CsaV3_2G013600 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G013600
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionCST complex subunit STN1
Locationchr2 : 11175619 .. 11176824 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGAACAGAATATATAGTTGCCATAAAGGAGATAACCAAGCTAATCTAGGTAAGAGATCAAGAATCATAGATGATAGAAAATTACAAAGAAAAATCTGGGTAACCTCAAATTGAAAGCAAAATGATGAGAAAATTGTTAAGCTATGAAAGAGAAATAGATAGAAAGTTGAAAAATTGAAAGATAGTGATGATGGTGTTAGGACTTAGGAATAGAGTAAAGTAAGAGGTGGCCCCTCCTAAAGATATTGGCTTCGTTTGTCAGATGTCTCTTCTTTTCCCTTTGTAGGGTGTAGCCCTTTCTCAATCTTCTTAATGGGCCTATCTATGAACTTCAATTGGGCTCTCTTGATCCTTCAATAAAAAAGCCCAATGGGCTACAAATTTAAATCAACCACAATCGGAGAAACTGCACATTTGGTTTCCGATGAACCAACGGCGACGTTTCTCCTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGCTTTCGACTTAAATTCCCTCAACCAAACTTCCTCTTCTGATTCAGTTTCTTTCTCTCGCAAAGGCTATGCCGTTTCCTGTACAGAGATTGTTGGCGTTGTGGTCTTCCGTGACCTGAAACCTAACAGGTTTCTTAAATTCTCCGTTGACGATGGTACTGCCTGTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCAAGATGTTCGTATTCTGGGAGATATGGCGACCCATTTCGCAGCTCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTACACCCACTTAGCTGTAGATTCCATGGCTTTAAAATGCCATCTCTAGTCTTCTGATTTCCCTTCTTTTTTTTTCCTTTCTGAAATGCTAAAAAGATTCCACTTTTTGTTATTTACTGTACATAATTTTGCTCAACAGCTTGGCCTTCGAAATGATTATATAATAATATTGAAATTAAGTTGCCTCCACCGACTCTGTTTACTGTTTAGTTTGATGAGAATTGGTAATGTTCAATGAGGAACCTCCAACTGATGATTTTCTTTTTCTGATCAAATAGATGGTTGGAT

mRNA sequence

ATGAACCAACGGCGACGTTTCTCCTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGCTTTCGACTTAAATTCCCTCAACCAAACTTCCTCTTCTGATTCAGTTTCTTTCTCTCGCAAAGGCTATGCCGTTTCCTGTACAGAGATTGTTGGCGTTGTGGTCTTCCGTGACCTGAAACCTAACAGGTTTCTTAAATTCTCCGTTGACGATGGTACTGCCTGTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCAAGATGTTCGTATTCTGGGAGATATGGCGACCCATTTCGCAGCTCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTACACCCACTTAG

Coding sequence (CDS)

ATGAACCAACGGCGACGTTTCTCCTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGCTTTCGACTTAAATTCCCTCAACCAAACTTCCTCTTCTGATTCAGTTTCTTTCTCTCGCAAAGGCTATGCCGTTTCCTGTACAGAGATTGTTGGCGTTGTGGTCTTCCGTGACCTGAAACCTAACAGGTTTCTTAAATTCTCCGTTGACGATGGTACTGCCTGTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCAAGATGTTCGTATTCTGGGAGATATGGCGACCCATTTCGCAGCTCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTACACCCACTTAG

Protein sequence

MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT
Homology
[Close]
BLAST of CsaV3_2G013600 vs. NCBI nr
Match: XP_004145384.1 (PREDICTED: CST complex subunit STN1 [Cucumis sativus] >KGN61681.1 hypothetical protein Csa_2G223720 [Cucumis sativus])

HSP 1 Score: 341.7 bits (875), Expect = 1.5e-90
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60
           MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP
Sbjct: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60

Query: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR 120
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR
Sbjct: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR 120

Query: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT 169
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT
Sbjct: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT 168

[Close]
BLAST of CsaV3_2G013600 vs. NCBI nr
Match: XP_008449339.1 (PREDICTED: CST complex subunit STN1 [Cucumis melo])

HSP 1 Score: 329.7 bits (844), Expect = 5.8e-87
Identity = 162/168 (96.43%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60
           MNQR+RFSFSLYQTHVKLL FDLNSLNQ SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP
Sbjct: 51  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 110

Query: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR 120
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH DVRIL DMATHFAAQIRVGIVVRVR
Sbjct: 111 NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR 170

