CsaV3_1G039430 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G039430
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	trafficking protein particle complex subunit 6B
Location	chr1 : 24849492 .. 24853050 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGCATTTAAATTTTGAGGGATGAAAACGTGAAAATATGGATTTTACATGAAATTTAATATTTTGGTGCTGAATTGGTAATCATTCGTACGACATGTCGTCATTTAGTTGTTGAATCTAGACTGAGGGCGGAATCAAGGCAGTGACCCAATCGATCTTCTCTCATCCTCCATCTTGTTTTTGATTTCCTTCCCAATTCCGTCGAAGTGAGCTTCTTCAGCTTTCTACAATTCCACTTTGATCGAAGGTAAAAACACATGGGGAGAGAGGTAGCAGAGAGTTGCGTTGACAGTCTTTTGACGGAAATGGTTTCCACTTATTGCCATCGATTCTACGCCAATAAGCCGGAGCTAGCCGCCCGTCGCATCGAGGCAATTGGTTATCAGGTTGGCCATCAGCTCTCCGAACGGTATTTCTCCAACCCCACTTTCTACCCTTCTTTTTTTGTTGCTTAGATTTTGATTTCCAATGTTGGCTAATGGATCTCTGATTCAGTTTCTTAATTCTTTTTACTCTTTCTGTTTTACTGAATGTATATGTTGGGAGATTTATATTTGAGCTTGTGAAGAACAATAGTTGGGACTAGAATTGCGGGTTAGAAGTGTTCCCTCAACACCCCACCACATAGGAAAAGGAATTTTGTGAAATTGAAAACATCTAGCATTCTATAATGAAAGCGGGAGGATAAAAAGTTGAATTTTGCAGGATAATAAAACCATATAATGGACTAGTTTTTGGGATATGACAGATACTCAATAACAAAACAGTATACATGACAATGGCTAGGCTCTAGAGTTACTTCTGATCATCGTTTGGTGTGCTTAGACTTGGTCATTTTGAAATGGGTTCCAATCCCCCCTTCAGATTTGAGAATATGTGCATGTTTCGTCCCTCTTTTAGAGCCTAGCCTATTTTACCCTTCAAGTGTGCGCCAGAGGTAGAGGTCTTAGGAAAATGGGAAGGTTATGGTTTTTGGGTAAGCCTCACAGTTTGAGAGAGTCCCTTAATTCGGAATCGTGAAGTTTTTGGCGACTGAAAATCCAGAAACTAGATTAACTAAACTGTAATACCATGATGGGTTGATTGGAAGAGGTGCTTTAAACAGAGAGAGGGAAGGTTATCTCTGAAAGTTGAGTTTGAAGAGGTGATTATTTGTGAAACTATCTGCTTGAGGCAAAGGGCTAAATTTACATAGGCTAAGGAGGGCAGAACAACACTGCTTACCTCCATATGGTTGGCCACAGCGAAAGTAGTTATTCTCATAATTTTTTTTTAAAAAAAACCACTGGTTTGCAAAGATGGGAAACTGTACGATAAGGAGACTGAAGAGGGAGTTCTCTCTTTTTTCTCCTCTCTTTATGGTTTGACTATGGGTTATCTCACCGAAGCCTTTCCTTGAGGGGCTCTCCCATCTCAAATGAACCCCAGCCAGATGGTTTCACTATGGCGTTTTTCTAGATAACTGGGGTTTATGATCTTTGGAAAGTGTCTTTTGAGCTATACAAGTGAGGAGTGGTGGATAAGTCAATGAACAAAACTTTTGTCTCGCTGTTTCCTAAGAAGGAAAATGTGAAGGATCTAGGAGTTTAGACCCAAGAAATGTGAAGGTTTAGGAGTTTAGACCCATGAGCTTACTCGCTTGGGTATCTCTGATTTTAGCCATGGTCTTGGTGAATGGACGGAGGAAAGTCCTCCCCTGGACTATCTCTGATTTGCAAATGGCCGTCATTCCTTTAAGGAACATCTTGGATCAGGCTCTTATAGCTAATGAGGCTATCGAGGATTATCATAACTGTAAGCCCTTATATTCAAGATTTTTTCCAGAGGAGTGAAGAAAGGAGTTCTTGAGGGTTTTCGGGTGGAGACGATTATCTTCTATTTGCTGATAACTCCATATTCTTTTGTGTGGAAAAGAGGAGTCTTTTGTCAATTTTAATTGAATCTTTTAGTTCTTTGAGTCAAAGACTATCTTAAGTTTAAAGATCATCAAAGACAGACAATATTCCAAAAAAAAAAAAAAGATGAACAAAGACAAATATTGAGTTATTGGTATCCAGGGTATCCCCTCCAAGCTGGAGAGATGGGCTTCTTGGGTGCGTTGTGAAGGATCTTCCTTTTCTTTTTATTTTTATTTCCACGGCCGGGATTTTTTTGTTCCAATGAATCGTAGATCAAATTATTTTTTAAAATGGAGGGATGTGCTTTGGAAGGAAAGTAGAAACTGGGAGGGCAGGAACTCTCTGATCTTTCCCCAGAGATGTTTGTTTTCCTGTTTAACTAGTAAAATATTCTGCTGAGAGTCAATACATTATGAGTCAATACATTATGGCTTAGCTTCCATTTCCGTTCCTGTTTTATGGCTTCTTATTCACGGTACTTGACGACTAAATACTGCAACTTTACTGTTAAGCTTTGTTTTCACTAGGTATACGATGGAGCGGCCTCGGTTCACGGATCATCTTGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCCGAACTCTTCAAAAAGCAAATAGACAACTTGAAAACAAATCATAGGGTAAGATCAAAAGCCAAACCTAGAAGCAGCCGTTCTTTTTCTTGTGTACTGTACTTGATCCTACATGAACTCGACCTAAATATGGAAAATTGTTTTGATTCCCAGGGCACCTTTGTCTTGCAAGATAATCGATTCCGCTGGCTTACTCGCATGTCGGTGGATCCTCAAAATGAATCACAAGATAATTCTGCAGATGGTGAAAACAAGGTAGCTCAAGCAACAAGCATGCATCTATATTTCCCATGCGGAATCATAAGAGGTGCTCTTTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTTCCAGCATGTAAGTAATCAAACTTAAATCATAATCCCCACTTTGCTTCTAGGTTCCAGAACTGAGAAAATGACCTGTTGAAATCACTTTGTTTTATGAAATAGGTTCATTTGTTGTTCGTATAAAGGCCTGATGAGAAGTGTATCAAAAAGTAGAGATTTTATCTTTGGGATATGAAGACTTGGTAGATCCTTAACACCACCCTCCAGTTGCAATCCTTTCTGTTTTGTTTCCTTTTCTGCTTTCTTTATTCCTCTATCTTCTCCTAGTTCACAAAACTCTTAGCACAAAAATCTGTTGGACAAACGTTTGTTGTATGAAAGTCAATAGCGAATACTTTTCAGAATTTCATGATTGTAGAGATACATTGAGGTTTATTTTATATTATACCATTTGGGAGGATTGGTTCATATGCTATGATTCTATAAAGATCAACTATCTAGAATGTTAAGGTTCTATGGGTTTCGAGATAATTAAAATATTGTAGAGTTGGTCATTCATGAGATTGATCGTTCATTGTCATTAGCCACCTCCTAGTACACCTAAGTATTTTGCTTATATTATTATTGTACATTCTCATATTTTGATGGTATATATGCAAATATTGAAATGAATATGGAAGCTGTCCACCAAGTTGGGATGAAGTATTTAATTAGGGTATTAACTCCGAAGTTTCCTAACAGCATTACTCGTAGTCATTTTA

