MELO3C015368 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015368
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Trafficking protein particle complex subunit 6b, putative
Location	chr2 : 1114021 .. 1117550 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCCTTTAGTAGTTGAATCTAGACTGAGGGCGGAATCAAGGCAGTGACTCGATCGATCTTCTCTCATTCTCCATCTTGTTCTTGATTTCCTTCCCAATTCTATCGAAGTGAGCTTCTTCAGCTTTCTACAATTCCACTTTGGTCGAAGGTAAAAACACATGGGGAGAGAGGTAGCAGAGAGTTGCGTTGACAGTCTATTGACGGAAATGGTTTCCACTTATTGCCATCGATTCTACGCCAATAAGCCGGAGCTAGCCGCCCGTCGGATCGAGGCAATTGGTTATCAGGTTGGCCATCAGCTCTCCGAACGGTATTCCTTCAACCCCACTTTCTACCCATCTTTTTTTGTTGCTTAGATTTTGATTTCCAATGTTGGCTAATGGATCTCTGATTCAGTTTCCTAATTCTTTCATACTTTTTTCTGTTTTACTGAATGTATATGTTGGGAGATTTATATTTGAGCTTGGGAAGAACAATAGTTGGGACTAGAATTGAGGGTTAGAAGTGTTTCACCAACACCCCACCACATAGGAAAAGGAATTTTGTGTAATTGAAAACATCTATTCTATAATGAAAGCAGGAGGACAAAAAGTTGAATTTTTCAGGATAATAAAATCATATATTGACATGGACTAGTTTTTGGGATATGACAGATACTCCATAACCAAAACAGTATACATGACAATGGCTAGGCTCTAGAGTTACTTCTGATCATCGTTTGCAGTGCTTAGACGGCCATTTTGAAATGGGTTCTAACCCCCCCTTCAGATTTGAGAATATGTGCATTTTTCGTCCCTCTTTTAGAGCCTAGCTTATTTTACCCTTCTAATGTGCCGCAGAGGTAGAGGTCTTAGGAAAATGGGAAGGTTATTGTTTTTGGGTAAGCCTCACAGTTTGAGAGAGTCCCTTAATTCGGAATCGTGAAGTTTTTGGAGACTTGAAAATCAAGAAACTAGATTAACTAAATTGTAATACCATGATGGGTTGATTGGAAGAGGTGCTTTGAACAGAGAGAGGGAAGGTTATCTCTGAAAGTTGAGTTTGAAGAGGTGATTAATTGTGAAACTATCTGCTGGAGGCAAAACGCTAAATGTACATAGGCTTTGGAGGGTAACAACACTGCTTACCTCCATAGGGTTGACCACACAGAAAGTAATTGTTTTCATAAATTAGTAAAAAAGAAATAGAAAGAGAAAAACCCACTGGTCTGCAAAGATGGGAAACTATACGATAAGGAGACTGAAACGGGAGTTCTCTCTTTTTTATCTTCTCTTCATGGTTTGACTGTGGATTATCTCACCTAAGCCTTTCCTTGAGGGGCTCTCCCATCTCAAATGAACCCCAGCCTGATGGTTTCACTATGGCGTTTTTCTAGATAACTGGGGCTTATGATCTTTGGAAAGTGACTTTTGAGTTATATAAGCGAGGAGTGGTGGATAAGTCAATGAACAAAACTTTTTTCTCCTGTTTCCTAAGAAGGAAGAAATGTGAAGAATCTAGGAGTTTAGACCCAAGAAATGTGAAGGTTTAGAAGTTTAGACCCATGAGCATTCTCGCTTGGGTATATAAAATTCTAGCACACTATTGCATTGTTATTAACTAGATATGTCTTCAATAAATGTATGACTCCTATTGTTCAAAAGGATGAAATTGATTGGTTGATTCAAGTGATGTTGACAGGGGTCTGGGATTGAACAATTGTGTACTAGATTGTTTTCAAGCCTATTTTATTGATTCAGAGAATACTTACGTTTGTTGTTGGTTATAAGCTTTAAATTGCGTAATGATTTCGAACAAATATCTCATTTGAGTAGTAGATGAGTTGCTAGATGAACTGTATGCTGGCAATATCTTTTCCAAAACCAAGAAGTGTACCCCGATTAAGCTCTTACTAGAGGATATCCATAGTAATGCCGTGAAGGTTGAGTTAATATTCCCTTAACTTTGCAGTCTGTAATGGATAATGTCCTTTGGCCCTTCTTACACGTTGTCTTGTTCTGGTTTATAGTGTCAAGTTGAAGGATCATTTGAGCTTCTTGCAGTAGTCTTCAGTGCTTCGGGACCATCAGTTAGTTACTAAAAAGTGTCAGCTTGCATTATCCCACGTCCTGTAGTTAGCCATGTAGTGCTAGCTTAACCATTGAAGTTGCTTCTAATCCTTTATACAATTGCTGCAAAGGACCAATGGTATGTACCCCAATAGTTTGGAGTTATGTGGGTTCTAGGCCAGTATGATAACTATCAAATCTTTTGTCAATTGTGAAATTGGGGGTGGCCACGGTTGTAATGTTAATGCAAGAATCTTACCCGACAAGAGGTATATGGTATGTGGTATACTAGATGTGAAGATGAAAGGAGGGGTGTGCAGGAACTCTCTAATCTTTCCCCAGAGACGTTTGTTTCCCTGTTTAGCTAGTAAAATATTCTGCTGGGAGTCTCAATACATTATGACTTAGCTTCCATTTCCATTCCCGTTTTATGGCTTCTTATTCATGGTACTTGACAACTAAATACTGCAACTTTACTGTTAAGCTTTGTTTTCAGGTATACGATGGAGCGGCCTCGGTTCACTGATCATCTTGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCTGAACTCTTCAAAAAGCAAATAGACAACTTGAAAACAAATCATAGAGTAAGATCAGAAGTCAAACCTAGAAGCAGCCGTTCTTTTTCTTGTGTACTGTGCTTGATCCTTCATGAACTTGACCTAAATATGGAAATTTGTTTTGATTCTCAGGGCACCTTTGTCTTGCAAGATAATCGATTCCGCTGGCTTACTCGCATGTCGGTGGATCCTCAAAATGAATCACAAGATAATTCTGCAGATGGTGAAAACAAGGCAGCTCAAGCAACAAGCATGCATCTATATTTCCCATGCGGAATCATTAGAGGTGCTCTTTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTTCCAGCATGTAAGTAATCAAACTTCAATCATAATCCCCACTTTGCTTCTTTGTTCCAGAACTGAGAAAATGACCTGTTGAAACCACTTTGTTTTATGAAATAGGTTCATTTGTTGTTCGTATAAAGGCCTGATGAGAAGTGTATCAAAAAGTAGAGATTTTATCTTTGGGATATGAAGACATGATAGATCCTTAACACCACTCTCCAGTTGCAATCCTTTCTGTCCTGTTTCCTTTTTTGCTTTCTCTATTCCTCTATCTTCTCCTAGTTCATGAAACTCTTAGCACAAAAATCTGTTGGACAAACGTTTGTGTATGTATGAAAGTCAATAGCGATTTCTTTTCAGAATTTCATGACTGTAGAGATAGTTGAGGTTTATTTTATATTTTACCATTTGGGAGGATTGATTCATATGCTATGAATCTGTAATGATCACCTATCTGGATTGTTAAGGTTCTATGGGTTTCGAGATGATTAAAATATTGTAGGGTTGATCATTCATGAGATTGTTGTAGACATGTGTAAACCTATCTAAACAGTTATGGAGAC

