MU43605 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU43605
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	60S ribosomal protein L39
Location	chr2 : 435039 .. 436678 (+)
Sequence length	547

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GAGCTAACAGAACGGCCACTTCTTCACTTTGCTCTCTCAGGTAATTTGTTGCTGACTTGCTGTCGTTGGCCAATTCCTGAATTTTGAAGATGCCGCCTCACAAGACTTTCAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAAAACAGGCCTATTCCTCACTGGATTCGGTTGAGGACTGACAACACCATCAGGTATAATGCTAAGAGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTAAGGTGTTTATCGTGTGGTTCGCTCTTCGTCCTGTTTTGAACCTATTTAAGTTATATGTTGGTTGTGGAGAAGACAAAGGATAGCGAGCTAGATATTTGAATTTTTTGCTCTTAGTTTAAGAACTTATTGAAGAGAAACTTACGGGAATTTTTAGATCTACTTCTGTTCAATTTATATCTGGAGTAATTTTGCATTCTTAAGTTAATATTGGTTTTGGGGCTTATTCTTCTTAGCTCATTATGGAGTTATTTATTATGGTCTTAATTGTTCAAATATTTATGGGGATAAGATGAGGTTAGTGTC

Library


Library category	ESTs
melon 15d library	1
melon MNFG2 library	1
melon MNR09P2 library	3
melon CI library	1
melon DFLP2 library	4
melon SFLP2 library	1
melon HS library	1
melon MNCP2 library	1
melon DFTP2 library	1
melon PS library	2

Homology

[Close]

BLAST of MU43605 vs. Swiss-Prot
Match: RL392_ORYSJ (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica GN=RPL39B PE=3 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-22
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3


Query: 90  MPPHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 149
           MP HKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

Query: 150  209
           
Sbjct: 61   51

Query: 210  243
           
Sbjct: 121  51

[Close]

BLAST of MU43605 vs. Swiss-Prot
Match: RL391_ORYSJ (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica GN=RPL39A PE=3 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-22
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3


Query: 90  MPPHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 149
           MP HKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

Query: 150  209
           
Sbjct: 61   51

Query: 210  243
           
Sbjct: 121  51

[Close]

BLAST of MU43605 vs. Swiss-Prot
Match: RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-22
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3


Query: 90  MPPHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 149
           MP HKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

Query: 150  209
           
Sbjct: 61   51

Query: 210  243
           
Sbjct: 121  51

[Close]

BLAST of MU43605 vs. Swiss-Prot
Match: RL393_ORYSJ (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.6e-22
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 3


Query: 90  MPPHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 149
           MP HKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

Query: 150  209
           
Sbjct: 61   51

Query: 210  243
           
Sbjct: 121  51

[Close]

BLAST of MU43605 vs. Swiss-Prot
Match: RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=3 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 6.1e-22
Identity = 47/51 (92.16%), Postives = 46/51 (90.20%), Query Frame = 3


Query: 90  MPPHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 149
           MP HK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

Query: 150  209
           
Sbjct: 61   51

Query: 210  243
           
Sbjct: 121  51

[Close]

BLAST of MU43605 vs. TrEMBL
Match: A0A0A0LM35_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382530 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-23
Identity = 62/77 (80.52%), Postives = 62/77 (80.52%), Query Frame = 3


Query: 12  TATSSLCSLR*FVADLLSLANS*ILKMPPHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNT 71
           T   S CSL  FVA  L  A   I KMP HKTFRIKKKLAKKMRQNRPIPHWIRLRTDNT
Sbjct: 6   TGFRSFCSL--FVA--LVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNT 65

Query: 72  IRYNAKRRHWRRTKLGF 131
           IRYNAKRRHWRRTKLGF
Sbjct: 66  IRYNAKRRHWRRTKLGF 78

Query: 132  191
           
Sbjct: 126  78

Query: 192  243
           
Sbjct: 186  78

[Close]

BLAST of MU43605 vs. TrEMBL
Match: U5FJ51_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s12030g PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.2e-22
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 3


Query: 87  KMPPHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 146
           KMP HKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 53  KMPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 104

Query: 147  206
           
Sbjct: 113  104

Query: 207  243
           
Sbjct: 173  104

[Close]

BLAST of MU43605 vs. TrEMBL
Match: A0A059D7Q1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03153 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.2e-22
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 3


Query: 87  KMPPHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 146
           KMP HKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 42  KMPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 93

Query: 147  206
           
Sbjct: 102  93

Query: 207  243
           
Sbjct: 162  93

[Close]

