Carg27009 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27009
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	60S ribosomal protein L39
Location	Cucurbita_argyrosperma_scaffold_374 : 69916 .. 71742 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCCGTTCAGATAGTGGGTGCACAATTCGACCTTCAACATATGGGTAGGGGCGCAATGTTGGCACATTGTACCGTCAGACACTGTCCTTGAAAGACCCATTTCAAAGGAAGTCACTCGAGACATTCGTCTCGTAACACTCGACCTCACTGTTTTTAACCATTTTTTAAAGTTTATTAATTAAAAAAATAAAATACAAAGTTTTAGTTTTTTTTATTATTATTAATTTAGGCTTATTTATTCAATAGCCTCGCATTTTGAATCGACATGTACTGGGCCCATTTATTCGATGCCCAAACTCGATGAATACTCATGAACCCTAATTCATTATAATCTTGCTTCTCCTCCTCCTCTTTGCCGTTGATTATCTCCGCTTCTTTATCGGTAAAACTTCAATTTCTTGAAAATCTCATTACTTCATTTATGCAATCTTGTTCTTTGGGATTTTATATAAGCGAAACAACGCTGGAATCCAATATTACGATCATAGGGGTCCACGGATTGTCAGTCGTTATGTTCGATATTGTTCGCCTTACAATTTCTATACGTTTTTGTAACTTGTGTGTGTCATGCCTTTTATTGTCGATTTATAGAATGAATTTGGAATTATTAGGCTAGCGAGAAAACAGTTTTTGATTGTTTAGAGATCGAGTTTGTCGGCCATTAATCTGAACATTGTGGAGCTGATGCGCTGTTTGTCATTTGTGTATTATTTGAAGTCTGGAATTTTCGGTGGAGGGAGTGAAGTACTATTGATTTAGGATGTATATACTTCACCACTGCAGTTTTCTTTGTTTTTGTTTTTGTTTTGTGAACTTGAGTGGAACAAATAGAACAGTTCTATGAGTAGAATAAAGTGACTCAATTCTACTGTATGAATCCTTAATTTTGTAAGGTACATACTAGTTCTGAGTTTATTGCTCGATTGGTAATTTCCGATATCTTTCAATTCTTTTCTTCATAAACAGTGTTTCTGAATCAATGCTTTTGGCGTGCAGTTTACAAATTTTAACTATATCATTGTTCATTTGATTACCATGGATGACACTCCTGCAGACACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTTGCAGAATATGAGTTTCCCTTTTTTTAATCTGGACTTCAATGTTGAATTATTCATTCTCTTTATGTTTTTTCATTTGGTTTATGTGTTGATGGTGGTTCTTCCTGTATCAGGCAATTTCTCGCTGTTGTCGACCGAATCCTGAATTTCGAAGATGGTAACTATTTCTTCTTGGAAGTGATTTTTATGTGTTGCCGATGTATTTTAGTTATATATTCAATTGAGTTTTGTTTTGGGAGATTGTGTTTTATGATGTGAGTTTTCTTTAATGTTTGCAGCCGTCTCACAAGACCTTCATAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATACGGTTGAGAACTGACAACACCATCAGGTCTTCAGCTCTTTTCTGCCTTTTTTTCATATTATCTCATTTCTGTTCTTCTCAGTTTTGAATTTAACATCATATGTTGATGTATCCTTCAGGTACAATGCTAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGATTTTGAGGTGTTTCTCTTGTGATTTGCTCTTCATCCTGTTTGGAATCTTGTTTTAACTGTTATGTTAGTTGTGGAGAAGACAAAGGATATAGAGCTAGAGTTTTGAATTTTTTTCCTCTTAATTTAAGAACTTATTGAAGAGAAACTCACGATAATCTTTAGATTTACTGCACTGTTCAATTTATATCTGCAGTAATTTCTATTATCAAGTTAA

mRNA sequence

ATGGAATCCGTTCAGATAGTGGGTGCACAATTCGACCTTCAACATATGGGTAGGGGCGCAATGCAATTTCTCGCTGTTGTCGACCGAATCCTGAATTTCGAAGATGGTAACTATTTCTTCTTGGAACCGTCTCACAAGACCTTCATAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATACGGTTGAGAACTGACAACACCATCAGGTACAATGCTAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGATTTTGAGGTGTTTCTCTTGTGATTTGCTCTTCATCCTGTTTGGAATCTTGTTTTAACTGTTATGTTAGTTGTGGAGAAGACAAAGGATATAGAGCTAGAGTTTTGAATTTTTTTCCTCTTAATTTAAGAACTTATTGAAGAGAAACTCACGATAATCTTTAGATTTACTGCACTGTTCAATTTATATCTGCAGTAATTTCTATTATCAAGTTAA