mRNA sequence

ATGGGGAGAGAGGTAGCAGAGAGTTGCGTTGACAGTCTTTTGACGGAAATGGTTTCCACTTATTGCCATCGATTCTACGCCAATAAGCCGGAGCTAGCCGCCCGTCGCATCGAGGCAATTGGTTATCAGGTTGGCCATCAGCTCTCCGAACGCTTTGTTTTCACTAGGTATACGATGGAGCGGCCTCGGTTCACGGATCATCTTGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCCGAACTCTTCAAAAAGCAAATAGACAACTTGAAAACAAATCATAGGGGCACCTTTGTCTTGCAAGATAATCGATTCCGCTGGCTTACTCGCATGTCGGTGGATCCTCAAAATGAATCACAAGATAATTCTGCAGATGGTGAAAACAAGGTAGCTCAAGCAACAAGCATGCATCTATATTTCCCATGCGGAATCATAAGAGGTGCTCTTTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTTCCAGCATGTTCATTTGTTGTTCGTATAAAGGCCTGA

Coding sequence (CDS)

ATGGGGAGAGAGGTAGCAGAGAGTTGCGTTGACAGTCTTTTGACGGAAATGGTTTCCACTTATTGCCATCGATTCTACGCCAATAAGCCGGAGCTAGCCGCCCGTCGCATCGAGGCAATTGGTTATCAGGTTGGCCATCAGCTCTCCGAACGCTTTGTTTTCACTAGGTATACGATGGAGCGGCCTCGGTTCACGGATCATCTTGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCCGAACTCTTCAAAAAGCAAATAGACAACTTGAAAACAAATCATAGGGGCACCTTTGTCTTGCAAGATAATCGATTCCGCTGGCTTACTCGCATGTCGGTGGATCCTCAAAATGAATCACAAGATAATTCTGCAGATGGTGAAAACAAGGTAGCTCAAGCAACAAGCATGCATCTATATTTCCCATGCGGAATCATAAGAGGTGCTCTTTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTTCCAGCATGTTCATTTGTTGTTCGTATAAAGGCCTGA

Protein sequence

MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA

Homology

[Close]

BLAST of CsaV3_1G039430 vs. NCBI nr
Match: XP_008450727.1 (PREDICTED: trafficking protein particle complex subunit 6B isoform X1 [Cucumis melo])

HSP 1 Score: 356.3 bits (913), Expect = 6.0e-95
Identity = 174/176 (98.86%), Postives = 174/176 (98.86%), Query Frame = 0


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVF RYTME
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVF-RYTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ 120
           RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ
Sbjct: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ 120

Query: 121 DNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 177
           DNSADGENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 DNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 175

[Close]

BLAST of CsaV3_1G039430 vs. NCBI nr
Match: XP_004135644.1 (PREDICTED: trafficking protein particle complex subunit 6B [Cucumis sativus] >KGN66131.1 hypothetical protein Csa_1G573010 [Cucumis sativus])

HSP 1 Score: 348.6 bits (893), Expect = 1.3e-92
Identity = 171/176 (97.16%), Postives = 171/176 (97.16%), Query Frame = 0


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSE     RYTME
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSE-----RYTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ 120
           RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ
Sbjct: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ 120

Query: 121 DNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 177
           DNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 DNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 171

[Close]

BLAST of CsaV3_1G039430 vs. NCBI nr
Match: XP_008450728.1 (PREDICTED: trafficking protein particle complex subunit 6B isoform X2 [Cucumis melo])

HSP 1 Score: 347.1 bits (889), Expect = 3.6e-92
Identity = 170/176 (96.59%), Postives = 170/176 (96.59%), Query Frame = 0


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSE     RYTME
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSE-----RYTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ 120
           RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ
Sbjct: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ 120

Query: 121 DNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 177
           DNSADGENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 DNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 171

[Close]

BLAST of CsaV3_1G039430 vs. NCBI nr
Match: XP_023545328.1 (trafficking protein particle complex subunit 6B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 336.3 bits (861), Expect = 6.4e-89
Identity = 167/176 (94.89%), Postives = 169/176 (96.02%), Query Frame = 0


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREV+ESCVDSLLTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSE     RYTME
Sbjct: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSE-----RYTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD-PQNES 120
           RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD PQ ES
Sbjct: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGES 120

Query: 121 QDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 176
           QDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
Sbjct: 121 QDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 171

[Close]

