MELO3C013618 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013618
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_91
Location	chr11 : 18282439 .. 18283208 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTACAAAAATTCCACTCTCCACATATTAATATTAATATTCATATTCATATTATTTAGTTTATTAATACGCCGTCGCTGCTTGCCTCCTCAAACAAAATTGCCTTCTACTTTTCTCTTACGCTCTAATTTCTAATTTTCCCTCAAAACACTTTCTCTAATACATACTTTTTCAATATGAAGAAATCGGGTTTCATCGCCGCCTCCGTTGCCGCCGCATCCGCCTCCGCCGCCGTCGCCTCCCCTTCTTCCTCTACCCTTGTTTGCAACTCAAAAGTTCAATTCCCTCGCCAGGTTTACCATTTTCCCTCTTTAAAAAATCAATCCTCTAAGAATTTGAACCCTCGGTTTTTTTGTTTGATCCTGTAAATTTCTTGTCTTTTGAGATTTGGGATGTTTTAATTATGCAGGAGGGAAAGGAAGGAGAGAACTCTTCTTCATCGTCTTCCACCGATAAATTTGCTCCTAAATTTGATGGATTGAGATTTATTGAAACTCTTGTAACGGCTCATAGATGAACTGCGCCGGCGACGGCGACGTTCGTGGTTGCATTTGCGGAGAAGGGACCCACCGTGGCCGCAACTTTGTATGTTGCCTACCTTTATTGTTAATTCTTCTTCTTCTTCTTCTTCTTCTTTTTTAATTTATGTTGTCAAAAGAAATGATAGATGCTAGGAAATATTGTTGGAAGTCTCTTATTTTGGACATTAAAGAATAATAATTTTTAGTTTATATTTTTCATTATTTTAATGAAAAATTAGCAAAAGATGG

mRNA sequence

AATTACAAAAATTCCACTCTCCACATATTAATATTAATATTCATATTCATATTATTTAGTTTATTAATACGCCGTCGCTGCTTGCCTCCTCAAACAAAATTGCCTTCTACTTTTCTCTTACGCTCTAATTTCTAATTTTCCCTCAAAACACTTTCTCTAATACATACTTTTTCAATATGAAGAAATCGGGTTTCATCGCCGCCTCCGTTGCCGCCGCATCCGCCTCCGCCGCCGTCGCCTCCCCTTCTTCCTCTACCCTTGTTTGCAACTCAAAAGTTCAATTCCCTCGCCAGGAGGGAAAGGAAGGAGAGAACTCTTCTTCATCGTCTTCCACCGATAAATTTGCTCCTAAATTTGATGGATTGAGATTTATTGAAACTCTTGTAACGGCTCATAGATGAACTGCGCCGGCGACGGCGACGTTCGTGGTTGCATTTGCGGAGAAGGGACCCACCGTGGCCGCAACTTTGTATGTTGCCTACCTTTATTGTTAATTCTTCTTCTTCTTCTTCTTCTTCTTTTTTAATTTATGTTGTCAAAAGAAATGATAGATGCTAGGAAATATTGTTGGAAGTCTCTTATTTTGGACATTAAAGAATAATAATTTTTAGTTTATATTTTTCATTATTTTAATGAAAAATTAGCAAAAGATGG

Coding sequence (CDS)

ATGAAGAAATCGGGTTTCATCGCCGCCTCCGTTGCCGCCGCATCCGCCTCCGCCGCCGTCGCCTCCCCTTCTTCCTCTACCCTTGTTTGCAACTCAAAAGTTCAATTCCCTCGCCAGGAGGGAAAGGAAGGAGAGAACTCTTCTTCATCGTCTTCCACCGATAAATTTGCTCCTAAATTTGATGGATTGAGATTTATTGAAACTCTTGTAACGGCTCATAGATGA

Protein sequence

MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQEGKEGENSSSSSSTDKFAPKFDGLRFIETLVTAHR*

Homology

[Close]

BLAST of MELO3C013618 vs. TrEMBL
Match: E0CTD2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03790 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.6e-18
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQE---GKEGENSSS--SSSTDK 60
          MKKSGF AASVAAASA+A +++PSSS  +CNSK+Q  R E   GK+ ENS S  SSS D+
Sbjct: 1  MKKSGFFAASVAAASATA-ISAPSSSGFLCNSKIQLSRDEAVAGKDIENSESQRSSSADR 60

