Lsi06G001770 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G001770
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Trafficking protein particle complex subunit 6b, putative
Location	chr06 : 1908394 .. 1914261 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGAGAGGTATCAGAGAGTTGCGTTGACAGTCTATTGACGGAAATGGTTTCCACTTATTGCCATCGATTCTACGCCAATAAGCCGGAACTTGCCGCCCGTCGTATCGAGGCAATCGGCTATCAGGTTGGCCATCAGCTCTCCGAACGGTATTCCTCCACCGCACTTTCTACCCTTCTTTTTTGTTTCTCTGAATTGTCTGGGGTTTCTTTGTTGCTTACATTTTGATTTCCAGAGTTGGCTAATGGATCTCTGGTTGCTCTGTGACTCTGATTCAATTTCCCAATTCTTTTATCGTTACGTTTTCTATTTTAGTGAATGTGTATGTTTGAGAGATTTATAATTGAGAATGTGAAGAACAATAGTTGGGACTAGAATTGCGAGTTAGAAGTGTTCCCCCAACACCCCACCACTTAAAGGAAAAGGAAGTTTTGTGTAATTGAAAACATCTAGCATTCTGTACTGAAAGCTGGAAGACAAAAGGTTGAATATTGCTGAATAATAGAATTGTATATTTGATGTGGACCATTTTTTTGGGAAATGAAAGAAACTCAATAACCAAAAGAGTATTTAAAAAGGGTGTATGAGGTACTCCCTCAATGAGGTACTCCCTCAATGAGGTAATAATAGCCCTAAAATAACTTGGATCAAAGAATCTTTGTCTTGACTCTGGAGATGATGGGAGCCATAAACAGATTATAGGTATTGGTGTAGACAGAAACAGATTATAGGTCCTTCTTCATTGATCTCCAATTGGCATGATCTTTTGTATCTCACGTGTTGGCGATGGGAGCCCTTAAAGCTCTTTTATTTCATTTATTAATGTTGTTTATTTCTCCTCTAAAAAAATGTAGACTGTGGCCTCTTTGATCTTCCTTTGACGAATGGTAAGTTTACTTGATCTAATTGGAGGGTATGTGCCTAAATAGATCGATTTTTTTGTCCATAGAGTGGTTAGACTCTTTTATAGCATGACAATGGTTAGGCTCTTGAGTTACTTCTGATCAATTGTTGATGTAATTAGATTCAGGCATTTTGAAATGAGTTCTAACCCCGTTTAGATTTGAAATATGTGCCTGTTTCATCCTTCTTTTAGAGTCTATTTACCCTCTAGTGGACAGCGGAGGTCTTAGGGAGATGGGAAGATTATCGTTTTTGGGGAAGCTTTGTAGTTTGAGAGAGTCTCTTAAAATTTAGAATCGTAAAGTTTTTGGAGACTTGAAGATCAAAAAACAGGATTTACTAAATTGTATTACCATGCTGGATAGATCGGAGGAAGTGAGTTCCCTGAGCTTTGAACTGAGAGAGGAAAGTTTATCTCTGATAGTTGAGTTTGAAGAGGTGATTAAAAGTGAAACTATTAGCTAGAGGCAAAAGGCTAAATTTACATGGGCTAAGGACGGTGACAACAACGCAACTTACTTCCATAGGGTGGCTTGCGGAAGGAGTAGAAATGCTATTGACTCCCTAGTACGCAAAGATGGGAGAACTATACAAGAGGATAAGGAGATTGAAGAGGAGGTTCTCTCTATTTTCTCCCCTCTTGTTTAGATCACTATGAAGGTTTGCAATACCCGGGAGTAACTTATGCTTAACTTTGTATAGGGAGGGGTGGTGGAAGGGAAGGCTTCTCACTTGGTTAAGTTGGGAAGTTGTGACTAATCTGATGGAGCTTGGTGGCTTGGGTATAGGAATCTTAAGGTTCGAACAAGGCCTTGCTAGCTAAGTGGTTGTGGCATTTTCCTCGTGAGTCTAAAAGTTTATGGCCTAAGGTTATTATGAGCAAATACAATCCTTATCCTTTTACTTGGCTCATGAATAGGATGATGGGAGGAACTATTAGAAATCCTTGGAAAGCTATTTTAGACAGACTCCCTTTCTTTGCTCAATTTATTCATTGGATTGTGGGCAACGAGACGAGTACTTACTTTTGGGAAGACACGTGATTCGGGGATAGTCCTCTCTGCAAAGCCTTCCTTTGTCTTCGTCATTTGTCCAATGCAAAGTTTTTTGTGGCTTCCATCCTCCCATCTTTTAGAAACTCTTCCTTTATTGGAAAGCTACCCAATAAAATCTTCTTCACACCTATTTGGAAAATCACCAAGCTAAGTCAAGGTGACGAATGAAATTTAACTCTTGATTCTTGAGAGGAAAAGCTACAGAGGAGAGTAAGTTTACACATTGCTAAACCACACAAATTTGAGGAGAAAGAAGAGGTTTGGATGACCTTTCCAAACGGGTTTAGGTTGTTAAATACTGATGTCCAATGAAGTTCCATCATTGAGAGACAAAGCTGCAGTGGAAAAAAGGTTGTTGGAAATTTCCACATTGCTAAACAAGCAGACTTTATGAGAAAGAATTTGGTCTGTGGCCTTCCCGATAAGCTTGAGCTAGATCCAAGAAAAATCCTGCTTGATTGAATGGCTTTTTCTTAGCTTATTTGATTGAAAACAACTGGATCTTTCAAGAGTCCATATTTTAGGGATTGCGGAAGCATAATAAAGGAGCATCTAGAAATTTTCCCATTCTTCTAACTCTGTCAATTAGGCTGCCTCTAATAAGTAAATTTTAAGCTTTGTTGTCTTTGCACCAGCACCCAAAAAAAGTTAAGAGTTAGCAATTACTCTAAAACCAAAGGGAAATTCTCTGAAACAAATCTGATGAAAACTAAGAAGCAATAAACAAAGCATCAACCTATAAATTTCTTTAAAAAGTAGGACAAGAATTAAGGAGCATGGACACTGACACGCGACACGAATACGACACGACACTGACACGGCGACACGTCAATTTACAAGAAAGTAGGACACGACACGTTGGGGACACATTATTTATCTTTACAAAAATAAATATATGTGTGCATAATTTGACATATTGTGAGATATGGGCACATATATTTAACAAAAAGTAAGAGAAAAACATAAACGAAAAAAAAAAAGGAAAGTAAAGATAAAAACAGAAGGAAAAAAAACAGTAAGAGAAGTCACATAAGTTGTCGGCCGTTGTGGGTCTTGAAGTTGAAGTCACCGTCGTCGATGAAGTTAAGAAAGAAGAATTAAGTAGCATAGTGGGTTTATTATTTTTTTAAAAAAAAAATTGTGGGTTAAGTTTTGAGGCTGAAGTGTGTGAGTACGGAGAAAGTGTGTAAAAACTCTAGAATTTTGAAAAAGTTGGGTTGAACAGTTAATTTTAATTAGCTTAAAATCCCCCTTAAATGGGCTACCGATAGTGGTTCTTGTTTCATTATTTTTTTTAAAAAAAATTTGCATATGGAGTGTCCTTGTCGTGTCGCTAGCGTGTCCTGACGTGTCGGAAAGCAAACAAATAATAATAAAATAATGGACACGCCAACTGGCGTGTCGAACACATGTCGGTGTCCGACACTGACACTTCGCCAGTTTAGAAGTGTTGGTGCTTTATATGAATAAATATGTGACACACTTCTTTTATAGAACATTTGTTTATATATTGATATATCAAATACTTCAAAATAGATAGAAGTTTAGAACATGTATATTTAACATAAAACAAATATTAGGGTGGGGTGTTTGGGTACAAAGTTCAGGGACCAAGATCTTTTTTGTAAAGTATCATTGTCTGGGTATACAGGTCAAATACTAATATGTCATGGTATGCAAAGATGACTATTCCAATGTATGATGGACTAGGTTATTATGATAAGAGATTTATTAGTAAGTCAAGATCTAATTGCTAGTTAGTGGAAATTTTAACCTTCTACATAGAGGCAAGCCTCTTACGAACCTTACCATCAGGGCCCCAGAACATATTTGAGACAACCTTGAGAGCTCAAGAACTTATATTGTTTCAAATTGACGAACCTATTGGGTACAACTATGAAAGTTATAGGACTAAACTTACTAAGCTAGATTTATGAAATTGTGTGACTTATGGATTTATAGTTAGAAAGTATGAATTGAACTTGAAAAATACTTAGTAATGTTTCCACTTAAAAACCAGAAAAGTTGGGGCATTGTACGTGTTGTGATCATGGGACTGAGGGTAATGATCATGTGTTTATGAGGTGATCCAAGTTGGTATGTTTGCAGGTGACTTTGAAATCCTTGTTCAGGTCTATTTTAAAGGGTAGGGGCTGAGTGTCTTAATTGAGCTGAATCCATTGGAGGGTGAAGGGAGATGTGAATTTTTTGTGTACTGATGTATTGGAGGAAATCTAACAAGGCTTGAATAGATTTGCCTCGGTTTTTAAACCTTTTATGTCACCTTCATCACAGGACTAGTAGCACATATTGCATTGTTACTAACTAGATATGTCTTGTATGACTCCTATTGTTGTCCACCATTTCAAAAGGATGAAATTGAGTGGTTGTTTTATGGAATGTTATTAACTGGGATTGTTCAATTCAGCTCTAGATTGTTTTCAAGCCGCGTTTTATTGATTAAGAGAATACTTTCATTTTTATGTTGGTTATAAAGCTTTAAATTGAGTAATGATTCCAAACAAATATCTCATTTGAGTTGCGGATGTGTTGCTAGATGAACTGTGTATGCTGGCAGTATCTTTTCCAAAATCAATTTGAAGGGTACCCCTGATTATGCTATTACTAGAGGATATTTGTAGTAATGCCGTAAAGGTTGAGTAATATTCCCTTAACTTTGCAATCTGTGATGAATAATGTCCTTTGGCCCTTCTTACAGGTTGTCTTGTTCAGGTTTATAGTGTCGTTTTGAAGGATCGTTTGAGCTTCTTGCAGCAGTTCTTCAGGTGCTTCGGGAGCATCAGTTAGTTACTAAAATGTGTCAGCTTGCATTGTCCCACATCTTGTATTTGGCCATGTAGTGTTAGCTTAACTGAAGAAGTTGCCTCTAATCCTTTCTACATTTGCTGCAAAGGATCAATGGCATGTAAACCCAAAAATTTGGAGTTATGCGGATTCTAGGCCAGTACGATACGTTTTTTTTTTTTTTGTCAATTCTGAAATTGGGGGTTGCCACGGGCATAATACTGCCAGAATCTTGCCCAACAATGTGACTGTAGGGGAATAGAGCAGTTGCGAGCAAGAGAGGTTTACATTAGATGTGAAAATGGGAGGGTATGCTTTGGTAGGAAAGTAGAAACCGGGAGAGCATGGGAACTCTGATCTTTCCCTAGTGACGTTTGTTTCCCTGTTTAGCTTGTATTTGATCTCAAGTAAAATTTTCTGCTGAGAGTTTCTATACATTATGACTTAGCTTCCATTTTTCCTTGCCCATTTTATGGCTTCTTATTCATGGTACTTGATGATTAAATACTGCAACTTAACTGTTTGCTTTGTTTCCAATAGATATACGATGGAGCGGCCTCGGTTCACTGATCATCTTGAAGCAATCAAATTTATCTGCAAAGACTTCTGGTCTGAACTCTTCAAAAAGCAGATAGACAACTTGAAAACAAATCATAGAGTAAGATCAAAAGCCAAACCTAGGAGCAGCCCTTTCTTTTTCCTGTGTACTTTACTTTATCGTACATGAACTTGGCCTAAATTCGGAAAATTGTTTTGATTCCCAGGGCACCTTTGTTTTGCAAGATAATCGATTCCGCTGGCTTACACGTATGTCAGTGGATCCTCAAAGTGAATCACAGGATAATTCTGCAGATGGTGAAAACAAGGCAGCTCAAGCAACAAGCATGCATCTATATTTCCCATGTGGAATCATAAGGGGTGCTCTCTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTTCCAGCATGTAAGTAATCAAACTTCAATCATTATCCTCACTTTCCTTCTAGGTTTGAAAAATGAGAATGACCTGCTGACATCGCTTGTGTTATGAAATAGGTTCATTTGTTGTTCGTATAAAGGCCTGA