BLAST of CsaV3_1G039430 vs. NCBI nr
Match: XP_022961590.1 (trafficking protein particle complex subunit 6B [Cucurbita moschata] >XP_022968804.1 trafficking protein particle complex subunit 6B [Cucurbita maxima])

HSP 1 Score: 334.7 bits (857), Expect = 1.9e-88
Identity = 166/176 (94.32%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREV+ESCVDSLLTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSE     RYTME
Sbjct: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSE-----RYTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD-PQNES 120
           RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD PQ ES
Sbjct: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGES 120

Query: 121 QDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 176
           QDNSADGENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
Sbjct: 121 QDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 171

[Close]

BLAST of CsaV3_1G039430 vs. TAIR10
Match: AT3G05000.1 (Transport protein particle (TRAPP) component)

HSP 1 Score: 297.7 bits (761), Expect = 4.6e-81
Identity = 144/178 (80.90%), Postives = 160/178 (89.89%), Query Frame = 0


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREVAESCVD++L EMV+ Y  RFYANKPELAARRIEAIGYQVGHQLSE     RYTME
Sbjct: 1   MGREVAESCVDTMLMEMVAMYSGRFYANKPELAARRIEAIGYQVGHQLSE-----RYTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP--QNE 120
           RPRF+DHLEAIKFICKDFWSE+FKKQIDNLKTNHRGTFVLQDN+FRWL+R+S+DP  +NE
Sbjct: 61  RPRFSDHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNKFRWLSRVSIDPSSENE 120

Query: 121 SQDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 177
           +QD S  GE+K AQA SM+LYFPCGIIRG LSNLGIPCAVSADIS+LP CSFV+R+KA
Sbjct: 121 TQDPSTPGESKAAQAVSMYLYFPCGIIRGVLSNLGIPCAVSADISSLPTCSFVIRVKA 173

[Close]

BLAST of CsaV3_1G039430 vs. Swiss-Prot
Match: sp|Q32L78|TPC6B_BOVIN (Trafficking protein particle complex subunit 6B OS=Bos taurus OX=9913 GN=TRAPPC6B PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 9.3e-31
Identity = 68/140 (48.57%), Postives = 92/140 (65.71%), Query Frame = 0


Query: 36  RIEAIGYQVGHQLSERFVFTRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR 95
           ++E +G++VG  L ERF     T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+
Sbjct: 35  KLENMGFRVGQGLIERF-----TKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQ 94

Query: 96  GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIP 155
           G +VLQDN+FR LT+MS   Q               +  S +L F CG+IRG LSNLGI 
Sbjct: 95  GIYVLQDNKFRLLTQMSAGKQ-------------YLEHASKYLAFTCGLIRGGLSNLGIK 154

Query: 156 CAVSADISNLPACSFVVRIK 176
             V+A++S++PAC F V I+
Sbjct: 155 SIVTAEVSSMPACKFQVMIQ 156

[Close]

BLAST of CsaV3_1G039430 vs. Swiss-Prot
Match: sp|Q86SZ2|TPC6B_HUMAN (Trafficking protein particle complex subunit 6B OS=Homo sapiens OX=9606 GN=TRAPPC6B PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 9.3e-31
Identity = 68/140 (48.57%), Postives = 92/140 (65.71%), Query Frame = 0


Query: 36  RIEAIGYQVGHQLSERFVFTRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR 95
           ++E +G++VG  L ERF     T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+
Sbjct: 35  KLENMGFRVGQGLIERF-----TKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQ 94

Query: 96  GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIP 155
           G +VLQDN+FR LT+MS   Q               +  S +L F CG+IRG LSNLGI 
Sbjct: 95  GIYVLQDNKFRLLTQMSAGKQ-------------YLEHASKYLAFTCGLIRGGLSNLGIK 154

Query: 156 CAVSADISNLPACSFVVRIK 176
             V+A++S++PAC F V I+
Sbjct: 155 SIVTAEVSSMPACKFQVMIQ 156

[Close]

BLAST of CsaV3_1G039430 vs. Swiss-Prot
Match: sp|Q9D289|TPC6B_MOUSE (Trafficking protein particle complex subunit 6B OS=Mus musculus OX=10090 GN=Trappc6b PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.6e-30
Identity = 66/140 (47.14%), Postives = 92/140 (65.71%), Query Frame = 0