Query: 61 FAPKFDGLRFIETLVTAHR 75
          FAP+FDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of MELO3C013618 vs. TrEMBL
Match: A0A061EAV9_THECC (Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative OS=Theobroma cacao GN=TCM_008102 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-15
Identity = 50/78 (64.10%), Postives = 58/78 (74.36%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASA--AVASPSSSTLVCNSKVQFPRQEGKEGENSS--SSSSTDKF 60
          MKKSG  AASVAAASA+A  A +SPSS    CNS  QF  ++ KE E+S+   S S DKF
Sbjct: 1  MKKSGLFAASVAAASATAISASSSPSSPNFACNSNFQFSSEDKKEHESSAIKKSPSKDKF 60

Query: 61 APKFDGLRFIETLVTAHR 75
          AP+FDGLRFIETL+TAHR
Sbjct: 61 APRFDGLRFIETLITAHR 78

[Close]

BLAST of MELO3C013618 vs. TrEMBL
Match: A0A059DGL2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01816 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.6e-15
Identity = 47/78 (60.26%), Postives = 55/78 (70.51%), Query Frame = 1


Query: 1   MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQEG----KEGENSSSSSSTDKF 60
           MKKSG  A S AAASA+A  +S SS    C SK+QFP QE     ++  +S +S S DKF
Sbjct: 51  MKKSGLFAVSAAAASATAIASSSSSLNFSCTSKLQFPNQEHVSSTEQAASSQNSGSADKF 110

Query: 61  APKFDGLRFIETLVTAHR 75
           AP+FDGLRFIETLVTAHR
Sbjct: 111 APRFDGLRFIETLVTAHR 128

[Close]

BLAST of MELO3C013618 vs. TrEMBL
Match: A0A067JMU1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25790 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.8e-14
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASP--SSSTLVCNSKVQFPRQEGKEGENSSSSSSTDKFAP 60
          MKKSG  AASVAAASA+A  AS   S+S+   +SK+Q   +E +  ++   SSST+KFAP
Sbjct: 1  MKKSGIFAASVAAASATAVSASSPSSNSSFSFSSKMQLSHEEARSSKDQERSSSTEKFAP 60

Query: 61 KFDGLRFIETLVTAHR 75
          +FDGL+FIETLVTAHR
Sbjct: 61 RFDGLKFIETLVTAHR 76

[Close]

BLAST of MELO3C013618 vs. TrEMBL
Match: A0A022QMU9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016811mg PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-13
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 1


Query: 1   MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQEG---KEGENSSSSS-STDKF 60
           MKK+G +AASVAAASASA  +S        +SK+QFPRQ+    K  ENS+S   S+DKF
Sbjct: 37  MKKTGLVAASVAAASASAISSS--------SSKIQFPRQDDCSRKTNENSASQGLSSDKF 96

Query: 61  APKFDGLRFIETLVTAHR 75
           AP+FDGLRFIETLVTAHR
Sbjct: 97  APRFDGLRFIETLVTAHR 106

[Close]

BLAST of MELO3C013618 vs. TAIR10
Match: AT4G28290.1 (AT4G28290.1 unknown protein)

HSP 1 Score: 73.6 bits (179), Expect = 6.0e-14
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQ--FPRQEGKEGENSSSSSSTD---- 60
          MKK+G IAAS++ A+++ A+++ S++T V  S  +    RQE KE +     SS D    
Sbjct: 1  MKKTGIIAASISVAASATAISAGSTNTSVSFSSPESNLSRQEAKEKQRKKKGSSEDGGDE 60

Query: 61 KFAPKFDGLRFIETLVTAHR 75
          KFAP+FDGLRFIETLVTAHR
Sbjct: 61 KFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of MELO3C013618 vs. TAIR10
Match: AT5G42110.1 (AT5G42110.1 unknown protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-06
Identity = 34/74 (45.95%), Postives = 41/74 (55.41%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQEGKEGENSSSSSSTDKFAPKF 60
          MK S  + ASV A S +A     SSS+++       P    K  E S  ++ +D F P+F
Sbjct: 1  MKVSSGVVASVIAVSTAAL----SSSSIL-------PPVSPKVWE-SRKTNGSDNFEPRF 60