mRNA sequence

ATGTCGTCCTTTAGTAGTTGAATCTAGACTGAGGGCGGAATCAAGGCAGTGACTCGATCGATCTTCTCTCATTCTCCATCTTGTTCTTGATTTCCTTCCCAATTCTATCGAAGTGAGCTTCTTCAGCTTTCTACAATTCCACTTTGGTCGAAGGTAAAAACACATGGGGAGAGAGGTAGCAGAGAGTTGCGTTGACAGTCTATTGACGGAAATGGTTTCCACTTATTGCCATCGATTCTACGCCAATAAGCCGGAGCTAGCCGCCCGTCGGATCGAGGCAATTGGTTATCAGGTTGGCCATCAGCTCTCCGAACGGTATACGATGGAGCGGCCTCGGTTCACTGATCATCTTGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCTGAACTCTTCAAAAAGCAAATAGACAACTTGAAAACAAATCATAGAGGCACCTTTGTCTTGCAAGATAATCGATTCCGCTGGCTTACTCGCATGTCGGTGGATCCTCAAAATGAATCACAAGATAATTCTGCAGATGGTGAAAACAAGGCAGCTCAAGCAACAAGCATGCATCTATATTTCCCATGCGGAATCATTAGAGGTGCTCTTTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTTCCAGCATGTTCATTTGTTGTTCGTATAAAGGCCTGATGAGAAGTGTATCAAAAAGTAGAGATTTTATCTTTGGGATATGAAGACATGATAGATCCTTAACACCACTCTCCAGTTGCAATCCTTTCTGTCCTGTTTCCTTTTTTGCTTTCTCTATTCCTCTATCTTCTCCTAGTTCATGAAACTCTTAGCACAAAAATCTGTTGGACAAACGTTTGTGTATGTATGAAAGTCAATAGCGATTTCTTTTCAGAATTTCATGACTGTAGAGATAGTTGAGGTTTATTTTATATTTTACCATTTGGGAGGATTGATTCATATGCTATGAATCTGTAATGATCACCTATCTGGATTGTTAAGGTTCTATGGGTTTCGAGATGATTAAAATATTGTAGGGTTGATCATTCATGAGATTGTTGTAGACATGTGTAAACCTATCTAAACAGTTATGGAGAC

Coding sequence (CDS)

ATGGGGAGAGAGGTAGCAGAGAGTTGCGTTGACAGTCTATTGACGGAAATGGTTTCCACTTATTGCCATCGATTCTACGCCAATAAGCCGGAGCTAGCCGCCCGTCGGATCGAGGCAATTGGTTATCAGGTTGGCCATCAGCTCTCCGAACGGTATACGATGGAGCGGCCTCGGTTCACTGATCATCTTGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCTGAACTCTTCAAAAAGCAAATAGACAACTTGAAAACAAATCATAGAGGCACCTTTGTCTTGCAAGATAATCGATTCCGCTGGCTTACTCGCATGTCGGTGGATCCTCAAAATGAATCACAAGATAATTCTGCAGATGGTGAAAACAAGGCAGCTCAAGCAACAAGCATGCATCTATATTTCCCATGCGGAATCATTAGAGGTGCTCTTTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTTCCAGCATGTTCATTTGTTGTTCGTATAAAGGCCTGA

Protein sequence

MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA*

Homology

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BLAST of MELO3C015368 vs. Swiss-Prot
Match: TPC6B_BOVIN (Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.8e-31
Identity = 67/135 (49.63%), Postives = 90/135 (66.67%), Query Frame = 1


Query: 36  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 95
           ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL
Sbjct: 35  KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94

Query: 96  QDNRFRWLTRMSVDPQNESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSA 155
           QDN+FR LT+MS   Q               +  S +L F CG+IRG LSNLGI   V+A
Sbjct: 95  QDNKFRLLTQMSAGKQ-------------YLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 154