mRNA sequence

ATGGGGAGAGAGGTATCAGAGAGTTGCGTTGACAGTCTATTGACGGAAATGGTTTCCACTTATTGCCATCGATTCTACGCCAATAAGCCGGAACTTGCCGCCCGTCGTATCGAGGCAATCGGCTATCAGGTTGGCCATCAGCTCTCCGAACGGTCAAATACTAATATGTCATGGTATGCAAAGATGACTATTCCAATGTATGATGGACTAGGGCCCCAGAACATATTTGAGACAACCTTGAGAGCTCAAGAACTTATATTGTTTCAAATTGACGAACCTATTGGATATACGATGGAGCGGCCTCGGTTCACTGATCATCTTGAAGCAATCAAATTTATCTGCAAAGACTTCTGGTCTGAACTCTTCAAAAAGCAGATAGACAACTTGAAAACAAATCATAGAGGCACCTTTGTTTTGCAAGATAATCGATTCCGCTGGCTTACACGTATGTCAGTGGATCCTCAAAGTGAATCACAGGATAATTCTGCAGATGGTGAAAACAAGGCAGCTCAAGCAACAAGCATGCATCTATATTTCCCATGTGGAATCATAAGGGGTGCTCTCTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTTCCAGCATGTTCATTTGTTGTTCGTATAAAGGCCTGA