Query: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT 169
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSP PT
Sbjct: 171 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 218

[Close]
BLAST of CsaV3_2G013600 vs. NCBI nr
Match: XP_023553655.1 (CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553656.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553657.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 283.1 bits (723), Expect = 6.2e-73
Identity = 139/170 (81.76%), Postives = 153/170 (90.00%), Query Frame = 0 

Query: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQ---TSSSDSVSFSRKGYAVSCTEIVGVVVFRD 60
           MNQ+R  +FSLY TH+KLL FDLNSL Q   +SSSD+VSFSR+GYAVSC E+VGVVVFRD
Sbjct: 1   MNQQR--AFSLYHTHIKLLGFDLNSLAQSSSSSSSDAVSFSRRGYAVSCVEVVGVVVFRD 60

Query: 61  LKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVV 120
           LKPNRFL+FSVDDGT CV CILWLNHLTS YFASRH  DVRI+G+MATHFAAQIRVGIV 
Sbjct: 61  LKPNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVA 120

Query: 121 RVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTP 168
           RVRGK+SSYRG+VQITVSDVVVE+DPNAEILHWLD MRLA+KCYDLSP P
Sbjct: 121 RVRGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 168

[Close]
BLAST of CsaV3_2G013600 vs. NCBI nr
Match: XP_022963452.1 (LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata])

HSP 1 Score: 282.0 bits (720), Expect = 1.4e-72
Identity = 138/170 (81.18%), Postives = 153/170 (90.00%), Query Frame = 0 

Query: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQ---TSSSDSVSFSRKGYAVSCTEIVGVVVFRD 60
           MNQ+R  +FSLY TH+KLL FDLNSL Q   +SSSD+VSFSR+GYAVSC EIVGVVVFRD
Sbjct: 41  MNQQR--AFSLYHTHIKLLGFDLNSLTQSASSSSSDAVSFSRRGYAVSCVEIVGVVVFRD 100

Query: 61  LKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVV 120
           LKPNRFL+FSVDDGT CV CILWLNHLTS YFASRH  DVRI+G+MATHFAAQIRVGIV 
Sbjct: 101 LKPNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVA 160

Query: 121 RVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTP 168
           RVRG++SSYRG+VQ+TVSDVVVE+DPNAEILHWLD MRLA+KCYDLSP P
Sbjct: 161 RVRGRVSSYRGVVQMTVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 208

[Close]
BLAST of CsaV3_2G013600 vs. NCBI nr
Match: XP_022967373.1 (CST complex subunit STN1 [Cucurbita maxima] >XP_022967374.1 CST complex subunit STN1 [Cucurbita maxima] >XP_022967375.1 CST complex subunit STN1 [Cucurbita maxima])

HSP 1 Score: 253.4 bits (646), Expect = 5.2e-64
Identity = 127/157 (80.89%), Postives = 140/157 (89.17%), Query Frame = 0 

Query: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQ---TSSSDSVSFSRKGYAVSCTEIVGVVVFRD 60
           MNQ+R  +FSLY TH+KLL FDLNSL Q   +SSSD+VSFSR+G+AVSC EIVGVVV RD
Sbjct: 19  MNQQR--AFSLYHTHIKLLGFDLNSLTQSSSSSSSDAVSFSRRGFAVSCAEIVGVVVSRD 78

Query: 61  LKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVV 120
           LKPNRFL+FSVDDGT CV CILWLNHLTS YFASRH  DVRI+G+MATHFAAQIRVGIV 
Sbjct: 79  LKPNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVA 138

Query: 121 RVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSM 155
           RVRGK+SSYRG+VQITVSDVVVE+DPNAEILHWLD M
Sbjct: 139 RVRGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCM 173

[Close]
BLAST of CsaV3_2G013600 vs. TAIR10
Match: AT1G07130.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 157.5 bits (397), Expect = 7.1e-39
Identity = 84/153 (54.90%), Postives = 104/153 (67.97%), Query Frame = 0 

Query: 10  SLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSV 69
           SL  TH KL+A D+  L Q S ++S SFS  G A VS  EIVG +V RDL P +FLKF V
Sbjct: 4   SLQSTHAKLVARDIQRLTQ-SPTESNSFSLLGGACVSRVEIVGTIVSRDLTP-KFLKFGV 63

Query: 70  DDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYRG 129
           DDGT CV C++WLN LTSSYF+      + +L   A   AAQIR+G V RVRG++ SYRG
Sbjct: 64  DDGTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSYRG 123