BLAST of MU43605 vs. TrEMBL
Match: M0SEA6_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.2e-22
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 3


Query: 87  KMPPHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 146
           KMP HKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 22  KMPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 73

Query: 147  206
           
Sbjct: 82   73

Query: 207  243
           
Sbjct: 142  73

[Close]

BLAST of MU43605 vs. TrEMBL
Match: A0A0A0LYE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568530 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-21
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 3


Query: 90  MPPHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 149
           MP HKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

Query: 150  209
           
Sbjct: 61   51

Query: 210  243
           
Sbjct: 121  51

[Close]

BLAST of MU43605 vs. TAIR10
Match: AT4G31985.1 (AT4G31985.1 Ribosomal protein L39 family protein)

HSP 1 Score: 105.5 bits (262), Expect = 3.4e-23
Identity = 47/51 (92.16%), Postives = 46/51 (90.20%), Query Frame = 3


Query: 90  MPPHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 149
           MP HK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

Query: 150  209
           
Sbjct: 61   51

Query: 210  243
           
Sbjct: 121  51

[Close]

BLAST of MU43605 vs. TAIR10
Match: AT3G02190.1 (AT3G02190.1 Ribosomal protein L39 family protein)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-21
Identity = 45/51 (88.24%), Postives = 45/51 (88.24%), Query Frame = 3


Query: 90  MPPHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 149
           MP HK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

Query: 150  209
           
Sbjct: 61   51

Query: 210  243
           
Sbjct: 121  51

[Close]

BLAST of MU43605 vs. TAIR10
Match: AT2G25210.1 (AT2G25210.1 Ribosomal protein L39 family protein)

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-19
Identity = 42/43 (97.67%), Postives = 40/43 (93.02%), Query Frame = 3


Query: 114 IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 173
           IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2   IKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

Query: 174  233
           
Sbjct: 62   44

Query: 234  243
           
Sbjct: 122  44

[Close]

BLAST of MU43605 vs. NCBI nr
Match: gi|700207861|gb|KGN62980.1| (hypothetical protein Csa_2G382530 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-22
Identity = 62/77 (80.52%), Postives = 62/77 (80.52%), Query Frame = 3


Query: 12  TATSSLCSLR*FVADLLSLANS*ILKMPPHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNT 71
           T   S CSL  FVA  L  A   I KMP HKTFRIKKKLAKKMRQNRPIPHWIRLRTDNT
Sbjct: 6   TGFRSFCSL--FVA--LVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNT 65

Query: 72  IRYNAKRRHWRRTKLGF 131
           IRYNAKRRHWRRTKLGF
Sbjct: 66  IRYNAKRRHWRRTKLGF 78

Query: 132  191
           
Sbjct: 126  78

Query: 192  243
           
Sbjct: 186  78

[Close]

BLAST of MU43605 vs. NCBI nr
Match: gi|629122004|gb|KCW86494.1| (hypothetical protein EUGRSUZ_B03153 [Eucalyptus grandis])

HSP 1 Score: 109.8 bits (273), Expect = 5.2e-21
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 3


Query: 87  KMPPHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 146
           KMP HKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 42  KMPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 93

Query: 147  206
           
Sbjct: 102  93

Query: 207  243
           
Sbjct: 162  93

[Close]

BLAST of MU43605 vs. NCBI nr
Match: gi|566215419|ref|XP_006372129.1| (hypothetical protein POPTR_0018s12030g [Populus trichocarpa])

HSP 1 Score: 109.8 bits (273), Expect = 5.2e-21
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 3


Query: 87  KMPPHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 146
           KMP HKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 53  KMPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 104

Query: 147  206
           
Sbjct: 113  104

Query: 207  243
           
Sbjct: 173  104

[Close]

BLAST of MU43605 vs. NCBI nr
Match: gi|449435607|ref|XP_004135586.1| (PREDICTED: 60S ribosomal protein L39 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 3


Query: 90  MPPHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 149
           MP HKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

Query: 150  209
           
Sbjct: 61   51

Query: 210  243
           
Sbjct: 121  51

[Close]

BLAST of MU43605 vs. NCBI nr
Match: gi|670413178|ref|XP_008647774.1| (PREDICTED: LOC100280595 isoform X1 [Zea mays])

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 3


Query: 15  ATSSLCSLR*FVADLLSLANS*ILKMPPHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI 74
           +T SL  ++ F   ++S A +    MP HKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTI
Sbjct: 415 STESLRPIQGFPCSVVSAAET----MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTI 474

