Csa2G223720 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G223720
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	CST complex subunit STN1-like protein; contains IPR012340 (Nucleic acid-binding, OB-fold)
Location	Chr2 : 10866995 .. 10867688 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTTCCGATGAACCAACGGCGACGTTTCTCCTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGCTTTCGACTTAAATTCCCTCAACCAAACTTCCTCTTCTGATTCAGTTTCTTTCTCTCGCAAAGGCTATGCCGTTTCCTGTACAGAGATTGTTGGCGTTGTGGTCTTCCGTGACCTGAAACCTAACAGGTTTCTTAAATTCTCCGTTGACGATGGTACTGCCTGTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCAAGATGTTCGTATTCTGGGAGATATGGCGACCCATTTCGCAGCTCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTACACCCACTTAGCTGTAGATTCCATGGCTTTAAAATGCCATCTCTAGTCTTCTGATTTCCCTTCTTTTTTTTTCCTTTCTGAAATGCTAAAAAGATTCCACTTTTTGTTATTTACTGTACATAATTTTGCTCAACAGCTTGGCCTTCGAAATGATTATATAATAATATTGAAATTAAGTTGCCTCCACCGA

mRNA sequence

ATGAACCAACGGCGACGTTTCTCCTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGCTTTCGACTTAAATTCCCTCAACCAAACTTCCTCTTCTGATTCAGTTTCTTTCTCTCGCAAAGGCTATGCCGTTTCCTGTACAGAGATTGTTGGCGTTGTGGTCTTCCGTGACCTGAAACCTAACAGGTTTCTTAAATTCTCCGTTGACGATGGTACTGCCTGTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCAAGATGTTCGTATTCTGGGAGATATGGCGACCCATTTCGCAGCTCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTACACCCACTTAG

Coding sequence (CDS)

ATGAACCAACGGCGACGTTTCTCCTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGCTTTCGACTTAAATTCCCTCAACCAAACTTCCTCTTCTGATTCAGTTTCTTTCTCTCGCAAAGGCTATGCCGTTTCCTGTACAGAGATTGTTGGCGTTGTGGTCTTCCGTGACCTGAAACCTAACAGGTTTCTTAAATTCTCCGTTGACGATGGTACTGCCTGTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCAAGATGTTCGTATTCTGGGAGATATGGCGACCCATTTCGCAGCTCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTACACCCACTTAG

Protein sequence

MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT*

Homology

[Close]

BLAST of Csa2G223720 vs. Swiss-Prot
Match: STN1_ARATH (CST complex subunit STN1 OS=Arabidopsis thaliana GN=STN1 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.8e-37
Identity = 84/153 (54.90%), Postives = 102/153 (66.67%), Query Frame = 1


Query: 10  SLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSV 69
           SL  TH KL+A D+  L Q S ++S SFS  G A VS  EIVG +V RDL P +FLKF V
Sbjct: 4   SLQSTHAKLVARDIQRLTQ-SPTESNSFSLLGGACVSRVEIVGTIVSRDLTP-KFLKFGV 63

Query: 70  DDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYRG 129
           DDGT CV C++WLN LTSSYF+      + +L   A   AAQIR+G V RVRG++ SYRG
Sbjct: 64  DDGTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSYRG 123

Query: 130 MVQITVSDVVVEDDPNAEILHWLDSMRLAMKCY 162
           ++QIT +  V E DPNAEILHWL+ ++L   CY
Sbjct: 124 VMQITANVAVAERDPNAEILHWLECLKLGQSCY 154

[Close]

BLAST of Csa2G223720 vs. Swiss-Prot
Match: STN1_BOVIN (CST complex subunit STN1 OS=Bos taurus GN=OBFC1 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.7e-06
Identity = 41/162 (25.31%), Postives = 72/162 (44.44%), Query Frame = 1


Query: 11  LYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDD 70
           ++    KL   D+  L ++     V F   G+ +   +I+G V+    K + F  + VDD
Sbjct: 22  VFLAFAKLYIRDILDLKESGQVQGVFFYN-GHPIKQVDILGTVIGVREK-DAFYSYGVDD 81