Query: 156 DISNLPACSFVVRIK 171
           ++S++PAC F V I+
Sbjct: 155 EVSSMPACKFQVMIQ 156

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BLAST of MELO3C015368 vs. Swiss-Prot
Match: TPC6B_HUMAN (Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.8e-31
Identity = 67/135 (49.63%), Postives = 90/135 (66.67%), Query Frame = 1


Query: 36  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 95
           ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL
Sbjct: 35  KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94

Query: 96  QDNRFRWLTRMSVDPQNESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSA 155
           QDN+FR LT+MS   Q               +  S +L F CG+IRG LSNLGI   V+A
Sbjct: 95  QDNKFRLLTQMSAGKQ-------------YLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 154

Query: 156 DISNLPACSFVVRIK 171
           ++S++PAC F V I+
Sbjct: 155 EVSSMPACKFQVMIQ 156

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BLAST of MELO3C015368 vs. Swiss-Prot
Match: TPC6B_MOUSE (Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.9e-31
Identity = 65/135 (48.15%), Postives = 90/135 (66.67%), Query Frame = 1


Query: 36  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 95
           ++E++G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL
Sbjct: 35  KLESMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94

Query: 96  QDNRFRWLTRMSVDPQNESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSA 155
           QDN+FR L ++S   Q               +  S +L F CG+IRG LSNLGI   V+A
Sbjct: 95  QDNKFRLLIQLSAGKQ-------------YLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 154

Query: 156 DISNLPACSFVVRIK 171
           ++S++PAC F V I+
Sbjct: 155 EVSSMPACKFQVMIQ 156

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BLAST of MELO3C015368 vs. Swiss-Prot
Match: TPC6A_MOUSE (Trafficking protein particle complex subunit 6A OS=Mus musculus GN=Trappc6a PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 8.1e-24
Identity = 54/134 (40.30%), Postives = 77/134 (57.46%), Query Frame = 1


Query: 37  IEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQ 96
           +E +G++VG  L ER  +E P F + L+A+KF+C+D W+ +F+K +D L+TNH+GT+VLQ
Sbjct: 37  LEGLGFRVGQALGERLPLETPAFREELDALKFLCRDLWAAMFQKHMDGLRTNHQGTYVLQ 96

Query: 97  DNRFRWLTRMSVDPQNESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSAD 156
           DN F  L  M   PQ               +     L F CG++ GAL  LG    V+A 
Sbjct: 97  DNSFPLLVTMGSGPQ-------------YLEEAPKFLAFTCGLLCGALHTLGFQSLVTAS 156

Query: 157 ISNLPACSFVVRIK 171
           +++LPAC F V I+
Sbjct: 157 VASLPACKFQVVIQ 157

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BLAST of MELO3C015368 vs. Swiss-Prot
Match: TPC6A_BOVIN (Trafficking protein particle complex subunit 6A OS=Bos taurus GN=TRAPPC6A PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.8e-23
Identity = 57/134 (42.54%), Postives = 77/134 (57.46%), Query Frame = 1


Query: 37  IEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQ 96
           +E +G++VG  L ER   E   F + L+ +KF+CKD W  +F KQ+D+L+TNH+GT+VLQ
Sbjct: 37  LEGMGFRVGQALGERLPRETLTFREELDILKFLCKDLWVAVFHKQMDSLRTNHQGTYVLQ 96

Query: 97  DNRFRWLTRMSVDPQNESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSAD 156
           DN F  L RM            A G     +A    L F CG++RG LS LG+   V+A 
Sbjct: 97  DNSFPLLVRM------------ASGLQYLEEAPKF-LAFTCGLLRGTLSTLGVKSLVTAS 156

Query: 157 ISNLPACSFVVRIK 171
           ++ LPAC F V I+
Sbjct: 157 VAALPACKFQVVIQ 157

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BLAST of MELO3C015368 vs. TrEMBL
Match: A0A0A0M1M8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573010 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 8.8e-94
Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 1


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120

Query: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
           GENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 GENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 171