Query: 75  RYNAKRRHWRRTKLGF 134
           RYNAKRRHWRRTKLGF
Sbjct: 475 RYNAKRRHWRRTKLGF 486

Query: 135  194
           
Sbjct: 535  486

Query: 195  243
           
Sbjct: 595  486

The following BLAST results are available for this feature:

BLAST of MU43605 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL392_ORYSJ	1.2e-22	94.12	60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica GN=RPL39B PE=3 SV=2	[more]
RL391_ORYSJ	1.2e-22	94.12	60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica GN=RPL39A PE=3 SV=2	[more]
RL39_MAIZE	1.2e-22	94.12	60S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1	[more]
RL393_ORYSJ	3.6e-22	92.16	60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1	[more]
RL391_ARATH	6.1e-22	92.16	60S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=3 SV=2	[more]

BLAST of MU43605 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM35_CUCSA	1.3e-23	80.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382530 PE=3 SV=1	[more]
U5FJ51_POPTR	7.2e-22	96.15	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s12030g PE=3 SV=1	[more]
A0A059D7Q1_EUCGR	7.2e-22	96.15	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03153 PE=3 SV=1	[more]
M0SEA6_MUSAM	7.2e-22	96.15	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1	[more]
A0A0A0LYE1_CUCSA	1.6e-21	98.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568530 PE=3 SV=1	[more]

BLAST of MU43605 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31985.1	3.4e-23	92.16	Ribosomal protein L39 family protein	[more]
AT3G02190.1	1.1e-21	88.24	Ribosomal protein L39 family protein	[more]
AT2G25210.1	1.0e-19	97.67	Ribosomal protein L39 family protein	[more]

BLAST of MU43605 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207861\|gb\|KGN62980.1\|	1.6e-22	80.52	hypothetical protein Csa_2G382530 [Cucumis sativus]	[more]
gi\|629122004\|gb\|KCW86494.1\|	5.2e-21	96.15	hypothetical protein EUGRSUZ_B03153 [Eucalyptus grandis]	[more]
gi\|566215419\|ref\|XP_006372129.1\|	5.2e-21	96.15	hypothetical protein POPTR_0018s12030g [Populus trichocarpa]	[more]
gi\|449435607\|ref\|XP_004135586.1\|	1.1e-20	98.04	PREDICTED: 60S ribosomal protein L39 [Cucumis sativus]	[more]
gi\|670413178\|ref\|XP_008647774.1\|	1.1e-20	71.05	PREDICTED: LOC100280595 isoform X1 [Zea mays]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR000077	Ribosomal_L39
IPR020083	Ribosomal_L39_CS
IPR023626	Ribosomal_L39e_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C015269	MELO3C015269	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
15D19E03	15D19E03	EST
BA16YH03FM1	BA16YH03FM1	EST
CA15YA06FM1	CA15YA06FM1	EST
CA18YO13FM1	CA18YO13FM1	EST
CA2YO07FM1	CA2YO07FM1	EST
CI34C09	CI34C09	EST
EA3YL01FM1	EA3YL01FM1	EST
EA7YB20FM1	EA7YB20FM1	EST
EA7YE15FM1	EA7YE15FM1	EST
EA9YN14FM1	EA9YN14FM1	EST
FA1YC17FM1	FA1YC17FM1	EST
HS18D11	HS18D11	EST
KA4YH12FM1	KA4YH12FM1	EST
LA3YB12FM1	LA3YB12FM1	EST
PS21D04	PS21D04	EST
PS38B10	PS38B10	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000077	Ribosomal protein L39e	HAMAP	MF_00629	Ribosomal_L39e	coord: 1..51 score: 12
IPR000077	Ribosomal protein L39e	PANTHER	PTHR19970	RIBOSOMAL PROTEIN L39E	coord: 2..51 score: 3.6
IPR000077	Ribosomal protein L39e	PFAM	PF00832	Ribosomal_L39	coord: 9..49 score: 6.7
IPR020083	Ribosomal protein L39e, conserved site	PROSITE	PS00051	RIBOSOMAL_L39E	coord: 30..46 scor
IPR023626	Ribosomal protein L39e domain	GENE3D	G3DSA:1.10.1620.10		coord: 4..51 score: 3.0
IPR023626	Ribosomal protein L39e domain	unknown	SSF48662	Ribosomal protein L39e	coord: 4..50 score: 4.97
None	No IPR available	PRODOM	PD007914		coord: 1..37 score: 5.0