MELO3C014298.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C014298.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionCST complex subunit STN1
Locationchr05 : 4097131 .. 4097792 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCTATTTATGAACTTCAATTGGGCTCTCATTGATCTACAAAAAAAAGCCCATTGGGCTAAAAATTTAACTCAACCACAACCGGAGAAACTACACATTAGGTTTCCGATGAACCAACGGCAACGTTTCTCGTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGGTTTCGACCTAAATTCCCTCAACCAAAATTCCTCTTCTGATTCAGTTTCTTTCTCTCGCAAAGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGGTCTTCCGTGACCTGAAGCCTAACAGGTTTCTCAAATTCTCCGTTGACGATGGTACTGCATGTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCCAGATGTTCGAATTCTGGCAGATATGGCGACCCATTTCGCAGCCCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTATACCCACTTAGCTGTAGATTCCAATGGCTTTAAAATGCTATCTCTCGTTTTCTGA

mRNA sequence

ATGGGCCTATTTATGAACTTCAATTGGGCTCTCATTGATCTACAAAAAAAAGCCCATTGGGCTAAAAATTTAACTCAACCACAACCGGAGAAACTACACATTAGGTTTCCGATGAACCAACGGCAACGTTTCTCGTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGGTTTCGACCTAAATTCCCTCAACCAAAATTCCTCTTCTGATTCAGTTTCTTTCTCTCGCAAAGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGGTCTTCCGTGACCTGAAGCCTAACAGGTTTCTCAAATTCTCCGTTGACGATGGTACTGCATGTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCCAGATGTTCGAATTCTGGCAGATATGGCGACCCATTTCGCAGCCCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTATACCCACTTAGCTGTAGATTCCAATGGCTTTAAAATGCTATCTCTCGTTTTCTGA

Coding sequence (CDS)

ATGGGCCTATTTATGAACTTCAATTGGGCTCTCATTGATCTACAAAAAAAAGCCCATTGGGCTAAAAATTTAACTCAACCACAACCGGAGAAACTACACATTAGGTTTCCGATGAACCAACGGCAACGTTTCTCGTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGGTTTCGACCTAAATTCCCTCAACCAAAATTCCTCTTCTGATTCAGTTTCTTTCTCTCGCAAAGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGGTCTTCCGTGACCTGAAGCCTAACAGGTTTCTCAAATTCTCCGTTGACGATGGTACTGCATGTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCCAGATGTTCGAATTCTGGCAGATATGGCGACCCATTTCGCAGCCCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTATACCCACTTAG

Protein sequence

MGLFMNFNWALIDLQKKAHWAKNLTQPQPEKLHIRFPMNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT
Homology
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BLAST of MELO3C014298.2 vs. NCBI nr
Match: XP_008449339.1 (PREDICTED: CST complex subunit STN1 [Cucumis melo])

HSP 1 Score: 422.2 bits (1084), Expect = 1.0e-114
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0 

Query: 1   MGLFMNFNWALIDLQKKAHWAKNLTQPQPEKLHIRFPMNQRQRFSFSLYQTHVKLLGFDL 60
           MGLFMNFNWALIDLQKKAHWAKNLTQPQPEKLHIRFPMNQRQRFSFSLYQTHVKLLGFDL
Sbjct: 14  MGLFMNFNWALIDLQKKAHWAKNLTQPQPEKLHIRFPMNQRQRFSFSLYQTHVKLLGFDL 73

Query: 61  NSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNH 120
           NSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNH
Sbjct: 74  NSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNH 133

Query: 121 LTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDP 180
           LTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDP
Sbjct: 134 LTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDP 193

Query: 181 NAEILHWLDSMRLAMKCYDLSPIPT 206
           NAEILHWLDSMRLAMKCYDLSPIPT
Sbjct: 194 NAEILHWLDSMRLAMKCYDLSPIPT 218

[Close]
BLAST of MELO3C014298.2 vs. NCBI nr
Match: XP_004145384.1 (PREDICTED: CST complex subunit STN1 [Cucumis sativus] >KGN61681.1 hypothetical protein Csa_2G223720 [Cucumis sativus])

HSP 1 Score: 329.7 bits (844), Expect = 7.0e-87
Identity = 162/168 (96.43%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 38  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 97
           MNQR+RFSFSLYQTHVKLL FDLNSLNQ SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP
Sbjct: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60

Query: 98  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR 157
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH DVRIL DMATHFAAQIRVGIVVRVR
Sbjct: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR 120

Query: 158 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 206
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSP PT
Sbjct: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT 168

[Close]
BLAST of MELO3C014298.2 vs. NCBI nr
Match: XP_022963452.1 (LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata])