Query: 71  GTACVGCILWL---NHLTSSYFASRHHQDVRILGDM-----ATHFAAQIRVGIVVRVRGK 130
            T  + CI W    N  +SS  A+   +++ +   +          A++ +G ++RVRG 
Sbjct: 82  STGVINCICWKRLNNTKSSSATATPSARELSLTSQLKKLQETIAQRAKLEIGDIIRVRGH 141

Query: 131 LSSYRGMVQITVSDVVVEDDP--NAEILHWLDSMRLAMKCYD 163
           +  +RG  +I  +     DDP  N +I   L+   +  K YD
Sbjct: 142 IRMFRGEREIHATTYYKVDDPVCNVQIARMLELPAIYRKVYD 181

[Close]

BLAST of Csa2G223720 vs. TrEMBL
Match: A0A0A0LNV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G223720 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 2.6e-90
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1


Query: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60
           MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP
Sbjct: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60

Query: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR 120
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR
Sbjct: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR 120

Query: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT 169
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT
Sbjct: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT 168

[Close]

BLAST of Csa2G223720 vs. TrEMBL
Match: A5B811_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0151g00570 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.7e-50
Identity = 97/161 (60.25%), Postives = 129/161 (80.12%), Query Frame = 1


Query: 8   SFSLYQTHVKLLAFDLNSLNQT---SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFL 67
           S  LY THVKLLAFDL SL QT   SSSD +SFSR+G  +S  E +G V  R+LKP++FL
Sbjct: 2   SNQLYNTHVKLLAFDLLSLTQTPSPSSSDPISFSRRGTPLSRAETLGTVTSRELKPHKFL 61

Query: 68  KFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLS 127
           KF+VDDGT CV C+LWLNHL+S YF+ R+  DVR++ D+A + A+++++G++VRVRG+++
Sbjct: 62  KFTVDDGTGCVPCVLWLNHLSSPYFSRRNPADVRLIADLAEYQASEVKLGVLVRVRGRIT 121

Query: 128 SYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSP 166
           +YRG VQITVS+V+VE DPN EILHWLD ++LA KCYD+ P
Sbjct: 122 AYRGTVQITVSNVIVERDPNMEILHWLDCIKLARKCYDVMP 162

[Close]

BLAST of Csa2G223720 vs. TrEMBL
Match: M5VZA5_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020896mg PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-48
Identity = 100/157 (63.69%), Postives = 119/157 (75.80%), Query Frame = 1


Query: 10  SLYQTHVKLLAFDLNSLNQT----SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLK 69
           SLY THVKLLAFDL +L QT    SSSD VSFSR    +S  E VG V  RDLKPN+FL+
Sbjct: 4   SLYNTHVKLLAFDLLTLTQTSSSSSSSDPVSFSRNSALLSRAETVGTVTSRDLKPNKFLR 63

Query: 70  FSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSS 129
           F++DDGT CV CILWLN L+S YF+ R+  DVR++   A HFAA+I++G+V RVRGK++S
Sbjct: 64  FTIDDGTGCVNCILWLNQLSSPYFSRRNPADVRLIAQTAQHFAAEIKLGVVARVRGKITS 123

Query: 130 YRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYD 163
           YRG+ QIT  DVVVE DPN EILHWLD MRLA K Y+
Sbjct: 124 YRGVTQITALDVVVERDPNVEILHWLDCMRLARKVYN 160

[Close]

BLAST of Csa2G223720 vs. TrEMBL
Match: B9H8B6_POPTR (OB-fold nucleic acid binding domain-containing family protein OS=Populus trichocarpa GN=POPTR_0005s23460g PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 9.4e-48
Identity = 92/156 (58.97%), Postives = 122/156 (78.21%), Query Frame = 1


Query: 11  LYQTHVKLLAFDLNSLNQT---SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFS 70
           L  THVKLLAFDL SL QT   S+ D ++F+RK   +S TEI+GV+  R+LKPN+FLKF+
Sbjct: 5   LQNTHVKLLAFDLLSLAQTPSFSTYDPITFTRKNTTISRTEILGVITSRELKPNKFLKFT 64