Query: 61 DGLRFIETLVTAHR 75
          DGLRFIETLVTAHR
Sbjct: 61 DGLRFIETLVTAHR 62

[Close]

BLAST of MELO3C013618 vs. NCBI nr
Match: gi|659095137|ref|XP_008448419.1| (PREDICTED: uncharacterized protein LOC103490624 [Cucumis melo])

HSP 1 Score: 143.3 bits (360), Expect = 1.7e-31
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQEGKEGENSSSSSSTDKFAPKF 60
          MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQEGKEGENSSSSSSTDKFAPKF
Sbjct: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQEGKEGENSSSSSSTDKFAPKF 60

Query: 61 DGLRFIETLVTAHR 75
          DGLRFIETLVTAHR
Sbjct: 61 DGLRFIETLVTAHR 74

[Close]

BLAST of MELO3C013618 vs. NCBI nr
Match: gi|778712862|ref|XP_004139940.2| (PREDICTED: cell wall integrity and stress response component 1 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.0e-27
Identity = 72/86 (83.72%), Postives = 72/86 (83.72%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQEGKEGEN------------SS 60
          MKKSGFIAASVAAASASAAVASPSSSTLVCN KV FPRQEGKEGEN            SS
Sbjct: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNPKVLFPRQEGKEGENSSSSSSSSSSSSSS 60

Query: 61 SSSSTDKFAPKFDGLRFIETLVTAHR 75
          SSSSTDKFAPKFDGLRFIETLVTAHR
Sbjct: 61 SSSSTDKFAPKFDGLRFIETLVTAHR 86

[Close]

BLAST of MELO3C013618 vs. NCBI nr
Match: gi|225446347|ref|XP_002272559.1| (PREDICTED: uncharacterized protein LOC100262522 [Vitis vinifera])

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-17
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQE---GKEGENSSS--SSSTDK 60
          MKKSGF AASVAAASA+A +++PSSS  +CNSK+Q  R E   GK+ ENS S  SSS D+
Sbjct: 1  MKKSGFFAASVAAASATA-ISAPSSSGFLCNSKIQLSRDEAVAGKDIENSESQRSSSADR 60

Query: 61 FAPKFDGLRFIETLVTAHR 75
          FAP+FDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of MELO3C013618 vs. NCBI nr
Match: gi|694428850|ref|XP_009341971.1| (PREDICTED: uncharacterized protein LOC103933998 [Pyrus x bretschneideri])

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-15
Identity = 49/75 (65.33%), Postives = 59/75 (78.67%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQE-GKEGENSSSSSSTDKFAPK 60
          MKK GF+AASVAAASA+A  A+ SSS+ V +S ++F  QE G +     SS+ST+KFAPK
Sbjct: 1  MKKPGFLAASVAAASATALSATSSSSSFVSDSTMRFSHQEAGVKRNQEKSSASTEKFAPK 60

Query: 61 FDGLRFIETLVTAHR 75
          FDGLRFIETLVTAHR
Sbjct: 61 FDGLRFIETLVTAHR 75

[Close]

BLAST of MELO3C013618 vs. NCBI nr
Match: gi|590690744|ref|XP_007043592.1| (Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao])

HSP 1 Score: 89.7 bits (221), Expect = 2.3e-15
Identity = 50/78 (64.10%), Postives = 58/78 (74.36%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASA--AVASPSSSTLVCNSKVQFPRQEGKEGENSS--SSSSTDKF 60
          MKKSG  AASVAAASA+A  A +SPSS    CNS  QF  ++ KE E+S+   S S DKF
Sbjct: 1  MKKSGLFAASVAAASATAISASSSPSSPNFACNSNFQFSSEDKKEHESSAIKKSPSKDKF 60

Query: 61 APKFDGLRFIETLVTAHR 75
          AP+FDGLRFIETL+TAHR
Sbjct: 61 APRFDGLRFIETLITAHR 78

The following BLAST results are available for this feature:

