Csa7G399270 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G399270
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 15439684 .. 15440088 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTGGCAAGATGTTTCAAGCTCTTACCCACCCTTTTCTTAGTGTTTGTTTGGCAATATTGTGCTAAAGTTGGGGCCAGTGGCTTTTTCGACGACTTTGACAGCGGTTCATTTGGATCAAGTGGTGTTGGGATGCTAGTGATCAAGAATCGTGGCGTTGCACCTAACTCAAACATGATAGATCCTAAAGAATTAGCTCCCGAAACTACTCGTCCGATTGAGACTAAAACTACACAGAATAAAGATAACAAAGATTCATCATCCAATATCAAAATTACAGCTAATAACAGAAAGATTGGCACTACTGTTTCATATGATCGTATTAAAACTAATATGAAGATTGGTGGAAACATTGATCTTTTTGATCATGGAAGAATAATTATTCCAAAGATCCAAGTTTAA

mRNA sequence

ATGGCTGTGGCAAGATGTTTCAAGCTCTTACCCACCCTTTTCTTAGTGTTTGTTTGGCAATATTGTGCTAAAGTTGGGGCCAGTGGCTTTTTCGACGACTTTGACAGCGGTTCATTTGGATCAAGTGGTGTTGGGATGCTAGTGATCAAGAATCGTGGCGTTGCACCTAACTCAAACATGATAGATCCTAAAGAATTAGCTCCCGAAACTACTCGTCCGATTGAGACTAAAACTACACAGAATAAAGATAACAAAGATTCATCATCCAATATCAAAATTACAGCTAATAACAGAAAGATTGGCACTACTGTTTCATATGATCGTATTAAAACTAATATGAAGATTGGTGGAAACATTGATCTTTTTGATCATGGAAGAATAATTATTCCAAAGATCCAAGTTTAA

Coding sequence (CDS)

ATGGCTGTGGCAAGATGTTTCAAGCTCTTACCCACCCTTTTCTTAGTGTTTGTTTGGCAATATTGTGCTAAAGTTGGGGCCAGTGGCTTTTTCGACGACTTTGACAGCGGTTCATTTGGATCAAGTGGTGTTGGGATGCTAGTGATCAAGAATCGTGGCGTTGCACCTAACTCAAACATGATAGATCCTAAAGAATTAGCTCCCGAAACTACTCGTCCGATTGAGACTAAAACTACACAGAATAAAGATAACAAAGATTCATCATCCAATATCAAAATTACAGCTAATAACAGAAAGATTGGCACTACTGTTTCATATGATCGTATTAAAACTAATATGAAGATTGGTGGAAACATTGATCTTTTTGATCATGGAAGAATAATTATTCCAAAGATCCAAGTTTAA

Protein sequence

MAVARCFKLLPTLFLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNMIDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNIDLFDHGRIIIPKIQV*

Homology

[Close]

BLAST of Csa7G399270 vs. TrEMBL
Match: A0A0A0K668_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G399270 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 3.1e-70
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1


Query: 1   MAVARCFKLLPTLFLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM 60
           MAVARCFKLLPTLFLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM
Sbjct: 1   MAVARCFKLLPTLFLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM 60

Query: 61  IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID 120
           IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID
Sbjct: 61  IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID 120

Query: 121 LFDHGRIIIPKIQV 135
           LFDHGRIIIPKIQV
Sbjct: 121 LFDHGRIIIPKIQV 134

[Close]

BLAST of Csa7G399270 vs. NCBI nr
Match: gi|700189735|gb|KGN44968.1| (hypothetical protein Csa_7G399270 [Cucumis sativus])

HSP 1 Score: 272.3 bits (695), Expect = 4.5e-70
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1


Query: 1   MAVARCFKLLPTLFLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM 60
           MAVARCFKLLPTLFLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM
Sbjct: 1   MAVARCFKLLPTLFLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM 60

Query: 61  IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID 120
           IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID
Sbjct: 61  IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID 120

Query: 121 LFDHGRIIIPKIQV 135
           LFDHGRIIIPKIQV
Sbjct: 121 LFDHGRIIIPKIQV 134

The following BLAST results are available for this feature:

BLAST of Csa7G399270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K668_CUCSA	3.1e-70	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G399270 PE=4 SV=1	[more]

BLAST of Csa7G399270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189735\|gb\|KGN44968.1\|	4.5e-70	100.00	hypothetical protein Csa_7G399270 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G399270.1	Csa7G399270.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G399270	MELO3C015977	Melon (DHL92) v3.5.1	cumeB532
Csa7G399270	MELO3C028929.2	Melon (DHL92) v3.6.1	cumedB511
Csa7G399270	Bhi09G000746	Wax gourd	cuwgoB691
Csa7G399270	CSPI07G17720	Wild cucumber (PI 183967)	cpicuB354
Csa7G399270	CsGy7G016160	Cucumber (Gy14) v2	cgybcuB323

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G399270	Silver-seed gourd	carcuB0119
Csa7G399270	Silver-seed gourd	carcuB0594
Csa7G399270	Silver-seed gourd	carcuB0833
Csa7G399270	Watermelon (97103) v2	cuwmbB517
Csa7G399270	Watermelon (97103) v2	cuwmbB539
Csa7G399270	Watermelon (97103) v2	cuwmbB565
Csa7G399270	Watermelon (97103) v2	cuwmbB572
Csa7G399270	Wax gourd	cuwgoB650
Csa7G399270	Wax gourd	cuwgoB657
Csa7G399270	Cucumber (Chinese Long) v2	cucuB149
Csa7G399270	Cucumber (Gy14) v1	cgycuB312
Csa7G399270	Cucurbita maxima (Rimu)	cmacuB388
Csa7G399270	Cucurbita maxima (Rimu)	cmacuB914
Csa7G399270	Cucurbita moschata (Rifu)	cmocuB378
Csa7G399270	Cucurbita moschata (Rifu)	cmocuB900
Csa7G399270	Watermelon (Charleston Gray)	cuwcgB526
Csa7G399270	Watermelon (Charleston Gray)	cuwcgB531
Csa7G399270	Watermelon (97103) v1	cuwmB568
Csa7G399270	Watermelon (97103) v1	cuwmB588
Csa7G399270	Watermelon (97103) v1	cuwmB574
Csa7G399270	Cucurbita pepo (Zucchini)	cpecuB161
Csa7G399270	Cucurbita pepo (Zucchini)	cpecuB343
Csa7G399270	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G399270	Bottle gourd (USVL1VR-Ls)	culsiB516