Query: 71  VDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYR 130
           +DDGT CV C+LWLN LTS YF+ R+  +V+++ DMA HFA++I++G+V RVRG+++ YR
Sbjct: 65  IDDGTGCVTCVLWLNQLTSPYFSRRNPANVKLIADMAAHFASEIKIGLVARVRGRIAGYR 124

Query: 131 GMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDL 164
           G VQ+TVSDVVVE DPN E  HWLD +RLA  CY++
Sbjct: 125 GAVQVTVSDVVVERDPNVEAFHWLDCIRLARNCYNV 160

[Close]

BLAST of Csa2G223720 vs. TrEMBL
Match: W9RR47_9ROSA (CST complex subunit STN1 OS=Morus notabilis GN=L484_002048 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.4e-46
Identity = 97/155 (62.58%), Postives = 117/155 (75.48%), Query Frame = 1


Query: 11  LYQTHVKLLAFDLNSLNQTSSSDS--VSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSV 70
           LY THVKLLA DL SL    SS+   VSFSR G  +S  E VG V+ RDL+P ++LKF V
Sbjct: 5   LYNTHVKLLASDLLSLTPVPSSNPNPVSFSRNGTLLSRAETVGTVISRDLRPEKYLKFVV 64

Query: 71  DDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYRG 130
           DDGTACVGCILWLNHL+S YF+ R   DVRI+   A  FA+++++G V RVRG+++ YR 
Sbjct: 65  DDGTACVGCILWLNHLSSPYFSRRCAPDVRIIAQAANRFASEVKLGAVARVRGRITMYRS 124

Query: 131 MVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDL 164
            VQITVSDVVV+ DPNAEILHWLD MRLA +CYD+
Sbjct: 125 EVQITVSDVVVDRDPNAEILHWLDCMRLARRCYDV 159

[Close]

BLAST of Csa2G223720 vs. TAIR10
Match: AT1G07130.1 (AT1G07130.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 155.6 bits (392), Expect = 2.7e-38
Identity = 84/153 (54.90%), Postives = 102/153 (66.67%), Query Frame = 1


Query: 10  SLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSV 69
           SL  TH KL+A D+  L Q S ++S SFS  G A VS  EIVG +V RDL P +FLKF V
Sbjct: 4   SLQSTHAKLVARDIQRLTQ-SPTESNSFSLLGGACVSRVEIVGTIVSRDLTP-KFLKFGV 63

Query: 70  DDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYRG 129
           DDGT CV C++WLN LTSSYF+      + +L   A   AAQIR+G V RVRG++ SYRG
Sbjct: 64  DDGTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSYRG 123

Query: 130 MVQITVSDVVVEDDPNAEILHWLDSMRLAMKCY 162
           ++QIT +  V E DPNAEILHWL+ ++L   CY
Sbjct: 124 VMQITANVAVAERDPNAEILHWLECLKLGQSCY 154

[Close]

BLAST of Csa2G223720 vs. NCBI nr
Match: gi|449455286|ref|XP_004145384.1| (PREDICTED: CST complex subunit STN1 [Cucumis sativus])

HSP 1 Score: 339.3 bits (869), Expect = 3.7e-90
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1


Query: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60
           MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP
Sbjct: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60

Query: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR 120
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR
Sbjct: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR 120

Query: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT 169
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT
Sbjct: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT 168

[Close]

BLAST of Csa2G223720 vs. NCBI nr
Match: gi|659096884|ref|XP_008449339.1| (PREDICTED: CST complex subunit STN1 [Cucumis melo])

HSP 1 Score: 327.4 bits (838), Expect = 1.5e-86
Identity = 162/168 (96.43%), Postives = 163/168 (97.02%), Query Frame = 1


Query: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60
           MNQR+RFSFSLYQTHVKLL FDLNSLNQ SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP
Sbjct: 51  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 110

Query: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR 120
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH DVRIL DMATHFAAQIRVGIVVRVR
Sbjct: 111 NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR 170

Query: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT 169
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSP PT
Sbjct: 171 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 218

[Close]

BLAST of Csa2G223720 vs. NCBI nr
Match: gi|1009182051|ref|XP_015872500.1| (PREDICTED: CST complex subunit STN1 [Ziziphus jujuba])