Coding sequence (CDS)

ATGGAATCCGTTCAGATAGTGGGTGCACAATTCGACCTTCAACATATGGGTAGGGGCGCAATGCAATTTCTCGCTGTTGTCGACCGAATCCTGAATTTCGAAGATGGTAACTATTTCTTCTTGGAACCGTCTCACAAGACCTTCATAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATACGGTTGAGAACTGACAACACCATCAGGTACAATGCTAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGATTTTGA

Protein sequence

MESVQIVGAQFDLQHMGRGAMQFLAVVDRILNFEDGNYFFLEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Homology

[Close]

BLAST of Carg27009 vs. NCBI nr
Match: PLY88437.1 (hypothetical protein LSAT_8X59320 [Lactuca sativa])

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-21
Identity = 49/56 (87.50%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 37 NYFFLEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 93
          N ++L+PSHK+F+IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  NVYYLQPSHKSFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 57

[Close]

BLAST of Carg27009 vs. NCBI nr
Match: XP_020414429.1 (60S ribosomal protein L39-1 [Prunus persica] >XP_021820892.1 60S ribosomal protein L39-1 [Prunus avium] >XP_022135168.1 60S ribosomal protein L39-1-like [Momordica charantia] >XP_022961506.1 60S ribosomal protein L39-1 [Cucurbita moschata] >XP_023516431.1 60S ribosomal protein L39-1 [Cucurbita pepo subsp. pepo] >ONI32872.1 hypothetical protein PRUPE_1G390600 [Prunus persica])

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 43 PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 93
          PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg27009 vs. NCBI nr
Match: PKI64675.1 (hypothetical protein CRG98_014891 [Punica granatum])

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 40 FLEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 93
          F++PSHKTF IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 35 FVQPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 87

[Close]

BLAST of Carg27009 vs. NCBI nr
Match: XP_008220702.1 (PREDICTED: 60S ribosomal protein L39-1 [Prunus mume])

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-20
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 43 PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 93
          PSHKTF+IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFVIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg27009 vs. NCBI nr
Match: CBI21094.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 107.5 bits (267), Expect = 2.5e-20
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 43  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 93
           PSHKTFIIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 63  PSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 112

[Close]

BLAST of Carg27009 vs. TAIR10
Match: AT4G31985.1 (Ribosomal protein L39 family protein)

HSP 1 Score: 104.0 bits (258), Expect = 5.1e-23
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 43 PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 93
          PSHK+F+IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg27009 vs. TAIR10
Match: AT3G02190.1 (Ribosomal protein L39 family protein)

HSP 1 Score: 99.0 bits (245), Expect = 1.6e-21
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 43 PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 93
          PSHK+F+IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg27009 vs. TAIR10
Match: AT2G25210.1 (Ribosomal protein L39 family protein)

HSP 1 Score: 91.7 bits (226), Expect = 2.6e-19
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 49 IIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 93
          +IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

[Close]

BLAST of Carg27009 vs. Swiss-Prot
Match: sp|P51424|RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 9.1e-22
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 43 PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 93
          PSHK+F+IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg27009 vs. Swiss-Prot
Match: sp|Q6KAJ8|RL391_ORYSJ (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 102.4 bits (254), Expect = 2.7e-21
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 43 PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 93
          PSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg27009 vs. Swiss-Prot
Match: sp|P51426|RL392_ORYSJ (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 102.4 bits (254), Expect = 2.7e-21
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 43 PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 93
          PSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg27009 vs. Swiss-Prot
Match: sp|Q5SMI4|RL393_ORYSJ (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.7e-21
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 43 PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 93
          PSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg27009 vs. Swiss-Prot
Match: sp|P51425|RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.7e-21
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 43 PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 93
          PSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg27009 vs. TrEMBL
Match: tr|A0A2J6LM76|A0A2J6LM76_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_8X59320 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21
Identity = 49/56 (87.50%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 37 NYFFLEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 93
          N ++L+PSHK+F+IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  NVYYLQPSHKSFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 57

[Close]

BLAST of Carg27009 vs. TrEMBL
Match: tr|F6H3U8|F6H3U8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0008g06030 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.4e-21
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 37 NYFFLE--PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 93
          N F+L+  PSHKTFIIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 10 NQFYLDFKPSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 67

[Close]

BLAST of Carg27009 vs. TrEMBL
Match: tr|A0A251RA49|A0A251RA49_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G390600 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.8e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 43 PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 93
          PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg27009 vs. TrEMBL
Match: tr|A0A2I0K803|A0A2I0K803_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_014891 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.8e-21
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 40 FLEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 93
          F++PSHKTF IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 35 FVQPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 87

[Close]