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BLAST of MELO3C015368 vs. TrEMBL
Match: A5AGD5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g00700 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 1.6e-82
Identity = 156/175 (89.14%), Postives = 165/175 (94.29%), Query Frame = 1


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREV+ESCV+SLLTEMVS+YC RFYA+KP+LAARRIEAIGYQVGHQLSERYTMERPRF+
Sbjct: 1   MGREVSESCVESLLTEMVSSYCTRFYADKPDLAARRIEAIGYQVGHQLSERYTMERPRFS 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNE----SQD 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDN+FRWL+RMSVDP  E    +QD
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNKFRWLSRMSVDPSPENTGSAQD 120

Query: 121 NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
            S D ENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 PSTD-ENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 174

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BLAST of MELO3C015368 vs. TrEMBL
Match: A0A067JUC3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23423 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 7.7e-82
Identity = 155/175 (88.57%), Postives = 161/175 (92.00%), Query Frame = 1


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREV+ESCVDSLLTEMVS+YC+RF ANKPELA RRIEAIGYQVGHQL+ERYTMERPRF+
Sbjct: 1   MGREVSESCVDSLLTEMVSSYCNRFDANKPELAGRRIEAIGYQVGHQLAERYTMERPRFS 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNE----SQD 120
           DHLEAIKFICKDFWSE+FKKQIDNLKTNHRGTFVLQDNRFRWL RMSVDP  E    SQD
Sbjct: 61  DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNRFRWLARMSVDPTIESGGASQD 120

Query: 121 NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
            SA  ENKA QA SMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 PSALAENKATQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 175

[Close]

BLAST of MELO3C015368 vs. TrEMBL
Match: V7BPX9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G096500g PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.0e-81
Identity = 153/174 (87.93%), Postives = 159/174 (91.38%), Query Frame = 1


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           M REV+ESCVDSLLTEMV+ YC+RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MVREVSESCVDSLLTEMVACYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNES---QDN 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDN+FRWL RMSVDP  ++      
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNKFRWLARMSVDPSTDTPVEDST 120

Query: 121 SADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
           S   ENKAAQA SMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 SPTAENKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 174

[Close]

BLAST of MELO3C015368 vs. TrEMBL
Match: A0A061F0S0_THECC (Trafficking protein OS=Theobroma cacao GN=TCM_025944 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.2e-81
Identity = 154/174 (88.51%), Postives = 163/174 (93.68%), Query Frame = 1


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREV+ESC+DSLLTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSERYTM+RPRF+
Sbjct: 1   MGREVSESCIDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMDRPRFS 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD--PQN-ESQDN 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMS+D  P+N  S+D 
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSIDQSPENGASEDT 120

Query: 121 SADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
           S   +NKA Q  SMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 SIMADNKAVQ--SMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172

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BLAST of MELO3C015368 vs. TAIR10
Match: AT3G05000.1 (AT3G05000.1 Transport protein particle (TRAPP) component)

HSP 1 Score: 303.1 bits (775), Expect = 1.1e-82
Identity = 145/173 (83.82%), Postives = 159/173 (91.91%), Query Frame = 1


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVAESCVD++L EMV+ Y  RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRF+
Sbjct: 1   MGREVAESCVDTMLMEMVAMYSGRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFS 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP--QNESQDNS 120
           DHLEAIKFICKDFWSE+FKKQIDNLKTNHRGTFVLQDN+FRWL+R+S+DP  +NE+QD S
Sbjct: 61  DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNKFRWLSRVSIDPSSENETQDPS 120

Query: 121 ADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
             GE+KAAQA SM+LYFPCGIIRG LSNLGIPCAVSADIS+LP CSFV+R+KA
Sbjct: 121 TPGESKAAQAVSMYLYFPCGIIRGVLSNLGIPCAVSADISSLPTCSFVIRVKA 173