Query: 130 MVQITVSDVVVEDDPNAEILHWLDSMRLAMKCY 162
           ++QIT +  V E DPNAEILHWL+ ++L   CY
Sbjct: 124 VMQITANVAVAERDPNAEILHWLECLKLGQSCY 154

[Close]
BLAST of CsaV3_2G013600 vs. TAIR10
Match: AT2G24490.1 (replicon protein A2)

HSP 1 Score: 43.1 bits (100), Expect = 2.0e-04
Identity = 31/123 (25.20%), Postives = 54/123 (43.90%), Query Frame = 0 

Query: 30  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYF 89
           SS +       G +++   +VG+V  +D      ++F++DDGT  + C  W+    S  F
Sbjct: 56  SSGEKSGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWV----SETF 115

Query: 90  ASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILH 149
            +R  + V              R G  VR+ G L +++G  Q+ V  V    D N    H
Sbjct: 116 DAREMESV--------------RDGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFH 160

Query: 150 WLD 153
           +++
Sbjct: 176 YIE 160

[Close]
BLAST of CsaV3_2G013600 vs. Swiss-Prot
Match: sp|Q9LMK5|STN1_ARATH (CST complex subunit STN1 OS=Arabidopsis thaliana OX=3702 GN=STN1 PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-37
Identity = 84/153 (54.90%), Postives = 104/153 (67.97%), Query Frame = 0 

Query: 10  SLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSV 69
           SL  TH KL+A D+  L Q S ++S SFS  G A VS  EIVG +V RDL P +FLKF V
Sbjct: 4   SLQSTHAKLVARDIQRLTQ-SPTESNSFSLLGGACVSRVEIVGTIVSRDLTP-KFLKFGV 63

Query: 70  DDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYRG 129
           DDGT CV C++WLN LTSSYF+      + +L   A   AAQIR+G V RVRG++ SYRG
Sbjct: 64  DDGTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSYRG 123

Query: 130 MVQITVSDVVVEDDPNAEILHWLDSMRLAMKCY 162
           ++QIT +  V E DPNAEILHWL+ ++L   CY
Sbjct: 124 VMQITANVAVAERDPNAEILHWLECLKLGQSCY 154

[Close]
BLAST of CsaV3_2G013600 vs. Swiss-Prot
Match: sp|Q08DB2|STN1_BOVIN (CST complex subunit STN1 OS=Bos taurus OX=9913 GN=STN1 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 41/162 (25.31%), Postives = 73/162 (45.06%), Query Frame = 0 

Query: 11  LYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDD 70
           ++    KL   D+  L ++     V F   G+ +   +I+G V+    K + F  + VDD
Sbjct: 22  VFLAFAKLYIRDILDLKESGQVQGV-FFYNGHPIKQVDILGTVIGVREK-DAFYSYGVDD 81

Query: 71  GTACVGCILWL---NHLTSSYFASRHHQDVRILGDM-----ATHFAAQIRVGIVVRVRGK 130
            T  + CI W    N  +SS  A+   +++ +   +          A++ +G ++RVRG 
Sbjct: 82  STGVINCICWKRLNNTKSSSATATPSARELSLTSQLKKLQETIAQRAKLEIGDIIRVRGH 141

Query: 131 LSSYRGMVQITVSDVVVEDDP--NAEILHWLDSMRLAMKCYD 163
           +  +RG  +I  +     DDP  N +I   L+   +  K YD
Sbjct: 142 IRMFRGEREIHATTYYKVDDPVCNVQIARMLELPAIYRKVYD 181

[Close]
BLAST of CsaV3_2G013600 vs. TrEMBL
Match: tr|A0A0A0LNV0|A0A0A0LNV0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G223720 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 9.7e-91
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60
           MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP
Sbjct: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60

Query: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR 120
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR
Sbjct: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR 120

Query: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT 169
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT
Sbjct: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT 168

[Close]
BLAST of CsaV3_2G013600 vs. TrEMBL
Match: tr|A0A1S3BLT5|A0A1S3BLT5_CUCME (CST complex subunit STN1 OS=Cucumis melo OX=3656 GN=LOC103491245 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 3.8e-87
Identity = 162/168 (96.43%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60
           MNQR+RFSFSLYQTHVKLL FDLNSLNQ SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP
Sbjct: 51  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 110

Query: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR 120
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH DVRIL DMATHFAAQIRVGIVVRVR
Sbjct: 111 NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR 170

Query: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT 169
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSP PT
Sbjct: 171 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 218