Coding sequence (CDS)

ATGGGGAGAGAGGTATCAGAGAGTTGCGTTGACAGTCTATTGACGGAAATGGTTTCCACTTATTGCCATCGATTCTACGCCAATAAGCCGGAACTTGCCGCCCGTCGTATCGAGGCAATCGGCTATCAGGTTGGCCATCAGCTCTCCGAACGGTCAAATACTAATATGTCATGGTATGCAAAGATGACTATTCCAATGTATGATGGACTAGGGCCCCAGAACATATTTGAGACAACCTTGAGAGCTCAAGAACTTATATTGTTTCAAATTGACGAACCTATTGGATATACGATGGAGCGGCCTCGGTTCACTGATCATCTTGAAGCAATCAAATTTATCTGCAAAGACTTCTGGTCTGAACTCTTCAAAAAGCAGATAGACAACTTGAAAACAAATCATAGAGGCACCTTTGTTTTGCAAGATAATCGATTCCGCTGGCTTACACGTATGTCAGTGGATCCTCAAAGTGAATCACAGGATAATTCTGCAGATGGTGAAAACAAGGCAGCTCAAGCAACAAGCATGCATCTATATTTCCCATGTGGAATCATAAGGGGTGCTCTCTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTTCCAGCATGTTCATTTGTTGTTCGTATAAAGGCCTGA

Protein sequence

MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERSNTNMSWYAKMTIPMYDGLGPQNIFETTLRAQELILFQIDEPIGYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA

Homology

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BLAST of Lsi06G001770 vs. Swiss-Prot
Match: TPC6B_BOVIN (Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.4e-27
Identity = 60/119 (50.42%), Postives = 80/119 (67.23%), Query Frame = 1


Query: 96  YTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQ 155
           +T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR LT+MS   Q
Sbjct: 51  FTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQ 110

Query: 156 SESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 215
                          +  S +L F CG+IRG LSNLGI   V+A++S++PAC F V I+
Sbjct: 111 -------------YLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156

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BLAST of Lsi06G001770 vs. Swiss-Prot
Match: TPC6B_HUMAN (Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.4e-27
Identity = 60/119 (50.42%), Postives = 80/119 (67.23%), Query Frame = 1


Query: 96  YTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQ 155
           +T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR LT+MS   Q
Sbjct: 51  FTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQ 110

Query: 156 SESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 215
                          +  S +L F CG+IRG LSNLGI   V+A++S++PAC F V I+
Sbjct: 111 -------------YLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156

[Close]

BLAST of Lsi06G001770 vs. Swiss-Prot
Match: TPC6B_MOUSE (Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.7e-26
Identity = 58/119 (48.74%), Postives = 79/119 (66.39%), Query Frame = 1


Query: 96  YTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQ 155
           +T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L ++S   Q
Sbjct: 51  FTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLSAGKQ 110

Query: 156 SESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 215
                          +  S +L F CG+IRG LSNLGI   V+A++S++PAC F V I+
Sbjct: 111 -------------YLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156

[Close]

BLAST of Lsi06G001770 vs. Swiss-Prot
Match: TPC6A_BOVIN (Trafficking protein particle complex subunit 6A OS=Bos taurus GN=TRAPPC6A PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.0e-20
Identity = 55/140 (39.29%), Postives = 81/140 (57.86%), Query Frame = 1


Query: 77  ETTLRAQELILFQIDEPIGYTMERPRFT--DHLEAIKFICKDFWSELFKKQIDNLKTNHR 136
           +T+L   E + F++ + +G  + R   T  + L+ +KF+CKD W  +F KQ+D+L+TNH+
Sbjct: 31  KTSLLVLEGMGFRVGQALGERLPRETLTFREELDILKFLCKDLWVAVFHKQMDSLRTNHQ 90

Query: 137 GTFVLQDNRFRWLTRMSVDPQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIP 196
           GT+VLQDN F  L RM            A G     +A    L F CG++RG LS LG+ 
Sbjct: 91  GTYVLQDNSFPLLVRM------------ASGLQYLEEAPKF-LAFTCGLLRGTLSTLGVK 150

Query: 197 CAVSADISNLPACSFVVRIK 215
             V+A ++ LPAC F V I+
Sbjct: 151 SLVTASVAALPACKFQVVIQ 157

[Close]

BLAST of Lsi06G001770 vs. Swiss-Prot
Match: TPC6A_MOUSE (Trafficking protein particle complex subunit 6A OS=Mus musculus GN=Trappc6a PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.0e-20
Identity = 51/138 (36.96%), Postives = 78/138 (56.52%), Query Frame = 1