HSP 1 Score: 327.0 bits (837), Expect = 4.5e-86
Identity = 161/210 (76.67%), Postives = 182/210 (86.67%), Query Frame = 0 

Query: 1   MGLFMNFNWALIDLQK---KAHWAKNLTQPQPEKLHIRFPMNQRQRFSFSLYQTHVKLLG 60
           MGL +NFNWAL  L K   +A WA+ LTQP+P +L  RFPMNQ++  +FSLY TH+KLLG
Sbjct: 1   MGLSLNFNWALTYLTKAQIQAQWARGLTQPEPXELRSRFPMNQQR--AFSLYHTHIKLLG 60

Query: 61  FDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGC 120
           FDLNSL Q   +SSSD+VSFSR+GYAVSC EIVGVVVFRDLKPNRFL+FSVDDGT CV C
Sbjct: 61  FDLNSLTQSASSSSSDAVSFSRRGYAVSCVEIVGVVVFRDLKPNRFLRFSVDDGTGCVSC 120

Query: 121 ILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDV 180
           ILWLNHLTS YFASRH PDVRI+ +MATHFAAQIRVGIV RVRG++SSYRG+VQ+TVSDV
Sbjct: 121 ILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVARVRGRVSSYRGVVQMTVSDV 180

Query: 181 VVEDDPNAEILHWLDSMRLAMKCYDLSPIP 205
           VVE+DPNAEILHWLD MRLA+KCYDLSP P
Sbjct: 181 VVENDPNAEILHWLDCMRLALKCYDLSPAP 208

[Close]
BLAST of MELO3C014298.2 vs. NCBI nr
Match: XP_023553655.1 (CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553656.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553657.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 284.3 bits (726), Expect = 3.4e-73
Identity = 139/170 (81.76%), Postives = 154/170 (90.59%), Query Frame = 0 

Query: 38  MNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRD 97
           MNQ++  +FSLY TH+KLLGFDLNSL Q   +SSSD+VSFSR+GYAVSC E+VGVVVFRD
Sbjct: 1   MNQQR--AFSLYHTHIKLLGFDLNSLAQSSSSSSSDAVSFSRRGYAVSCVEVVGVVVFRD 60

Query: 98  LKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVV 157
           LKPNRFL+FSVDDGT CV CILWLNHLTS YFASRH PDVRI+ +MATHFAAQIRVGIV 
Sbjct: 61  LKPNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVA 120

Query: 158 RVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIP 205
           RVRGK+SSYRG+VQITVSDVVVE+DPNAEILHWLD MRLA+KCYDLSP P
Sbjct: 121 RVRGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 168

[Close]
BLAST of MELO3C014298.2 vs. NCBI nr
Match: XP_022967373.1 (CST complex subunit STN1 [Cucurbita maxima] >XP_022967374.1 CST complex subunit STN1 [Cucurbita maxima] >XP_022967375.1 CST complex subunit STN1 [Cucurbita maxima])

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 130/160 (81.25%), Postives = 144/160 (90.00%), Query Frame = 0 

Query: 35  RFPMNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVV 94
           RFPMNQ++  +FSLY TH+KLLGFDLNSL Q   +SSSD+VSFSR+G+AVSC EIVGVVV
Sbjct: 16  RFPMNQQR--AFSLYHTHIKLLGFDLNSLTQSSSSSSSDAVSFSRRGFAVSCAEIVGVVV 75

Query: 95  FRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVG 154
            RDLKPNRFL+FSVDDGT CV CILWLNHLTS YFASRH PDVRI+ +MATHFAAQIRVG
Sbjct: 76  SRDLKPNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVG 135

Query: 155 IVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSM 192
           IV RVRGK+SSYRG+VQITVSDVVVE+DPNAEILHWLD M
Sbjct: 136 IVARVRGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCM 173

[Close]
BLAST of MELO3C014298.2 vs. TAIR10
Match: AT1G07130.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 157.5 bits (397), Expect = 8.6e-39
Identity = 84/153 (54.90%), Postives = 104/153 (67.97%), Query Frame = 0 

Query: 47  SLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSV 106
           SL  TH KL+  D+  L Q S ++S SFS  G A VS  EIVG +V RDL P +FLKF V
Sbjct: 4   SLQSTHAKLVARDIQRLTQ-SPTESNSFSLLGGACVSRVEIVGTIVSRDLTP-KFLKFGV 63

Query: 107 DDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRG 166
           DDGT CV C++WLN LTSSYF+      + +LA  A   AAQIR+G V RVRG++ SYRG
Sbjct: 64  DDGTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSYRG 123