[Close]
BLAST of CsaV3_2G013600 vs. TrEMBL
Match: tr|A0A2N9GFZ2|A0A2N9GFZ2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26201 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 8.9e-52
Identity = 102/158 (64.56%), Postives = 121/158 (76.58%), Query Frame = 0 

Query: 11  LYQTHVKLLAFDLNSLNQT---SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFS 70
           LY THVKLLAFDL SL QT   SSSD +SFSR+G  +S  E VG V  RDLKPN+FLKF+
Sbjct: 7   LYNTHVKLLAFDLLSLTQTASHSSSDPISFSRRGALLSRAETVGTVTSRDLKPNKFLKFT 66

Query: 71  VDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYR 130
           +DDGT CV C+LWLNHL S YF+ R    VR++   A+HF+A+IR+G+V RVRG++ SYR
Sbjct: 67  IDDGTGCVVCVLWLNHLVSPYFSRRSPPSVRLIAQAASHFSAEIRLGVVARVRGRIVSYR 126

Query: 131 GMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSP 166
           G VQITVSDVVVE DPN E LHWL+ M LA KCYD+ P
Sbjct: 127 GAVQITVSDVVVERDPNVETLHWLECMNLASKCYDVGP 164

[Close]
BLAST of CsaV3_2G013600 vs. TrEMBL
Match: tr|A0A2I4HIH0|A0A2I4HIH0_9ROSI (CST complex subunit STN1 OS=Juglans regia OX=51240 GN=LOC109018253 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 5.7e-51
Identity = 103/157 (65.61%), Postives = 122/157 (77.71%), Query Frame = 0 

Query: 11  LYQTHVKLLAFDLNSLNQT---SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFS 70
           LY THVKLLAFDL SL+QT   SSSD +SFSRKG  +S  E VG V  RDLKP++FLKF+
Sbjct: 35  LYNTHVKLLAFDLLSLSQTPSHSSSDPISFSRKGALLSRAETVGTVTSRDLKPSKFLKFT 94

Query: 71  VDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYR 130
           +DDGT CVGC+LWLNHL S YFA R   DVR++ + A  FA++IR+G+V RVRG+++SYR
Sbjct: 95  IDDGTGCVGCVLWLNHLDSPYFARRSPPDVRLIAEAANRFASEIRLGVVARVRGRITSYR 154

Query: 131 GMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLS 165
           G VQITVSDVVVE DPNAE LH L+ M LA  CYD S
Sbjct: 155 GTVQITVSDVVVERDPNAETLHCLECMNLARNCYDAS 191

[Close]
BLAST of CsaV3_2G013600 vs. TrEMBL
Match: tr|A5B811|A5B811_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0151g00570 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.2e-50
Identity = 97/161 (60.25%), Postives = 129/161 (80.12%), Query Frame = 0 

Query: 8   SFSLYQTHVKLLAFDLNSLNQT---SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFL 67
           S  LY THVKLLAFDL SL QT   SSSD +SFSR+G  +S  E +G V  R+LKP++FL
Sbjct: 2   SNQLYNTHVKLLAFDLLSLTQTPSPSSSDPISFSRRGTPLSRAETLGTVTSRELKPHKFL 61

Query: 68  KFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLS 127
           KF+VDDGT CV C+LWLNHL+S YF+ R+  DVR++ D+A + A+++++G++VRVRG+++
Sbjct: 62  KFTVDDGTGCVPCVLWLNHLSSPYFSRRNPADVRLIADLAEYQASEVKLGVLVRVRGRIT 121

Query: 128 SYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSP 166
           +YRG VQITVS+V+VE DPN EILHWLD ++LA KCYD+ P
Sbjct: 122 AYRGTVQITVSNVIVERDPNMEILHWLDCIKLARKCYDVMP 162