Query: 36  RIEAIGYQVGHQLSERFVFTRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR 95
           ++E++G++VG  L ERF     T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+
Sbjct: 35  KLESMGFRVGQGLIERF-----TKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQ 94

Query: 96  GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIP 155
           G +VLQDN+FR L ++S   Q               +  S +L F CG+IRG LSNLGI 
Sbjct: 95  GIYVLQDNKFRLLIQLSAGKQ-------------YLEHASKYLAFTCGLIRGGLSNLGIK 154

Query: 156 CAVSADISNLPACSFVVRIK 176
             V+A++S++PAC F V I+
Sbjct: 155 SIVTAEVSSMPACKFQVMIQ 156

[Close]

BLAST of CsaV3_1G039430 vs. Swiss-Prot
Match: sp|Q78XR0|TPC6A_MOUSE (Trafficking protein particle complex subunit 6A OS=Mus musculus OX=10090 GN=Trappc6a PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.1e-23
Identity = 54/139 (38.85%), Postives = 79/139 (56.83%), Query Frame = 0


Query: 37  IEAIGYQVGHQLSERFVFTRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRG 96
           +E +G++VG  L ER       +E P F + L+A+KF+C+D W+ +F+K +D L+TNH+G
Sbjct: 37  LEGLGFRVGQALGERL-----PLETPAFREELDALKFLCRDLWAAMFQKHMDGLRTNHQG 96

Query: 97  TFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPC 156
           T+VLQDN F  L  M   PQ               +     L F CG++ GAL  LG   
Sbjct: 97  TYVLQDNSFPLLVTMGSGPQ-------------YLEEAPKFLAFTCGLLCGALHTLGFQS 156

Query: 157 AVSADISNLPACSFVVRIK 176
            V+A +++LPAC F V I+
Sbjct: 157 LVTASVASLPACKFQVVIQ 157

[Close]

BLAST of CsaV3_1G039430 vs. Swiss-Prot
Match: sp|Q3T086|TPC6A_BOVIN (Trafficking protein particle complex subunit 6A OS=Bos taurus OX=9913 GN=TRAPPC6A PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.6e-22
Identity = 57/139 (41.01%), Postives = 80/139 (57.55%), Query Frame = 0


Query: 37  IEAIGYQVGHQLSERFVFTRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRG 96
           +E +G++VG  L ER        E   F + L+ +KF+CKD W  +F KQ+D+L+TNH+G
Sbjct: 37  LEGMGFRVGQALGERL-----PRETLTFREELDILKFLCKDLWVAVFHKQMDSLRTNHQG 96

Query: 97  TFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPC 156
           T+VLQDN F  L RM            A G   + +A    L F CG++RG LS LG+  
Sbjct: 97  TYVLQDNSFPLLVRM------------ASGLQYLEEAPKF-LAFTCGLLRGTLSTLGVKS 156

Query: 157 AVSADISNLPACSFVVRIK 176
            V+A ++ LPAC F V I+
Sbjct: 157 LVTASVAALPACKFQVVIQ 157

[Close]

BLAST of CsaV3_1G039430 vs. TrEMBL
Match: tr|A0A1S3BQW9|A0A1S3BQW9_CUCME (trafficking protein particle complex subunit 6B isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492220 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 4.0e-95
Identity = 174/176 (98.86%), Postives = 174/176 (98.86%), Query Frame = 0


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVF RYTME
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVF-RYTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ 120
           RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ
Sbjct: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ 120

Query: 121 DNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 177
           DNSADGENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 DNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 175

[Close]

BLAST of CsaV3_1G039430 vs. TrEMBL
Match: tr|A0A0A0M1M8|A0A0A0M1M8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573010 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 8.3e-93
Identity = 171/176 (97.16%), Postives = 171/176 (97.16%), Query Frame = 0


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSE     RYTME
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSE-----RYTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ 120
           RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ
Sbjct: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ 120

Query: 121 DNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 177
           DNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 DNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 171

[Close]