Query: 79  TLRAQELILFQIDEPIG--YTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGT 138
           +L   E + F++ + +G    +E P F + L+A+KF+C+D W+ +F+K +D L+TNH+GT
Sbjct: 33  SLSVLEGLGFRVGQALGERLPLETPAFREELDALKFLCRDLWAAMFQKHMDGLRTNHQGT 92

Query: 139 FVLQDNRFRWLTRMSVDPQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA 198
           +VLQDN F  L  M   PQ               +     L F CG++ GAL  LG    
Sbjct: 93  YVLQDNSFPLLVTMGSGPQ-------------YLEEAPKFLAFTCGLLCGALHTLGFQSL 152

Query: 199 VSADISNLPACSFVVRIK 215
           V+A +++LPAC F V I+
Sbjct: 153 VTASVASLPACKFQVVIQ 157

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BLAST of Lsi06G001770 vs. TrEMBL
Match: A0A0L9VDA4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g157100 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 5.7e-74
Identity = 153/230 (66.52%), Postives = 170/230 (73.91%), Query Frame = 1


Query: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERSNTNM---- 60
           M REVSESCVDSLLTEMV+ YC+RFYANKPELAARRIEAIGYQVGHQLSER         
Sbjct: 1   MVREVSESCVDSLLTEMVACYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  -----------SWYAKMTIPMYDGLGPQNIFETTLRAQEL--ILFQID--EPIGYTMERP 120
                       +++++     D L   +   + L A  L   L  +D  + +GYTMERP
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRIISRLIAYLLGKPLTSLDGGDNLGYTMERP 120

Query: 121 RFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQSES--- 180
           RFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDN+FRWL RMSVDP +++   
Sbjct: 121 RFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNKFRWLARMSVDPSTDNAGS 180

Query: 181 --QDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPA 207
              +NS   ENKAA A SMHLYFPCGIIRGALSNLGIPCAVSADISNLPA
Sbjct: 181 VEDNNSPTAENKAAHAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPA 230

[Close]

BLAST of Lsi06G001770 vs. TrEMBL
Match: V4M3W8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021604mg PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 8.2e-73
Identity = 146/217 (67.28%), Postives = 167/217 (76.96%), Query Frame = 1


Query: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERSNTNMSWYA 60
           M REV+ESCVD++L EMV+ Y  RFYANKPELAARRIEAIGYQVGHQLSER         
Sbjct: 1   MVREVAESCVDTMLMEMVAMYSGRFYANKPELAARRIEAIGYQVGHQLSERF-------- 60

Query: 61  KMTIPMYDGLGPQNIFETTLRAQELILFQIDEPIGYTMERPRFTDHLEAIKFICKDFWSE 120
              +P+Y                 +I+F       YTMERPRF+DHLEAIKFICKDFWSE
Sbjct: 61  ---VPVY----------------LIIVFS-----RYTMERPRFSDHLEAIKFICKDFWSE 120

Query: 121 LFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQS--ESQDNSADGENKAAQATSMHLY 180
           +FKKQIDNLKTNHRGTFVLQDN+FRWL+R+S+DP S  E++D S  GE+KAAQA SM+LY
Sbjct: 121 VFKKQIDNLKTNHRGTFVLQDNKFRWLSRVSIDPSSEKETEDPSTPGESKAAQAVSMYLY 180

Query: 181 FPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 216
           FPCGIIRG LSNLGIPCAVSADIS+LP CSFV+R+KA
Sbjct: 181 FPCGIIRGVLSNLGIPCAVSADISSLPTCSFVIRVKA 185

[Close]

BLAST of Lsi06G001770 vs. TrEMBL
Match: A0A0A0M1M8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573010 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 2.0e-63
Identity = 123/141 (87.23%), Postives = 127/141 (90.07%), Query Frame = 1


Query: 77  ETTLRAQELILFQIDEPIG--YTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR 136
           E   R  E I +Q+   +   YTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR
Sbjct: 31  ELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR 90

Query: 137 GTFVLQDNRFRWLTRMSVDPQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIP 196
           GTFVLQDNRFRWLTRMSVDPQ+ESQDNSADGENK AQATSMHLYFPCGIIRGALSNLGIP
Sbjct: 91  GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIP 150

Query: 197 CAVSADISNLPACSFVVRIKA 216
           CAVSADISNLPACSFVVRIKA
Sbjct: 151 CAVSADISNLPACSFVVRIKA 171

[Close]

BLAST of Lsi06G001770 vs. TrEMBL
Match: M8BX49_AEGTA (Uncharacterized protein OS=Aegilops tauschii GN=F775_32428 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.4e-59
Identity = 129/213 (60.56%), Postives = 143/213 (67.14%), Query Frame = 1