Query: 167 MVQITVSDVVVEDDPNAEILHWLDSMRLAMKCY 199
           ++QIT +  V E DPNAEILHWL+ ++L   CY
Sbjct: 124 VMQITANVAVAERDPNAEILHWLECLKLGQSCY 154

[Close]
BLAST of MELO3C014298.2 vs. TAIR10
Match: AT2G24490.1 (replicon protein A2)

HSP 1 Score: 42.0 bits (97), Expect = 5.3e-04
Identity = 30/123 (24.39%), Postives = 53/123 (43.09%), Query Frame = 0 

Query: 67  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYF 126
           SS +       G +++   +VG+V  +D      ++F++DDGT  + C  W+    S  F
Sbjct: 56  SSGEKSGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWV----SETF 115

Query: 127 ASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILH 186
            +R                  +R G  VR+ G L +++G  Q+ V  V    D N    H
Sbjct: 116 DARE--------------MESVRDGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFH 160

Query: 187 WLD 190
           +++
Sbjct: 176 YIE 160

[Close]
BLAST of MELO3C014298.2 vs. Swiss-Prot
Match: sp|Q9LMK5|STN1_ARATH (CST complex subunit STN1 OS=Arabidopsis thaliana OX=3702 GN=STN1 PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.6e-37
Identity = 84/153 (54.90%), Postives = 104/153 (67.97%), Query Frame = 0 

Query: 47  SLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSV 106
           SL  TH KL+  D+  L Q S ++S SFS  G A VS  EIVG +V RDL P +FLKF V
Sbjct: 4   SLQSTHAKLVARDIQRLTQ-SPTESNSFSLLGGACVSRVEIVGTIVSRDLTP-KFLKFGV 63

Query: 107 DDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRG 166
           DDGT CV C++WLN LTSSYF+      + +LA  A   AAQIR+G V RVRG++ SYRG
Sbjct: 64  DDGTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSYRG 123

Query: 167 MVQITVSDVVVEDDPNAEILHWLDSMRLAMKCY 199
           ++QIT +  V E DPNAEILHWL+ ++L   CY
Sbjct: 124 VMQITANVAVAERDPNAEILHWLECLKLGQSCY 154

[Close]
BLAST of MELO3C014298.2 vs. Swiss-Prot
Match: sp|Q08DB2|STN1_BOVIN (CST complex subunit STN1 OS=Bos taurus OX=9913 GN=STN1 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.2e-06
Identity = 44/164 (26.83%), Postives = 73/164 (44.51%), Query Frame = 0 

Query: 48  LYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDD 107
           ++    KL   D+  L ++     V F   G+ +   +I+G V+    K + F  + VDD
Sbjct: 22  VFLAFAKLYIRDILDLKESGQVQGV-FFYNGHPIKQVDILGTVIGVREK-DAFYSYGVDD 81

Query: 108 GTACVGCILW--LNHLTSSYFASRHHPDVRILA--------DMATHFAAQIRVGIVVRVR 167
            T  + CI W  LN+  SS  ++   P  R L+               A++ +G ++RVR
Sbjct: 82  STGVINCICWKRLNNTKSS--SATATPSARELSLTSQLKKLQETIAQRAKLEIGDIIRVR 141

Query: 168 GKLSSYRGMVQITVSDVVVEDDP--NAEILHWLDSMRLAMKCYD 200
           G +  +RG  +I  +     DDP  N +I   L+   +  K YD
Sbjct: 142 GHIRMFRGEREIHATTYYKVDDPVCNVQIARMLELPAIYRKVYD 181

[Close]
BLAST of MELO3C014298.2 vs. TrEMBL
Match: tr|A0A1S3BLT5|A0A1S3BLT5_CUCME (CST complex subunit STN1 OS=Cucumis melo OX=3656 GN=LOC103491245 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 6.8e-115
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0 

Query: 1   MGLFMNFNWALIDLQKKAHWAKNLTQPQPEKLHIRFPMNQRQRFSFSLYQTHVKLLGFDL 60
           MGLFMNFNWALIDLQKKAHWAKNLTQPQPEKLHIRFPMNQRQRFSFSLYQTHVKLLGFDL
Sbjct: 14  MGLFMNFNWALIDLQKKAHWAKNLTQPQPEKLHIRFPMNQRQRFSFSLYQTHVKLLGFDL 73

Query: 61  NSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNH 120
           NSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNH
Sbjct: 74  NSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNH 133

Query: 121 LTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDP 180
           LTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDP
Sbjct: 134 LTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDP 193