BLAST of CsaV3_1G039430 vs. TrEMBL
Match: tr|A0A1S3BP90|A0A1S3BP90_CUCME (trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492220 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 2.4e-92
Identity = 170/176 (96.59%), Postives = 170/176 (96.59%), Query Frame = 0


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSE     RYTME
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSE-----RYTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ 120
           RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ
Sbjct: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ 120

Query: 121 DNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 177
           DNSADGENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 DNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 171

[Close]

BLAST of CsaV3_1G039430 vs. TrEMBL
Match: tr|A5AGD5|A5AGD5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0030g00700 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 1.2e-80
Identity = 155/180 (86.11%), Postives = 164/180 (91.11%), Query Frame = 0


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREV+ESCV+SLLTEMVS+YC RFYA+KP+LAARRIEAIGYQVGHQLSE     RYTME
Sbjct: 1   MGREVSESCVESLLTEMVSSYCTRFYADKPDLAARRIEAIGYQVGHQLSE-----RYTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNE-- 120
           RPRF+DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDN+FRWL+RMSVDP  E  
Sbjct: 61  RPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNKFRWLSRMSVDPSPENT 120

Query: 121 --SQDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 177
             +QD S D ENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 GSAQDPSTD-ENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 174

[Close]

BLAST of CsaV3_1G039430 vs. TrEMBL
Match: tr|A0A2I4HTF8|A0A2I4HTF8_9ROSI (trafficking protein particle complex subunit 6B OS=Juglans regia OX=51240 GN=LOC109021284 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 1.2e-80
Identity = 155/181 (85.64%), Postives = 164/181 (90.61%), Query Frame = 0


Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREV+ESCVDSLLTEMVS+YC RFYANKPELAARRIEAIG+QVGHQLSE     RYTME
Sbjct: 1   MGREVSESCVDSLLTEMVSSYCDRFYANKPELAARRIEAIGFQVGHQLSE-----RYTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNE-- 120
           RPRF+D+LEAIKFICKDFWSELFKKQIDNLKTNH+GTFVLQDNRFRWL RMS+DP +E  
Sbjct: 61  RPRFSDNLEAIKFICKDFWSELFKKQIDNLKTNHKGTFVLQDNRFRWLARMSIDPSSEDG 120

Query: 121 --SQDNSAD-GENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 177
             SQDNSA   ENK  QATSMHLYFPCGIIRGALSNLGIPCAVSADIS+LPACSFVVRIK
Sbjct: 121 DLSQDNSAPVTENKATQATSMHLYFPCGIIRGALSNLGIPCAVSADISSLPACSFVVRIK 176

The following BLAST results are available for this feature:

BLAST of CsaV3_1G039430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450727.1	6.0e-95	98.86	PREDICTED: trafficking protein particle complex subunit 6B isoform X1 [Cucumis m...	[more]
XP_004135644.1	1.3e-92	97.16	PREDICTED: trafficking protein particle complex subunit 6B [Cucumis sativus] >KG...	[more]
XP_008450728.1	3.6e-92	96.59	PREDICTED: trafficking protein particle complex subunit 6B isoform X2 [Cucumis m...	[more]
XP_023545328.1	6.4e-89	94.89	trafficking protein particle complex subunit 6B [Cucurbita pepo subsp. pepo]	[more]
XP_022961590.1	1.9e-88	94.32	trafficking protein particle complex subunit 6B [Cucurbita moschata] >XP_0229688...	[more]

BLAST of CsaV3_1G039430 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05000.1	4.6e-81	80.90	Transport protein particle (TRAPP) component	[more]