Query: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERSNTNMSWYA 60
           MGREVSESCVD ++ EMV+ YC RFYA KPELAA R+  +G                   
Sbjct: 1   MGREVSESCVDGVVMEMVAAYCGRFYAAKPELAAGRMSGLGLP----------------- 60

Query: 61  KMTIPMYDGLGPQNIFETTLRAQELILFQIDEPIG--YTMERPRFTDHLEAIKFICKDFW 120
                     GP    E      E I FQ+   +   YTMERPRFTDHLEAIKFICKDFW
Sbjct: 61  ----------GP----ELAAGRIEAIGFQVGHQLSERYTMERPRFTDHLEAIKFICKDFW 120

Query: 121 SELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQSESQD----NSADGENKAAQATS 180
           SELFKKQIDNLKTNHRGTFVLQDN FRWLTR+S+DP  ES D    +S    + AAQ TS
Sbjct: 121 SELFKKQIDNLKTNHRGTFVLQDNHFRWLTRVSLDPAVESTDATENDSGSLGDSAAQTTS 180

Query: 181 MHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 208
           M LYFPCG+IRGAL+NLGIPCAVSAD+SNLPAC
Sbjct: 181 MLLYFPCGLIRGALTNLGIPCAVSADMSNLPAC 182

[Close]

BLAST of Lsi06G001770 vs. TrEMBL
Match: M1CMT7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027544 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 4.1e-56
Identity = 114/145 (78.62%), Postives = 121/145 (83.45%), Query Frame = 1


Query: 77  ETTLRAQELILFQIDEPIG--YTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR 136
           E   R  E I FQ+   +   YTM+RPRFTDHLEAIKFICKDFWSE+FKKQIDNLKTNHR
Sbjct: 31  ELAARRIEAIGFQVGHQLSERYTMDRPRFTDHLEAIKFICKDFWSEVFKKQIDNLKTNHR 90

Query: 137 GTFVLQDNRFRWLTRMSVDPQSES----QDNSADGENKAAQATSMHLYFPCGIIRGALSN 196
           GTFVLQDNRFRWL+RMSVDP  E+    QD SA  ENKAAQA  MHLYFPCGIIRGALSN
Sbjct: 91  GTFVLQDNRFRWLSRMSVDPSIETLGSIQDPSAMAENKAAQAIGMHLYFPCGIIRGALSN 150

Query: 197 LGIPCAVSADISNLPACSFVVRIKA 216
           LGIPCAVSADISNLPACSFV+RIKA
Sbjct: 151 LGIPCAVSADISNLPACSFVIRIKA 175

[Close]

BLAST of Lsi06G001770 vs. TAIR10
Match: AT3G05000.1 (AT3G05000.1 Transport protein particle (TRAPP) component)

HSP 1 Score: 223.0 bits (567), Expect = 1.8e-58
Identity = 110/156 (70.51%), Postives = 126/156 (80.77%), Query Frame = 1


Query: 64  IPMYDGLGPQNIFETTLRAQELILFQIDEPIG--YTMERPRFTDHLEAIKFICKDFWSEL 123
           + MY G    N  E   R  E I +Q+   +   YTMERPRF+DHLEAIKFICKDFWSE+
Sbjct: 18  VAMYSGRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSEV 77

Query: 124 FKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQS--ESQDNSADGENKAAQATSMHLYF 183
           FKKQIDNLKTNHRGTFVLQDN+FRWL+R+S+DP S  E+QD S  GE+KAAQA SM+LYF
Sbjct: 78  FKKQIDNLKTNHRGTFVLQDNKFRWLSRVSIDPSSENETQDPSTPGESKAAQAVSMYLYF 137

Query: 184 PCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 216
           PCGIIRG LSNLGIPCAVSADIS+LP CSFV+R+KA
Sbjct: 138 PCGIIRGVLSNLGIPCAVSADISSLPTCSFVIRVKA 173

[Close]

BLAST of Lsi06G001770 vs. NCBI nr
Match: gi|920711663|gb|KOM52912.1| (hypothetical protein LR48_Vigan09g157100 [Vigna angularis])

HSP 1 Score: 285.4 bits (729), Expect = 8.1e-74
Identity = 153/230 (66.52%), Postives = 170/230 (73.91%), Query Frame = 1


Query: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERSNTNM---- 60
           M REVSESCVDSLLTEMV+ YC+RFYANKPELAARRIEAIGYQVGHQLSER         
Sbjct: 1   MVREVSESCVDSLLTEMVACYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  -----------SWYAKMTIPMYDGLGPQNIFETTLRAQEL--ILFQID--EPIGYTMERP 120
                       +++++     D L   +   + L A  L   L  +D  + +GYTMERP
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRIISRLIAYLLGKPLTSLDGGDNLGYTMERP 120