HSP 1 Score: 208.8 bits (530), Expect = 7.6e-51
Identity = 102/154 (66.23%), Postives = 122/154 (79.22%), Query Frame = 1


Query: 11  LYQTHVKLLAFDLNSLNQTSS-SDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVD 70
           L  THVKLLAFDL SL QT S SD +SFSRKG  +S  E VGVV  RDLKPN+FLKF+VD
Sbjct: 5   LCNTHVKLLAFDLLSLTQTPSFSDPISFSRKGILLSRLETVGVVTSRDLKPNKFLKFTVD 64

Query: 71  DGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYRGM 130
           DGT C+ CILWLNHL S YF+ RH  DVR++ + A  FAA +++G+V RVRG+++S+RG 
Sbjct: 65  DGTGCITCILWLNHLNSPYFSRRHPSDVRLIANAADRFAAHVKLGVVARVRGRITSFRGE 124

Query: 131 VQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDL 164
           +QITVSDVVVE DPNAEILHWLD +RLA  CYD+
Sbjct: 125 LQITVSDVVVERDPNAEILHWLDCVRLARNCYDV 158

[Close]

BLAST of Csa2G223720 vs. NCBI nr
Match: gi|657954755|ref|XP_008368825.1| (PREDICTED: CST complex subunit STN1 [Malus domestica])

HSP 1 Score: 206.8 bits (525), Expect = 2.9e-50
Identity = 101/158 (63.92%), Postives = 122/158 (77.22%), Query Frame = 1


Query: 10  SLYQTHVKLLAFDLNSLNQT--SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFS 69
           SLY THVKLLAFDLNSL QT  SSSD +SFSR G  +S  E VG V  RDLKPN+FL+F+
Sbjct: 4   SLYNTHVKLLAFDLNSLTQTXSSSSDPISFSRNGALLSRAETVGTVTSRDLKPNKFLRFT 63

Query: 70  VDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYR 129
           +DDGT CV CILWLN L S YF+ R   DVR++   A  FAA+I++G+V RVRGK++SYR
Sbjct: 64  IDDGTGCVSCILWLNQLXSPYFSRRSPPDVRLIAQHALRFAAEIKLGVVARVRGKITSYR 123

Query: 130 GMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSP 166
           G+ QITVSDVV+E DPN E+LHWLD +RLA K Y++ P
Sbjct: 124 GVTQITVSDVVIERDPNVEMLHWLDCIRLARKVYNIIP 161

[Close]

BLAST of Csa2G223720 vs. NCBI nr
Match: gi|645259484|ref|XP_008235383.1| (PREDICTED: CST complex subunit STN1 [Prunus mume])

HSP 1 Score: 206.1 bits (523), Expect = 4.9e-50
Identity = 102/160 (63.75%), Postives = 123/160 (76.88%), Query Frame = 1


Query: 10  SLYQTHVKLLAFDLNSLNQT----SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLK 69
           SLY THVKLLAFDL +L+QT    SSSD VSFSR G  +S  E VG V  RDLKPN+FL+
Sbjct: 4   SLYNTHVKLLAFDLLTLSQTSSPSSSSDPVSFSRNGALLSRAETVGTVTSRDLKPNKFLR 63

Query: 70  FSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSS 129
           F++DDGT CV CILWLN L+S YF+ R+  DVR++   A HFAA+I++G+V RVRGK++S
Sbjct: 64  FTIDDGTGCVNCILWLNQLSSPYFSRRNPADVRLIAQTAQHFAAEIKLGVVARVRGKITS 123

Query: 130 YRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSP 166
           YRG+ QIT  DVVVE DPN EILHWLD MRLA K Y++ P
Sbjct: 124 YRGVTQITALDVVVERDPNVEILHWLDCMRLARKVYNVVP 163

The following BLAST results are available for this feature:

BLAST of Csa2G223720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
STN1_ARATH	4.8e-37	54.90	CST complex subunit STN1 OS=Arabidopsis thaliana GN=STN1 PE=1 SV=1	[more]
STN1_BOVIN	5.7e-06	25.31	CST complex subunit STN1 OS=Bos taurus GN=OBFC1 PE=2 SV=1	[more]