BLAST of CsaV3_1G039430 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q32L78\|TPC6B_BOVIN	9.3e-31	48.57	Trafficking protein particle complex subunit 6B OS=Bos taurus OX=9913 GN=TRAPPC6...	[more]
sp\|Q86SZ2\|TPC6B_HUMAN	9.3e-31	48.57	Trafficking protein particle complex subunit 6B OS=Homo sapiens OX=9606 GN=TRAPP...	[more]
sp\|Q9D289\|TPC6B_MOUSE	4.6e-30	47.14	Trafficking protein particle complex subunit 6B OS=Mus musculus OX=10090 GN=Trap...	[more]
sp\|Q78XR0\|TPC6A_MOUSE	7.1e-23	38.85	Trafficking protein particle complex subunit 6A OS=Mus musculus OX=10090 GN=Trap...	[more]
sp\|Q3T086\|TPC6A_BOVIN	4.6e-22	41.01	Trafficking protein particle complex subunit 6A OS=Bos taurus OX=9913 GN=TRAPPC6...	[more]

BLAST of CsaV3_1G039430 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BQW9\|A0A1S3BQW9_CUCME	4.0e-95	98.86	trafficking protein particle complex subunit 6B isoform X1 OS=Cucumis melo OX=36...	[more]
tr\|A0A0A0M1M8\|A0A0A0M1M8_CUCSA	8.3e-93	97.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573010 PE=4 SV=1	[more]
tr\|A0A1S3BP90\|A0A1S3BP90_CUCME	2.4e-92	96.59	trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo OX=36...	[more]
tr\|A5AGD5\|A5AGD5_VITVI	1.2e-80	86.11	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0030g00700 PE=4 SV=...	[more]
tr\|A0A2I4HTF8\|A0A2I4HTF8_9ROSI	1.2e-80	85.64	trafficking protein particle complex subunit 6B OS=Juglans regia OX=51240 GN=LOC...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0043087	regulation of GTPase activity
GO:0048193	Golgi vesicle transport

Vocabulary: **INTERPRO**
Term	Definition
IPR024096	NO_sig/Golgi_transp_ligand-bd
IPR037992	TRAPPC6/Trs33
IPR007194	TRAPP_component

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0043087	regulation of GTPase activity
biological_process	GO:0048868	pollen tube development
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005801	cis-Golgi network
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0030008	TRAPP complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G039430.1	CsaV3_1G039430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.1380.20		coord: 3..176 e-value: 8.2E-59 score: 199.6
None	No IPR available	PANTHER	PTHR12817:SF0	TRAFFICKING PROTEIN PARTICLE COMPLEX 6B-LIKE	coord: 3..175
IPR007194	Transport protein particle (TRAPP) component	PFAM	PF04051	TRAPP	coord: 11..174 e-value: 3.3E-45 score: 153.3
IPR037992	TRAPP complex, Trs33 subunit	PANTHER	PTHR12817	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B	coord: 3..175
IPR037992	TRAPP complex, Trs33 subunit	CDD	cd14944	TRAPPC6A_Trs33	coord: 6..175 e-value: 5.1212E-79 score: 234.071
IPR024096	NO signalling/Golgi transport ligand-binding domain superfamily	SUPERFAMILY	SSF111126	Ligand-binding domain in the NO signalling and Golgi transport	coord: 4..175

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G039430	CSPI01G27110	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G039430	CmaCh10G011000	Cucurbita maxima (Rimu)	cmacucB0075
CsaV3_1G039430	CmoCh10G011770	Cucurbita moschata (Rifu)	cmocucB0064
CsaV3_1G039430	Cp4.1LG11g09240	Cucurbita pepo (Zucchini)	cpecucB0099
CsaV3_1G039430	CsGy1G026290	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G039430	Carg27085	Silver-seed gourd	carcucB0805
CsaV3_1G039430	Cla011303	Watermelon (97103) v1	cucwmB025
CsaV3_1G039430	MELO3C015368	Melon (DHL92) v3.5.1	cucmeB042
CsaV3_1G039430	ClCG03G016550	Watermelon (Charleston Gray)	cucwcgB050
CsaV3_1G039430	Lsi06G001770	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G039430	MELO3C015368.2	Melon (DHL92) v3.6.1	cucmedB039
CsaV3_1G039430	Cla97C03G066860	Watermelon (97103) v2	cucwmbB041
CsaV3_1G039430	Bhi02G001765	Wax gourd	cucwgoB113

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G039430	Cucumber (Gy14) v1	cgycucB446
CsaV3_1G039430	Cucurbita pepo (Zucchini)	cpecucB0438