Query: 121 RFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQSES--- 180
           RFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDN+FRWL RMSVDP +++   
Sbjct: 121 RFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNKFRWLARMSVDPSTDNAGS 180

Query: 181 --QDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPA 207
              +NS   ENKAA A SMHLYFPCGIIRGALSNLGIPCAVSADISNLPA
Sbjct: 181 VEDNNSPTAENKAAHAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPA 230

[Close]

BLAST of Lsi06G001770 vs. NCBI nr
Match: gi|659099687|ref|XP_008450727.1| (PREDICTED: trafficking protein particle complex subunit 6B isoform X1 [Cucumis melo])

HSP 1 Score: 283.9 bits (725), Expect = 2.4e-73
Identity = 153/215 (71.16%), Postives = 159/215 (73.95%), Query Frame = 1


Query: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERSNTNMSWYA 60
           MGREV+ESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSER         
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERF-------- 60

Query: 61  KMTIPMYDGLGPQNIFETTLRAQELILFQIDEPIGYTMERPRFTDHLEAIKFICKDFWSE 120
                         +F  T+                 +E  +F            DFWSE
Sbjct: 61  --------------VFRYTMERPRFT---------DHLEAIKFICK---------DFWSE 120

Query: 121 LFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQSESQDNSADGENKAAQATSMHLYFP 180
           LFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQ+ESQDNSADGENKAAQATSMHLYFP
Sbjct: 121 LFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKAAQATSMHLYFP 175

Query: 181 CGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 216
           CGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 181 CGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 175

[Close]

BLAST of Lsi06G001770 vs. NCBI nr
Match: gi|567203008|ref|XP_006408124.1| (hypothetical protein EUTSA_v10021604mg [Eutrema salsugineum])

HSP 1 Score: 281.6 bits (719), Expect = 1.2e-72
Identity = 146/217 (67.28%), Postives = 167/217 (76.96%), Query Frame = 1


Query: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERSNTNMSWYA 60
           M REV+ESCVD++L EMV+ Y  RFYANKPELAARRIEAIGYQVGHQLSER         
Sbjct: 1   MVREVAESCVDTMLMEMVAMYSGRFYANKPELAARRIEAIGYQVGHQLSERF-------- 60

Query: 61  KMTIPMYDGLGPQNIFETTLRAQELILFQIDEPIGYTMERPRFTDHLEAIKFICKDFWSE 120
              +P+Y                 +I+F       YTMERPRF+DHLEAIKFICKDFWSE
Sbjct: 61  ---VPVY----------------LIIVFS-----RYTMERPRFSDHLEAIKFICKDFWSE 120

Query: 121 LFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQS--ESQDNSADGENKAAQATSMHLY 180
           +FKKQIDNLKTNHRGTFVLQDN+FRWL+R+S+DP S  E++D S  GE+KAAQA SM+LY
Sbjct: 121 VFKKQIDNLKTNHRGTFVLQDNKFRWLSRVSIDPSSEKETEDPSTPGESKAAQAVSMYLY 180

Query: 181 FPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 216
           FPCGIIRG LSNLGIPCAVSADIS+LP CSFV+R+KA
Sbjct: 181 FPCGIIRGVLSNLGIPCAVSADISSLPTCSFVIRVKA 185

[Close]

BLAST of Lsi06G001770 vs. NCBI nr
Match: gi|659099689|ref|XP_008450728.1| (PREDICTED: trafficking protein particle complex subunit 6B isoform X2 [Cucumis melo])

HSP 1 Score: 251.9 bits (642), Expect = 1.0e-63
Identity = 124/141 (87.94%), Postives = 128/141 (90.78%), Query Frame = 1


Query: 77  ETTLRAQELILFQIDEPIG--YTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR 136
           E   R  E I +Q+   +   YTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR
Sbjct: 31  ELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR 90

Query: 137 GTFVLQDNRFRWLTRMSVDPQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIP 196
           GTFVLQDNRFRWLTRMSVDPQ+ESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIP
Sbjct: 91  GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIP 150

Query: 197 CAVSADISNLPACSFVVRIKA 216
           CAVSADISNLPACSFVVRIKA
Sbjct: 151 CAVSADISNLPACSFVVRIKA 171

[Close]

BLAST of Lsi06G001770 vs. NCBI nr
Match: gi|449435724|ref|XP_004135644.1| (PREDICTED: trafficking protein particle complex subunit 6B [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 2.9e-63
Identity = 123/141 (87.23%), Postives = 127/141 (90.07%), Query Frame = 1


Query: 77  ETTLRAQELILFQIDEPIG--YTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR 136
           E   R  E I +Q+   +   YTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR
Sbjct: 31  ELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR 90

