MELO3C015269 (gene) Melon (DHL92) v3.5.1

NameMELO3C015269
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description60S ribosomal protein L39
Locationchr2 : 435010 .. 436793 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAAACCCTAATCTATTGTTCTTTCCCTGAGCTAACAGAACGGCCACTTCTTCACTTTGCTCTCTCAGGTAATCTTCCTTCTCCCTCCTCTCTGTTGTTGGCTGTCTCTTCTTCTTTTCCGGTAGGACTTCATTTTCGTAGGCTTTTGTGTTGCCATGCCTTATATTGTCAGTTTGTAGAAGGATTTTGGAATTATTAGGCTACCGAGAACGTAAGTTTTCATTATTTAGAGATCGAAAATTGGGAAACTATGGAACTGCTTTGCTATTTGTAGCATTATTAGGTCAAAAGTTCTATTTATGAAGGCGGTTTAGATTCTGGAATTCTTGTGTTAATTTTGGATGTATATTTCTTACTGTATGGGTTTTTTTGTGTTAATTTGGATTATTATGATATGCTTATGTGAGTGAAACAAATAAAATGGTTAAGTGAGTAGAATAAAGGGACTCAATTTGATTGTTTTAAATACTGTAATGTAAGTATTTGTCTGAGTTTATTGCCTGATTGGTAACTTTCGATATTATTCAAGTTTTTTCTCCGAAAACGGTGTTTCTAAAGCCATGATTCTGGAATGCAGTTTACAAATTTTAACTATATCTTTATTCATTTGAACTTCAAAACCATAGATGTGGTGAATCTATTGAGACTCTCGCGGACACTCCAAAAGAAAAATAATGATAAAGAACAGAAAATATTTTATGAATTTTTTGTTGGTCTGAAATTCTATGTTGAATTATTCATTCTCTTATATTTTGTTCATTTATTTACATCTTGATGTTGATTCTTCATGGGACAGGTAATTTGTTGCTGACTTGCTGTCGTTGGCCAATTCCTGAATTTTGAAGATGGTAACTGTTTCTTCCTTGAAGTGATTTTGATGTGTTCCTTTTGATAATGTTTATATAATTTAAAGTCGATTTTATCATATTTAAAATTACTTCAAAACACGCCTTTGATCATTCAGAGTTATTTTAATGTTTAATTTTTCTCTTTTAAATGTCATTTTCATATCATGAAAGTTGAGTTTGAATAATTAAAAGCACATTTCAGAGTGATTTTGAGAATGACAAAAGTGATCTTAACCATTTTAGAGTCACACATTTGTTGAGTTCTGTTCTTGGAGATTGTTTCTTACAATGTGAGCTTTCTTTTATGTCTGCAGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAAAACAGGCCTATTCCTCACTGGATTCGGTTGAGGACTGACAACACCATCAGGTCTTTTTAACTCTCCTGTTCTGTCTTCAATCATACCAACATTTTTTGTTCTTCTCGTTTTAAATTTAACGTCATATTTTGGGATGTATTCTTCAGGTATAATGCTAAGAGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTAAGGTGTTTATCGTGTGGTTCGCTCTTCGTCCTGTTTTGAACCTATTTAAGTTATATGTTGGTTGTGGAGAAGACAAAGGATAACGAGCTAGATATTTGAAATTTTTTGCTCTTAGTTTAAGAACTTATTGAAGAGAAACTTACGGGAATTTTTAGATCTACTTCTGTTCAATTTATATCTGGAGTAATTTTGCATTCTTAAGTTTATTATGGTCTTAATTGTTCAAATATTTATGGGGATAAGATGAGGTTAGTGTCACACTTCTGTATAATTGCTTTTCTGATTCATGTATGACTAAATGGATAGGTTTGCATATTTGAACGAATTTTTTTCTAGTATAACCAAAAAGCCCTTTCGGGCGCCACCTCGGTTC

mRNA sequence

CAAAAACCCTAATCTATTGTTCTTTCCCTGAGCTAACAGAACGGCCACTTCTTCACTTTGCTCTCTCAGGTAATTTGTTGCTGACTTGCTGTCGTTGGCCAATTCCTGAATTTTGAAGATGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAAAACAGGCCTATTCCTCACTGGATTCGGTTGAGGACTGACAACACCATCAGGTATAATGCTAAGAGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTAAGGTGTTTATCGTGTGGTTCGCTCTTCGTCCTGTTTTGAACCTATTTAAGTTATATGTTGGTTGTGGAGAAGACAAAGGATAACGAGCTAGATATTTGAAATTTTTTGCTCTTAGTTTAAGAACTTATTGAAGAGAAACTTACGGGAATTTTTAGATCTACTTCTGTTCAATTTATATCTGGAGTAATTTTGCATTCTTAAGTTTATTATGGTCTTAATTGTTCAAATATTTATGGGGATAAGATGAGGTTAGTGTCACACTTCTGTATAATTGCTTTTCTGATTCATGTATGACTAAATGGATAGGTTTGCATATTTGAACGAATTTTTTTCTAGTATAACCAAAAAGCCCTTTCGGGCGCCACCTCGGTTC

Coding sequence (CDS)

ATGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAAAACAGGCCTATTCCTCACTGGATTCGGTTGAGGACTGACAACACCATCAGGTATAATGCTAAGAGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTAA

Protein sequence

MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF*
BLAST of MELO3C015269 vs. Swiss-Prot
Match: RL392_ORYSJ (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica GN=RPL39B PE=3 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 9.3e-24
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

BLAST of MELO3C015269 vs. Swiss-Prot
Match: RL391_ORYSJ (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica GN=RPL39A PE=3 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 9.3e-24
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