Query: 181 NAEILHWLDSMRLAMKCYDLSPIPT 206
           NAEILHWLDSMRLAMKCYDLSPIPT
Sbjct: 194 NAEILHWLDSMRLAMKCYDLSPIPT 218

[Close]
BLAST of MELO3C014298.2 vs. TrEMBL
Match: tr|A0A0A0LNV0|A0A0A0LNV0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G223720 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 4.6e-87
Identity = 162/168 (96.43%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 38  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 97
           MNQR+RFSFSLYQTHVKLL FDLNSLNQ SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP
Sbjct: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60

Query: 98  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR 157
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH DVRIL DMATHFAAQIRVGIVVRVR
Sbjct: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR 120

Query: 158 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 206
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSP PT
Sbjct: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT 168

[Close]
BLAST of MELO3C014298.2 vs. TrEMBL
Match: tr|A0A2N9GFZ2|A0A2N9GFZ2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26201 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.8e-52
Identity = 102/159 (64.15%), Postives = 123/159 (77.36%), Query Frame = 0 

Query: 48  LYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFS 107
           LY THVKLL FDL SL Q   +SSSD +SFSR+G  +S  E VG V  RDLKPN+FLKF+
Sbjct: 7   LYNTHVKLLAFDLLSLTQTASHSSSDPISFSRRGALLSRAETVGTVTSRDLKPNKFLKFT 66

Query: 108 VDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYR 167
           +DDGT CV C+LWLNHL S YF+ R  P VR++A  A+HF+A+IR+G+V RVRG++ SYR
Sbjct: 67  IDDGTGCVVCVLWLNHLVSPYFSRRSPPSVRLIAQAASHFSAEIRLGVVARVRGRIVSYR 126

Query: 168 GMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPI 204
           G VQITVSDVVVE DPN E LHWL+ M LA KCYD+ P+
Sbjct: 127 GAVQITVSDVVVERDPNVETLHWLECMNLASKCYDVGPL 165

[Close]
BLAST of MELO3C014298.2 vs. TrEMBL
Match: tr|A0A2I4HIH0|A0A2I4HIH0_9ROSI (CST complex subunit STN1 OS=Juglans regia OX=51240 GN=LOC109018253 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.1e-51
Identity = 103/157 (65.61%), Postives = 123/157 (78.34%), Query Frame = 0 

Query: 48  LYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFS 107
           LY THVKLL FDL SL+Q   +SSSD +SFSRKG  +S  E VG V  RDLKP++FLKF+
Sbjct: 35  LYNTHVKLLAFDLLSLSQTPSHSSSDPISFSRKGALLSRAETVGTVTSRDLKPSKFLKFT 94

Query: 108 VDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYR 167
           +DDGT CVGC+LWLNHL S YFA R  PDVR++A+ A  FA++IR+G+V RVRG+++SYR
Sbjct: 95  IDDGTGCVGCVLWLNHLDSPYFARRSPPDVRLIAEAANRFASEIRLGVVARVRGRITSYR 154

Query: 168 GMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLS 202
           G VQITVSDVVVE DPNAE LH L+ M LA  CYD S
Sbjct: 155 GTVQITVSDVVVERDPNAETLHCLECMNLARNCYDAS 191

[Close]
BLAST of MELO3C014298.2 vs. TrEMBL
Match: tr|A5B811|A5B811_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0151g00570 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.3e-49
Identity = 96/161 (59.63%), Postives = 128/161 (79.50%), Query Frame = 0 

Query: 45  SFSLYQTHVKLLGFDLNSLNQN---SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFL 104
           S  LY THVKLL FDL SL Q    SSSD +SFSR+G  +S  E +G V  R+LKP++FL
Sbjct: 2   SNQLYNTHVKLLAFDLLSLTQTPSPSSSDPISFSRRGTPLSRAETLGTVTSRELKPHKFL 61

Query: 105 KFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLS 164
           KF+VDDGT CV C+LWLNHL+S YF+ R+  DVR++AD+A + A+++++G++VRVRG+++
Sbjct: 62  KFTVDDGTGCVPCVLWLNHLSSPYFSRRNPADVRLIADLAEYQASEVKLGVLVRVRGRIT 121

Query: 165 SYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSP 203
           +YRG VQITVS+V+VE DPN EILHWLD ++LA KCYD+ P
Sbjct: 122 AYRGTVQITVSNVIVERDPNMEILHWLDCIKLARKCYDVMP 162