The following BLAST results are available for this feature:
BLAST of CsaV3_2G013600 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004145384.11.5e-90100.00PREDICTED: CST complex subunit STN1 [Cucumis sativus] >KGN61681.1 hypothetical p... [more]
XP_008449339.15.8e-8796.43PREDICTED: CST complex subunit STN1 [Cucumis melo][more]
XP_023553655.16.2e-7381.76CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553656.1 CST comple... [more]
XP_022963452.11.4e-7281.18LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata][more]
XP_022967373.15.2e-6480.89CST complex subunit STN1 [Cucurbita maxima] >XP_022967374.1 CST complex subunit ... [more]
BLAST of CsaV3_2G013600 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07130.17.1e-3954.90Nucleic acid-binding, OB-fold-like protein[more]
AT2G24490.12.0e-0425.20replicon protein A2[more]
BLAST of CsaV3_2G013600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LMK5|STN1_ARATH1.3e-3754.90CST complex subunit STN1 OS=Arabidopsis thaliana OX=3702 GN=STN1 PE=1 SV=1[more]
sp|Q08DB2|STN1_BOVIN1.2e-0625.31CST complex subunit STN1 OS=Bos taurus OX=9913 GN=STN1 PE=2 SV=1[more]
BLAST of CsaV3_2G013600 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LNV0|A0A0A0LNV0_CUCSA9.7e-91100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G223720 PE=4 SV=1[more]
tr|A0A1S3BLT5|A0A1S3BLT5_CUCME3.8e-8796.43CST complex subunit STN1 OS=Cucumis melo OX=3656 GN=LOC103491245 PE=4 SV=1[more]
tr|A0A2N9GFZ2|A0A2N9GFZ2_FAGSY8.9e-5264.56Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26201 PE=4 SV=1[more]
tr|A0A2I4HIH0|A0A2I4HIH0_9ROSI5.7e-5165.61CST complex subunit STN1 OS=Juglans regia OX=51240 GN=LOC109018253 PE=4 SV=1[more]
tr|A5B811|A5B811_VITVI2.2e-5060.25Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0151g00570 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR004365NA-bd_OB_tRNA
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0043687 post-translational protein modification
biological_process GO:0016233 telomere capping
cellular_component GO:0005575 cellular_component
cellular_component GO:0000784 nuclear chromosome, telomeric region
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G013600.1CsaV3_2G013600.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 10..165
e-value: 3.0E-30
score: 106.9
NoneNo IPR availablePANTHERPTHR13989:SF14CST COMPLEX SUBUNIT STN1coord: 14..162
NoneNo IPR availablePANTHERPTHR13989REPLICATION PROTEIN A-RELATEDcoord: 14..162
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-typePFAMPF01336tRNA_anti-codoncoord: 49..138
e-value: 6.2E-8
score: 32.4
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 40..158

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G013600CSPI02G11130Wild cucumber (PI 183967)cpicucB080
CsaV3_2G013600Cucsa.168320Cucumber (Gy14) v1cgycucB269
CsaV3_2G013600CmaCh19G000280Cucurbita maxima (Rimu)cmacucB0613
CsaV3_2G013600CmoCh19G000250Cucurbita moschata (Rifu)cmocucB0597
CsaV3_2G013600Cp4.1LG15g00160Cucurbita pepo (Zucchini)cpecucB0296
CsaV3_2G013600CsGy2G011150Cucumber (Gy14) v2cgybcucB064
CsaV3_2G013600Cla006041Watermelon (97103) v1cucwmB135
CsaV3_2G013600MELO3C014298Melon (DHL92) v3.5.1cucmeB145
CsaV3_2G013600ClCG07G000420Watermelon (Charleston Gray)cucwcgB166
CsaV3_2G013600Lsi05G009480Bottle gourd (USVL1VR-Ls)cuclsiB138
CsaV3_2G013600MELO3C014298.2Melon (DHL92) v3.6.1cucmedB138
CsaV3_2G013600Cla97C07G128680Watermelon (97103) v2cucwmbB154
CsaV3_2G013600Bhi05G000224Wax gourdcucwgoB160
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G013600Silver-seed gourdcarcucB0785
CsaV3_2G013600Cucumber (Gy14) v2cgybcucB069
CsaV3_2G013600Cucurbita maxima (Rimu)cmacucB0610
CsaV3_2G013600Cucurbita moschata (Rifu)cmocucB0418
CsaV3_2G013600Cucurbita pepo (Zucchini)cpecucB0152
CsaV3_2G013600Cucurbita pepo (Zucchini)cpecucB0294
CsaV3_2G013600Cucurbita pepo (Zucchini)cpecucB0745
CsaV3_2G013600Wild cucumber (PI 183967)cpicucB086
CsaV3_2G013600Melon (DHL92) v3.5.1cucmeB139
CsaV3_2G013600Melon (DHL92) v3.6.1cucmedB132
CsaV3_2G013600Watermelon (Charleston Gray)cucwcgB160
CsaV3_2G013600Watermelon (97103) v1cucwmB183
CsaV3_2G013600Watermelon (97103) v2cucwmbB147
CsaV3_2G013600Wax gourdcucwgoB215