Query: 137 GTFVLQDNRFRWLTRMSVDPQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIP 196
           GTFVLQDNRFRWLTRMSVDPQ+ESQDNSADGENK AQATSMHLYFPCGIIRGALSNLGIP
Sbjct: 91  GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIP 150

Query: 197 CAVSADISNLPACSFVVRIKA 216
           CAVSADISNLPACSFVVRIKA
Sbjct: 151 CAVSADISNLPACSFVVRIKA 171

The following BLAST results are available for this feature:

BLAST of Lsi06G001770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TPC6B_BOVIN	3.4e-27	50.42	Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 S...	[more]
TPC6B_HUMAN	3.4e-27	50.42	Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1...	[more]
TPC6B_MOUSE	3.7e-26	48.74	Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=1...	[more]
TPC6A_BOVIN	3.0e-20	39.29	Trafficking protein particle complex subunit 6A OS=Bos taurus GN=TRAPPC6A PE=2 S...	[more]
TPC6A_MOUSE	4.0e-20	36.96	Trafficking protein particle complex subunit 6A OS=Mus musculus GN=Trappc6a PE=1...	[more]

BLAST of Lsi06G001770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0L9VDA4_PHAAN	5.7e-74	66.52	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g157100 PE=4 SV=1	[more]
V4M3W8_EUTSA	8.2e-73	67.28	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021604mg PE=4 SV=1	[more]
A0A0A0M1M8_CUCSA	2.0e-63	87.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573010 PE=4 SV=1	[more]
M8BX49_AEGTA	1.4e-59	60.56	Uncharacterized protein OS=Aegilops tauschii GN=F775_32428 PE=4 SV=1	[more]
M1CMT7_SOLTU	4.1e-56	78.62	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027544 PE=4 SV=1	[more]

BLAST of Lsi06G001770 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05000.1	1.8e-58	70.51	Transport protein particle (TRAPP) component	[more]

BLAST of Lsi06G001770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|920711663\|gb\|KOM52912.1\|	8.1e-74	66.52	hypothetical protein LR48_Vigan09g157100 [Vigna angularis]	[more]
gi\|659099687\|ref\|XP_008450727.1\|	2.4e-73	71.16	PREDICTED: trafficking protein particle complex subunit 6B isoform X1 [Cucumis m...	[more]
gi\|567203008\|ref\|XP_006408124.1\|	1.2e-72	67.28	hypothetical protein EUTSA_v10021604mg [Eutrema salsugineum]	[more]
gi\|659099689\|ref\|XP_008450728.1\|	1.0e-63	87.94	PREDICTED: trafficking protein particle complex subunit 6B isoform X2 [Cucumis m...	[more]
gi\|449435724\|ref\|XP_004135644.1\|	2.9e-63	87.23	PREDICTED: trafficking protein particle complex subunit 6B [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR024096	NO_sig/Golgi_transp_ligand-bd
IPR007194	TRAPP_component

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0048868	pollen tube development
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0043087	regulation of GTPase activity
biological_process	GO:0048193	Golgi vesicle transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005801	cis-Golgi network
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0030008	TRAPP complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G001770.1	Lsi06G001770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007194	Transport protein particle (TRAPP) component	PFAM	PF04051	TRAPP	coord: 11..213 score: 5.4
IPR024096	NO signalling/Golgi transport ligand-binding domain	unknown	SSF111126	Ligand-binding domain in the NO signalling and Golgi transport	coord: 3..55 score: 1.31E-39coord: 97..214 score: 1.31
None	No IPR available	GENE3D	G3DSA:3.30.1380.20		coord: 4..55 score: 9.0E-17coord: 98..208 score: 9.0
None	No IPR available	PANTHER	PTHR12817	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B	coord: 104..215 score: 1.3E-86coord: 1..59 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G001770	Csa1G573010	Cucumber (Chinese Long) v2	culsiB058
Lsi06G001770	CSPI01G27110	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G001770	CmaCh10G011000	Cucurbita maxima (Rimu)	cmalsiB079
Lsi06G001770	CmoCh10G011770	Cucurbita moschata (Rifu)	cmolsiB066
Lsi06G001770	Cla011303	Watermelon (97103) v1	lsiwmB396
Lsi06G001770	MELO3C015368	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G001770	ClCG03G016550	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G001770	MELO3C015368.2	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G001770	Cla97C03G066860	Watermelon (97103) v2	lsiwmbB365
Lsi06G001770	Bhi02G001765	Wax gourd	lsiwgoB529
Lsi06G001770	Cp4.1LG11g09240	Cucurbita pepo (Zucchini)	cpelsiB094
Lsi06G001770	CsGy1G026290	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G001770	Carg27085	Silver-seed gourd	carlsiB702
Lsi06G001770	CsaV3_1G039430	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G001770	Cucumber (Gy14) v1	cgylsiB471