The following BLAST results are available for this feature:
BLAST of MELO3C014298.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449339.11.0e-114100.00PREDICTED: CST complex subunit STN1 [Cucumis melo][more]
XP_004145384.17.0e-8796.43PREDICTED: CST complex subunit STN1 [Cucumis sativus] >KGN61681.1 hypothetical p... [more]
XP_022963452.14.5e-8676.67LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata][more]
XP_023553655.13.4e-7381.76CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553656.1 CST comple... [more]
XP_022967373.11.8e-6681.25CST complex subunit STN1 [Cucurbita maxima] >XP_022967374.1 CST complex subunit ... [more]
BLAST of MELO3C014298.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07130.18.6e-3954.90Nucleic acid-binding, OB-fold-like protein[more]
AT2G24490.15.3e-0424.39replicon protein A2[more]
BLAST of MELO3C014298.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LMK5|STN1_ARATH1.6e-3754.90CST complex subunit STN1 OS=Arabidopsis thaliana OX=3702 GN=STN1 PE=1 SV=1[more]
sp|Q08DB2|STN1_BOVIN3.2e-0626.83CST complex subunit STN1 OS=Bos taurus OX=9913 GN=STN1 PE=2 SV=1[more]
BLAST of MELO3C014298.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BLT5|A0A1S3BLT5_CUCME6.8e-115100.00CST complex subunit STN1 OS=Cucumis melo OX=3656 GN=LOC103491245 PE=4 SV=1[more]
tr|A0A0A0LNV0|A0A0A0LNV0_CUCSA4.6e-8796.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G223720 PE=4 SV=1[more]
tr|A0A2N9GFZ2|A0A2N9GFZ2_FAGSY2.8e-5264.15Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26201 PE=4 SV=1[more]
tr|A0A2I4HIH0|A0A2I4HIH0_9ROSI3.1e-5165.61CST complex subunit STN1 OS=Juglans regia OX=51240 GN=LOC109018253 PE=4 SV=1[more]
tr|A5B811|A5B811_VITVI1.3e-4959.63Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0151g00570 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR004365NA-bd_OB_tRNA
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0043687 post-translational protein modification
biological_process GO:0016233 telomere capping
cellular_component GO:0005575 cellular_component
cellular_component GO:0000784 nuclear chromosome, telomeric region
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014298.2.1MELO3C014298.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 47..202
e-value: 4.0E-29
score: 103.2
NoneNo IPR availablePANTHERPTHR13989:SF14CST COMPLEX SUBUNIT STN1coord: 51..199
NoneNo IPR availablePANTHERPTHR13989REPLICATION PROTEIN A-RELATEDcoord: 51..199
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-typePFAMPF01336tRNA_anti-codoncoord: 86..175
e-value: 9.5E-8
score: 31.8
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 77..195

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C014298.2Csa2G223720Cucumber (Chinese Long) v2cumedB136
MELO3C014298.2CSPI02G11130Wild cucumber (PI 183967)cpimedB136
MELO3C014298.2Cucsa.168320Cucumber (Gy14) v1cgymedB293
MELO3C014298.2CmaCh19G000280Cucurbita maxima (Rimu)cmamedB550
MELO3C014298.2CmoCh19G000250Cucurbita moschata (Rifu)cmomedB536
MELO3C014298.2Lsi05G009480Bottle gourd (USVL1VR-Ls)lsimedB382
MELO3C014298.2Cp4.1LG15g00160Cucurbita pepo (Zucchini)cpemedB274
MELO3C014298.2CsGy2G011150Cucumber (Gy14) v2cgybmedB121
MELO3C014298.2Cla006041Watermelon (97103) v1medwmB397
MELO3C014298.2ClCG07G000420Watermelon (Charleston Gray)medwcgB393
MELO3C014298.2Cla97C07G128680Watermelon (97103) v2medwmbB394
MELO3C014298.2Bhi05G000224Wax gourdmedwgoB477
MELO3C014298.2Carg09004Silver-seed gourdcarmedB0788
MELO3C014298.2CsaV3_2G013600Cucumber (Chinese Long) v3cucmedB138
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C014298.2Cucumber (Gy14) v2cgybmedB116
MELO3C014298.2Cucurbita maxima (Rimu)cmamedB393
MELO3C014298.2Cucurbita maxima (Rimu)cmamedB655
MELO3C014298.2Cucurbita moschata (Rifu)cmomedB379
MELO3C014298.2Cucurbita moschata (Rifu)cmomedB643
MELO3C014298.2Cucurbita pepo (Zucchini)cpemedB164
MELO3C014298.2Wild cucumber (PI 183967)cpimedB130
MELO3C014298.2Cucumber (Chinese Long) v2cumedB130
MELO3C014298.2Bottle gourd (USVL1VR-Ls)lsimedB026
MELO3C014298.2Watermelon (97103) v1medwmB428
MELO3C014298.2Cucumber (Chinese Long) v3cucmedB132