BLAST of MELO3C013618 vs. TrEMBL


Match Name	E-value	Identity	Description
E0CTD2_VITVI	7.6e-18	69.62	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03790 PE=4 SV=...	[more]
A0A061EAV9_THECC	1.6e-15	64.10	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative OS=Theobroma cacao G...	[more]
A0A059DGL2_EUCGR	3.6e-15	60.26	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01816 PE=4 SV=1	[more]
A0A067JMU1_JATCU	8.8e-14	59.21	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25790 PE=4 SV=1	[more]
A0A022QMU9_ERYGU	1.5e-13	62.82	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016811mg PE=4 SV=1	[more]

BLAST of MELO3C013618 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28290.1	6.0e-14	51.25	unknown protein	[more]
AT5G42110.1	1.2e-06	45.95	unknown protein	[more]

BLAST of MELO3C013618 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095137\|ref\|XP_008448419.1\|	1.7e-31	100.00	PREDICTED: uncharacterized protein LOC103490624 [Cucumis melo]	[more]
gi\|778712862\|ref\|XP_004139940.2\|	2.0e-27	83.72	PREDICTED: cell wall integrity and stress response component 1 [Cucumis sativus]	[more]
gi\|225446347\|ref\|XP_002272559.1\|	1.1e-17	69.62	PREDICTED: uncharacterized protein LOC100262522 [Vitis vinifera]	[more]
gi\|694428850\|ref\|XP_009341971.1\|	1.8e-15	65.33	PREDICTED: uncharacterized protein LOC103933998 [Pyrus x bretschneideri]	[more]
gi\|590690744\|ref\|XP_007043592.1\|	2.3e-15	64.10	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU53245	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013618T1	MELO3C013618T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU53245	MU53245	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34683	FAMILY NOT NAMED	coord: 1..74 score: 1.9
None	No IPR available	PANTHER	PTHR34683:SF2	SUBFAMILY NOT NAMED	coord: 1..74 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C013618	Cla013563	Watermelon (97103) v1	mewmB109
MELO3C013618	ClCG02G017620	Watermelon (Charleston Gray)	mewcgB095
MELO3C013618	Cla97C02G043380	Watermelon (97103) v2	mewmbB097
MELO3C013618	CmaCh20G001970	Cucurbita maxima (Rimu)	cmameB496
MELO3C013618	CmaCh02G001010	Cucurbita maxima (Rimu)	cmameB555
MELO3C013618	CmoCh20G002170	Cucurbita moschata (Rifu)	cmomeB487
MELO3C013618	CmoCh02G001020	Cucurbita moschata (Rifu)	cmomeB543
MELO3C013618	Lsi10G008950	Bottle gourd (USVL1VR-Ls)	lsimeB048
MELO3C013618	Cp4.1LG16g07800	Cucurbita pepo (Zucchini)	cpemeB263
MELO3C013618	Carg13585	Silver-seed gourd	carmeB0027
MELO3C013618	Carg18452	Silver-seed gourd	carmeB0417
MELO3C013618	CsaV3_7G004410	Cucumber (Chinese Long) v3	cucmeB531

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013618	Wax gourd	mewgoB110
MELO3C013618	Wax gourd	mewgoB132
MELO3C013618	Melon (DHL92) v3.5.1	memeB043
MELO3C013618	Cucumber (Gy14) v1	cgymeB177
MELO3C013618	Cucumber (Gy14) v1	cgymeB247
MELO3C013618	Wild cucumber (PI 183967)	cpimeB438
MELO3C013618	Wild cucumber (PI 183967)	cpimeB519
MELO3C013618	Cucumber (Chinese Long) v2	cumeB446
MELO3C013618	Cucumber (Chinese Long) v2	cumeB514
MELO3C013618	Cucurbita pepo (Zucchini)	cpemeB661
MELO3C013618	Bottle gourd (USVL1VR-Ls)	lsimeB087
MELO3C013618	Cucumber (Gy14) v2	cgybmeB384
MELO3C013618	Silver-seed gourd	carmeB0714
MELO3C013618	Cucumber (Chinese Long) v3	cucmeB449