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BLAST of MELO3C015368 vs. NCBI nr
Match: gi|659099689|ref|XP_008450728.1| (PREDICTED: trafficking protein particle complex subunit 6B isoform X2 [Cucumis melo])

HSP 1 Score: 352.4 bits (903), Expect = 4.3e-94
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120

Query: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
           GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 171

[Close]

BLAST of MELO3C015368 vs. NCBI nr
Match: gi|449435724|ref|XP_004135644.1| (PREDICTED: trafficking protein particle complex subunit 6B [Cucumis sativus])

HSP 1 Score: 350.9 bits (899), Expect = 1.3e-93
Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 1


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120

Query: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
           GENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 GENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 171

[Close]

BLAST of MELO3C015368 vs. NCBI nr
Match: gi|659099687|ref|XP_008450727.1| (PREDICTED: trafficking protein particle complex subunit 6B isoform X1 [Cucumis melo])

HSP 1 Score: 346.7 bits (888), Expect = 2.4e-92
Identity = 171/175 (97.71%), Postives = 171/175 (97.71%), Query Frame = 1


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSER----YTMER 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSER    YTMER
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFRYTMER 60

Query: 61  PRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQD 120
           PRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQD
Sbjct: 61  PRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQD 120

Query: 121 NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
           NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 175

[Close]

BLAST of MELO3C015368 vs. NCBI nr
Match: gi|1009117395|ref|XP_015875295.1| (PREDICTED: trafficking protein particle complex subunit 6B [Ziziphus jujuba])

HSP 1 Score: 320.1 bits (819), Expect = 2.4e-84
Identity = 156/174 (89.66%), Postives = 162/174 (93.10%), Query Frame = 1


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVAESCVDS+LTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRF 
Sbjct: 1   MGREVAESCVDSILTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFN 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNE---SQDN 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDN+FRWL+RMS+DP      SQDN
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNKFRWLSRMSIDPSENGDLSQDN 120

Query: 121 SADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
               ENKAAQ TSMHLYFPCGIIRGALSNLGIPCAVSAD+SNLPACSFVVRIKA
Sbjct: 121 PEAAENKAAQMTSMHLYFPCGIIRGALSNLGIPCAVSADMSNLPACSFVVRIKA 174

[Close]

BLAST of MELO3C015368 vs. NCBI nr
Match: gi|225451136|ref|XP_002269746.1| (PREDICTED: trafficking protein particle complex subunit 6B [Vitis vinifera])

HSP 1 Score: 313.5 bits (802), Expect = 2.2e-82
Identity = 156/175 (89.14%), Postives = 165/175 (94.29%), Query Frame = 1


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREV+ESCV+SLLTEMVS+YC RFYA+KP+LAARRIEAIGYQVGHQLSERYTMERPRF+
Sbjct: 1   MGREVSESCVESLLTEMVSSYCTRFYADKPDLAARRIEAIGYQVGHQLSERYTMERPRFS 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNE----SQD 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDN+FRWL+RMSVDP  E    +QD
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNKFRWLSRMSVDPSPENTGSAQD 120

Query: 121 NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
            S D ENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 PSTD-ENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 174

The following BLAST results are available for this feature:

BLAST of MELO3C015368 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TPC6B_BOVIN	1.8e-31	49.63	Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 S...	[more]
TPC6B_HUMAN	1.8e-31	49.63	Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1...	[more]
TPC6B_MOUSE	8.9e-31	48.15	Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=1...	[more]
TPC6A_MOUSE	8.1e-24	40.30	Trafficking protein particle complex subunit 6A OS=Mus musculus GN=Trappc6a PE=1...	[more]
TPC6A_BOVIN	6.8e-23	42.54	Trafficking protein particle complex subunit 6A OS=Bos taurus GN=TRAPPC6A PE=2 S...	[more]

