   MAAARCFKLLPTLLLVFVWQYCAKVGA-----SGFFDDFDSGSFGSSGVGMLVIKNRGVA 60
           M+ A   KL  T+LL+  WQYCAKV A     +GFF DF+ GSFGS G G++     G +
Sbjct: 1   MSIAIGSKLFHTVLLMLAWQYCAKVDATFKDVTGFF-DFNLGSFGSGGAGIMGGTKNGGS 60

Query: 61  PNSNMIDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKI 120
           P     +  E+AP    P+   T  N ++  +SS     + N   G  +S    K N+K 
Sbjct: 61  P----ANAPEMAPGIA-PVGFDTPTNNEDSGASSFDFDFSKNINGGVDLSNGAHKLNLKG 120

Query: 121 GGNIDL 122
            G +DL
Sbjct: 121 SGTLDL 120

[Close]

BLAST of CsGy7G016160 vs. TrEMBL
Match: tr|A0A0A0K668|A0A0A0K668_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399270 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.3e-66
Identity = 132/134 (98.51%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MAAARCFKLLPTLLLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM 60
           MA ARCFKLLPTL LVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM
Sbjct: 1   MAVARCFKLLPTLFLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM 60

Query: 61  IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID 120
           IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID
Sbjct: 61  IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID 120

Query: 121 LFDHGRIIIPKIQV 135
           LFDHGRIIIPKIQV
Sbjct: 121 LFDHGRIIIPKIQV 134

[Close]

BLAST of CsGy7G016160 vs. TrEMBL
Match: tr|A0A0A0K5G8|A0A0A0K5G8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398120 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.2e-04
Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = 0


Query: 1   MAAARCFKLLPTLLLVFVWQYCAKVGA-----SGFFDDFDSGSFGSSGVGMLVIKNRGVA 60
           M+ A   KL  T+LL+  WQYCAKV A     +GFF DF+ GSFGS G G++     G +
Sbjct: 1   MSIAIGSKLFHTVLLMLAWQYCAKVDATFKDVTGFF-DFNLGSFGSGGAGIMGGTKNGGS 60

Query: 61  PNSNMIDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKI 120
           P     +  E+AP    P+   T  N ++  +SS     + N   G  +S    K N+K 
Sbjct: 61  P----ANAPEMAPGIA-PVGFDTPTNNEDSGASSFDFDFSKNINGGVDLSNGAHKLNLKG 120

Query: 121 GGNIDL 122
            G +DL
Sbjct: 121 SGTLDL 120

The following BLAST results are available for this feature:

BLAST of CsGy7G016160 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44968.1	2.0e-66	98.51	hypothetical protein Csa_7G399270 [Cucumis sativus]	[more]
KGN44950.1	4.8e-04	36.51	hypothetical protein Csa_7G398120 [Cucumis sativus]	[more]
XP_011659777.1	4.8e-04	36.51	PREDICTED: keratin, type I cytoskeletal 9-like [Cucumis sativus]	[more]

BLAST of CsGy7G016160 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy7G016160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy7G016160 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K668\|A0A0A0K668_CUCSA	1.3e-66	98.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399270 PE=4 SV=1	[more]
tr\|A0A0A0K5G8\|A0A0A0K5G8_CUCSA	3.2e-04	36.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398120 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G016160.1	CsGy7G016160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G016160	Csa7G399270	Cucumber (Chinese Long) v2	cgybcuB323
CsGy7G016160	MELO3C015977	Melon (DHL92) v3.5.1	cgybmeB470
CsGy7G016160	CSPI07G17720	Wild cucumber (PI 183967)	cgybcpiB331
CsGy7G016160	MELO3C015977.2	Melon (DHL92) v3.6.1	cgybmedB467
CsGy7G016160	Bhi09G000746	Wax gourd	cgybwgoB660

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G016160	Cucumber (Gy14) v2	cgybcgybB134
CsGy7G016160	Cucurbita maxima (Rimu)	cgybcmaB925
CsGy7G016160	Cucurbita maxima (Rimu)	cgybcmaB973
CsGy7G016160	Cucurbita moschata (Rifu)	cgybcmoB909
CsGy7G016160	Cucurbita moschata (Rifu)	cgybcmoB955
CsGy7G016160	Cucurbita pepo (Zucchini)	cgybcpeB906
CsGy7G016160	Cucurbita pepo (Zucchini)	cgybcpeB931
CsGy7G016160	Bottle gourd (USVL1VR-Ls)	cgyblsiB472
CsGy7G016160	Melon (DHL92) v3.5.1	cgybmeB501
CsGy7G016160	Melon (DHL92) v3.6.1	cgybmedB497
CsGy7G016160	Watermelon (Charleston Gray)	cgybwcgB479
CsGy7G016160	Watermelon (Charleston Gray)	cgybwcgB486
CsGy7G016160	Watermelon (Charleston Gray)	cgybwcgB492
CsGy7G016160	Watermelon (97103) v1	cgybwmB537
CsGy7G016160	Watermelon (97103) v1	cgybwmB522
CsGy7G016160	Watermelon (97103) v1	cgybwmB530
CsGy7G016160	Silver-seed gourd	carcgybB0120
CsGy7G016160	Silver-seed gourd	carcgybB0569
CsGy7G016160	Silver-seed gourd	carcgybB0807
CsGy7G016160	Cucumber (Chinese Long) v3	cgybcucB336
CsGy7G016160	Cucumber (Chinese Long) v3	cgybcucB347
CsGy7G016160	Watermelon (97103) v2	cgybwmbB490
CsGy7G016160	Watermelon (97103) v2	cgybwmbB536
CsGy7G016160	Watermelon (97103) v2	cgybwmbB543
CsGy7G016160	Wax gourd	cgybwgoB618
CsGy7G016160	Wax gourd	cgybwgoB626