BLAST of Csa2G223720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNV0_CUCSA	2.6e-90	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G223720 PE=4 SV=1	[more]
A5B811_VITVI	7.7e-50	60.25	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0151g00570 PE=4 SV=...	[more]
M5VZA5_PRUPE	1.1e-48	63.69	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020896mg PE=4 S...	[more]
B9H8B6_POPTR	9.4e-48	58.97	OB-fold nucleic acid binding domain-containing family protein OS=Populus trichoc...	[more]
W9RR47_9ROSA	1.4e-46	62.58	CST complex subunit STN1 OS=Morus notabilis GN=L484_002048 PE=4 SV=1	[more]

BLAST of Csa2G223720 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07130.1	2.7e-38	54.90	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of Csa2G223720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455286\|ref\|XP_004145384.1\|	3.7e-90	100.00	PREDICTED: CST complex subunit STN1 [Cucumis sativus]	[more]
gi\|659096884\|ref\|XP_008449339.1\|	1.5e-86	96.43	PREDICTED: CST complex subunit STN1 [Cucumis melo]	[more]
gi\|1009182051\|ref\|XP_015872500.1\|	7.6e-51	66.23	PREDICTED: CST complex subunit STN1 [Ziziphus jujuba]	[more]
gi\|657954755\|ref\|XP_008368825.1\|	2.9e-50	63.92	PREDICTED: CST complex subunit STN1 [Malus domestica]	[more]
gi\|645259484\|ref\|XP_008235383.1\|	4.9e-50	63.75	PREDICTED: CST complex subunit STN1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004365	NA-bd_OB_tRNA
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0043687	post-translational protein modification
biological_process	GO:0016233	telomere capping
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000784	nuclear chromosome, telomeric region
molecular_function	GO:0003676	nucleic acid binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU113952	cucumber EST collection version 3.0	transcribed_cluster
CU162084	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G223720.1	Csa2G223720.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU162084	CU162084	transcribed_cluster
CU113952	CU113952	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004365	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	PFAM	PF01336	tRNA_anti-codon	coord: 49..138 score: 5.
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 26..159 score: 4.1
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 40..158 score: 2.4
None	No IPR available	PANTHER	PTHR13989	REPLICATION PROTEIN A-RELATED	coord: 15..167 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G223720	Cla006041	Watermelon (97103) v1	cuwmB121
Csa2G223720	MELO3C014298	Melon (DHL92) v3.5.1	cumeB141
Csa2G223720	ClCG07G000420	Watermelon (Charleston Gray)	cuwcgB159
Csa2G223720	Lsi05G009480	Bottle gourd (USVL1VR-Ls)	culsiB126
Csa2G223720	MELO3C014298.2	Melon (DHL92) v3.6.1	cumedB136
Csa2G223720	Cla97C07G128680	Watermelon (97103) v2	cuwmbB153
Csa2G223720	Bhi05G000224	Wax gourd	cuwgoB153
Csa2G223720	CSPI02G11130	Wild cucumber (PI 183967)	cpicuB065
Csa2G223720	Cucsa.168320	Cucumber (Gy14) v1	cgycuB256
Csa2G223720	CmoCh19G000250	Cucurbita moschata (Rifu)	cmocuB499
Csa2G223720	CsGy2G011150	Cucumber (Gy14) v2	cgybcuB056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G223720	Melon (DHL92) v3.6.1	cumedB130
Csa2G223720	Silver-seed gourd	carcuB0765
Csa2G223720	Watermelon (97103) v2	cuwmbB146
Csa2G223720	Wax gourd	cuwgoB210
Csa2G223720	Cucurbita maxima (Rimu)	cmacuB593
Csa2G223720	Melon (DHL92) v3.5.1	cumeB138
Csa2G223720	Watermelon (Charleston Gray)	cuwcgB152
Csa2G223720	Watermelon (97103) v1	cuwmB171
Csa2G223720	Cucurbita pepo (Zucchini)	cpecuB236
Csa2G223720	Cucumber (Gy14) v2	cgybcuB064