BLAST of MELO3C015368 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1M8_CUCSA	8.8e-94	99.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573010 PE=4 SV=1	[more]
A5AGD5_VITVI	1.6e-82	89.14	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g00700 PE=4 SV=...	[more]
A0A067JUC3_JATCU	7.7e-82	88.57	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23423 PE=4 SV=1	[more]
V7BPX9_PHAVU	1.0e-81	87.93	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G096500g PE=4 SV=1	[more]
A0A061F0S0_THECC	2.2e-81	88.51	Trafficking protein OS=Theobroma cacao GN=TCM_025944 PE=4 SV=1	[more]

BLAST of MELO3C015368 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05000.1	1.1e-82	83.82	Transport protein particle (TRAPP) component	[more]

BLAST of MELO3C015368 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099689\|ref\|XP_008450728.1\|	4.3e-94	100.00	PREDICTED: trafficking protein particle complex subunit 6B isoform X2 [Cucumis m...	[more]
gi\|449435724\|ref\|XP_004135644.1\|	1.3e-93	99.42	PREDICTED: trafficking protein particle complex subunit 6B [Cucumis sativus]	[more]
gi\|659099687\|ref\|XP_008450727.1\|	2.4e-92	97.71	PREDICTED: trafficking protein particle complex subunit 6B isoform X1 [Cucumis m...	[more]
gi\|1009117395\|ref\|XP_015875295.1\|	2.4e-84	89.66	PREDICTED: trafficking protein particle complex subunit 6B [Ziziphus jujuba]	[more]
gi\|225451136\|ref\|XP_002269746.1\|	2.2e-82	89.14	PREDICTED: trafficking protein particle complex subunit 6B [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007194	TRAPP_component
IPR024096	NO_sig/Golgi_transp_ligand-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048868	pollen tube development
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0008150	biological_process
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0043087	regulation of GTPase activity
biological_process	GO:0048193	Golgi vesicle transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005801	cis-Golgi network
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0030008	TRAPP complex
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU51755	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015368T1	MELO3C015368T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU51755	MU51755	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007194	Transport protein particle (TRAPP) component	PFAM	PF04051	TRAPP	coord: 11..169 score: 9.6
IPR024096	NO signalling/Golgi transport ligand-binding domain	unknown	SSF111126	Ligand-binding domain in the NO signalling and Golgi transport	coord: 4..170 score: 6.02
None	No IPR available	GENE3D	G3DSA:3.30.1380.20		coord: 5..164 score: 2.5
None	No IPR available	PANTHER	PTHR12817	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B	coord: 1..171 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015368	Csa1G573010	Cucumber (Chinese Long) v2	cumeB041
MELO3C015368	Cla011303	Watermelon (97103) v1	mewmB271
MELO3C015368	ClCG03G016550	Watermelon (Charleston Gray)	mewcgB245
MELO3C015368	Cla97C03G066860	Watermelon (97103) v2	mewmbB249
MELO3C015368	Bhi02G001765	Wax gourd	mewgoB314
MELO3C015368	CSPI01G27110	Wild cucumber (PI 183967)	cpimeB042
MELO3C015368	CmaCh10G011000	Cucurbita maxima (Rimu)	cmameB070
MELO3C015368	CmoCh10G011770	Cucurbita moschata (Rifu)	cmomeB063
MELO3C015368	Lsi06G001770	Bottle gourd (USVL1VR-Ls)	lsimeB396
MELO3C015368	Cp4.1LG11g09240	Cucurbita pepo (Zucchini)	cpemeB085
MELO3C015368	CsGy1G026290	Cucumber (Gy14) v2	cgybmeB038
MELO3C015368	Carg27085	Silver-seed gourd	carmeB0760
MELO3C015368	CsaV3_1G039430	Cucumber (Chinese Long) v3	cucmeB042

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015368	Cucurbita moschata (Rifu)	cmomeB066
MELO3C015368	Cucurbita pepo (Zucchini)	cpemeB333
MELO3C015368	Cucumber (Gy14) v1	cgymeB481