BLAST of Carg27009 vs. TrEMBL
Match: tr|A0A251JCV2|A0A251JCV2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G039600 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.7e-20
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 43 PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 93
          PSHKTFIIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51

The following BLAST results are available for this feature:

BLAST of Carg27009 vs. NCBI nr


Match Name	E-value	Identity	Description
PLY88437.1	2.3e-21	87.50	hypothetical protein LSAT_8X59320 [Lactuca sativa]	[more]
XP_020414429.1	1.5e-20	100.00	60S ribosomal protein L39-1 [Prunus persica] >XP_021820892.1 60S ribosomal prote...	[more]
PKI64675.1	1.5e-20	92.45	hypothetical protein CRG98_014891 [Punica granatum]	[more]
XP_008220702.1	1.9e-20	98.00	PREDICTED: 60S ribosomal protein L39-1 [Prunus mume]	[more]
CBI21094.3	2.5e-20	98.00	unnamed protein product, partial [Vitis vinifera]	[more]

BLAST of Carg27009 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31985.1	5.1e-23	94.00	Ribosomal protein L39 family protein	[more]
AT3G02190.1	1.6e-21	90.00	Ribosomal protein L39 family protein	[more]
AT2G25210.1	2.6e-19	95.45	Ribosomal protein L39 family protein	[more]

BLAST of Carg27009 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P51424\|RL391_ARATH	9.1e-22	94.00	60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2	[more]
sp\|Q6KAJ8\|RL391_ORYSJ	2.7e-21	94.00	60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P...	[more]
sp\|P51426\|RL392_ORYSJ	2.7e-21	94.00	60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P...	[more]
sp\|Q5SMI4\|RL393_ORYSJ	2.7e-21	94.00	60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P...	[more]
sp\|P51425\|RL39_MAIZE	2.7e-21	94.00	60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1	[more]

BLAST of Carg27009 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2J6LM76\|A0A2J6LM76_LACSA	1.5e-21	87.50	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_8X59320 PE=4 SV=1	[more]
tr\|F6H3U8\|F6H3U8_VITVI	3.4e-21	89.66	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0008g06030 PE=4 SV=...	[more]
tr\|A0A251RA49\|A0A251RA49_PRUPE	9.8e-21	100.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G390600 PE=3 SV=1	[more]
tr\|A0A2I0K803\|A0A2I0K803_PUNGR	9.8e-21	92.45	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_014891 PE=4 SV=1	[more]
tr\|A0A251JCV2\|A0A251JCV2_MANES	1.7e-20	98.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G039600 PE=3 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR020083	Ribosomal_L39_CS
IPR000077	Ribosomal_L39
IPR023626	Ribosomal_L39e_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27009-RA	Carg27009-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023626	Ribosomal protein L39e domain superfamily	GENE3D	G3DSA:1.10.1620.10		coord: 42..92 e-value: 2.1E-30 score: 106.2
IPR023626	Ribosomal protein L39e domain superfamily	SUPERFAMILY	SSF48662	Ribosomal protein L39e	coord: 44..91
IPR000077	Ribosomal protein L39e	PFAM	PF00832	Ribosomal_L39	coord: 50..90 e-value: 3.6E-22 score: 77.6
IPR000077	Ribosomal protein L39e	PANTHER	PTHR19970	RIBOSOMAL PROTEIN L39E	coord: 33..92
None	No IPR available	PANTHER	PTHR19970:SF13	SUBFAMILY NOT NAMED	coord: 33..92
None	No IPR available	PRODOM	PD007914		coord: 43..78 e-value: 3.0E-7 score: 124.0
IPR020083	Ribosomal protein L39e, conserved site	PROSITE	PS00051	RIBOSOMAL_L39E	coord: 71..87

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27009	Csa1G568530	Cucumber (Chinese Long) v2	carcuB0616
Carg27009	MELO3C015269	Melon (DHL92) v3.5.1	carmeB0593
Carg27009	CSPI01G26020	Wild cucumber (PI 183967)	carcpiB0622
Carg27009	Cucsa.051250	Cucumber (Gy14) v1	carcgyB0662
Carg27009	CmaCh10G011480	Cucurbita maxima (Rimu)	carcmaB0822
Carg27009	Cp4.1LG18g00310	Cucurbita pepo (Zucchini)	carcpeB0836
Carg27009	MELO3C015269.2	Melon (DHL92) v3.6.1	carmedB0600
Carg27009	CsaV3_1G038440	Cucumber (Chinese Long) v3	carcucB0623
Carg27009	Bhi02G001800	Wax gourd	carwgoB0699

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg27009	Cucurbita moschata (Rifu)	carcmoB0800
Carg27009	Watermelon (97103) v2	carwmbB0615