BLAST of MELO3C015269 vs. Swiss-Prot
Match: RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 9.3e-24
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

BLAST of MELO3C015269 vs. Swiss-Prot
Match: RL393_ORYSJ (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.7e-23
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

BLAST of MELO3C015269 vs. Swiss-Prot
Match: RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=3 SV=2)

HSP 1 Score: 107.5 bits (267), Expect = 4.6e-23
Identity = 48/51 (94.12%), Postives = 47/51 (92.16%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

BLAST of MELO3C015269 vs. TrEMBL
Match: A0A0A0LYE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568530 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.2e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

BLAST of MELO3C015269 vs. TrEMBL
Match: A0A0A0LM35_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382530 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.2e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 28 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78

BLAST of MELO3C015269 vs. TrEMBL
Match: A9PC42_POPTR (60S ribosomal protein L39 OS=Populus trichocarpa GN=POPTR_0006s27670g PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51

BLAST of MELO3C015269 vs. TrEMBL
Match: A0A059D7Q1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03153 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 43 MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 93

BLAST of MELO3C015269 vs. TrEMBL
Match: U5FJ51_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s12030g PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1

Query: 1   MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
           MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 54  MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 104

BLAST of MELO3C015269 vs. TAIR10
Match: AT4G31985.1 (AT4G31985.1 Ribosomal protein L39 family protein)

HSP 1 Score: 107.5 bits (267), Expect = 2.6e-24
Identity = 48/51 (94.12%), Postives = 47/51 (92.16%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

BLAST of MELO3C015269 vs. TAIR10
Match: AT3G02190.1 (AT3G02190.1 Ribosomal protein L39 family protein)

HSP 1 Score: 102.4 bits (254), Expect = 8.3e-23
Identity = 46/51 (90.20%), Postives = 46/51 (90.20%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

BLAST of MELO3C015269 vs. TAIR10
Match: AT2G25210.1 (AT2G25210.1 Ribosomal protein L39 family protein)

HSP 1 Score: 94.0 bits (232), Expect = 3.0e-20
Identity = 42/43 (97.67%), Postives = 40/43 (93.02%), Query Frame = 1

Query: 9  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  IKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

BLAST of MELO3C015269 vs. NCBI nr
Match: gi|449435607|ref|XP_004135586.1| (PREDICTED: 60S ribosomal protein L39 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 1.8e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

BLAST of MELO3C015269 vs. NCBI nr
Match: gi|700207861|gb|KGN62980.1| (hypothetical protein Csa_2G382530 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 1.8e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 28 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78

BLAST of MELO3C015269 vs. NCBI nr
Match: gi|629122004|gb|KCW86494.1| (hypothetical protein EUGRSUZ_B03153 [Eucalyptus grandis])

HSP 1 Score: 112.1 bits (279), Expect = 3.0e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 43 MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 93

BLAST of MELO3C015269 vs. NCBI nr
Match: gi|224091665|ref|XP_002309322.1| (hypothetical protein POPTR_0006s27670g [Populus trichocarpa])

HSP 1 Score: 112.1 bits (279), Expect = 3.0e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51

BLAST of MELO3C015269 vs. NCBI nr
Match: gi|566215419|ref|XP_006372129.1| (hypothetical protein POPTR_0018s12030g [Populus trichocarpa])

HSP 1 Score: 112.1 bits (279), Expect = 3.0e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1

Query: 1   MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
           MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 54  MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RL392_ORYSJ9.3e-2496.0860S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica GN=RPL39B PE=3 SV=2[more]
RL391_ORYSJ9.3e-2496.0860S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica GN=RPL39A PE=3 SV=2[more]
RL39_MAIZE9.3e-2496.0860S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1[more]
RL393_ORYSJ2.7e-2394.1260S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1[more]
RL391_ARATH4.6e-2394.1260S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=3 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0LYE1_CUCSA1.2e-22100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568530 PE=3 SV=1[more]
A0A0A0LM35_CUCSA1.2e-22100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382530 PE=3 SV=1[more]
A9PC42_POPTR2.1e-2298.0460S ribosomal protein L39 OS=Populus trichocarpa GN=POPTR_0006s27670g PE=2 SV=1[more]
A0A059D7Q1_EUCGR2.1e-2298.04Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03153 PE=3 SV=1[more]
U5FJ51_POPTR2.1e-2298.04Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s12030g PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT4G31985.12.6e-2494.12 Ribosomal protein L39 family protein[more]
AT3G02190.18.3e-2390.20 Ribosomal protein L39 family protein[more]
AT2G25210.13.0e-2097.67 Ribosomal protein L39 family protein[more]
Match NameE-valueIdentityDescription
gi|449435607|ref|XP_004135586.1|1.8e-22100.00PREDICTED: 60S ribosomal protein L39 [Cucumis sativus][more]
gi|700207861|gb|KGN62980.1|1.8e-22100.00hypothetical protein Csa_2G382530 [Cucumis sativus][more]
gi|629122004|gb|KCW86494.1|3.0e-2298.04hypothetical protein EUGRSUZ_B03153 [Eucalyptus grandis][more]
gi|224091665|ref|XP_002309322.1|3.0e-2298.04hypothetical protein POPTR_0006s27670g [Populus trichocarpa][more]
gi|566215419|ref|XP_006372129.1|3.0e-2298.04hypothetical protein POPTR_0018s12030g [Populus trichocarpa][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU43605melon EST collection version 4.0transcribed_cluster
MU58831melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015269T1MELO3C015269T1mRNA
MELO3C015269T2MELO3C015269T2mRNA
MELO3C015269T3MELO3C015269T3mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU43605MU43605transcribed_cluster
MU58831MU58831transcribed_cluster


The following gene(s) are paralogous to this gene:

None