MELO3C013618T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013618T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_91
Location	chr11 : 18282439 .. 18283208 (-)
Sequence length	654

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTACAAAAATTCCACTCTCCACATATTAATATTAATATTCATATTCATATTATTTAGTTTATTAATACGCCGTCGCTGCTTGCCTCCTCAAACAAAATTGCCTTCTACTTTTCTCTTACGCTCTAATTTCTAATTTTCCCTCAAAACACTTTCTCTAATACATACTTTTTCAATATGAAGAAATCGGGTTTCATCGCCGCCTCCGTTGCCGCCGCATCCGCCTCCGCCGCCGTCGCCTCCCCTTCTTCCTCTACCCTTGTTTGCAACTCAAAAGTTCAATTCCCTCGCCAGGTTTACCATTTTCCCTCTTTAAAAAATCAATCCTCTAAGAATTTGAACCCTCGGTTTTTTTGTTTGATCCTGTAAATTTCTTGTCTTTTGAGATTTGGGATGTTTTAATTATGCAGGAGGGAAAGGAAGGAGAGAACTCTTCTTCATCGTCTTCCACCGATAAATTTGCTCCTAAATTTGATGGATTGAGATTTATTGAAACTCTTGTAACGGCTCATAGATGAACTGCGCCGGCGACGGCGACGTTCGTGGTTGCATTTGCGGAGAAGGGACCCACCGTGGCCGCAACTTTGTATGTTGCCTACCTTTATTGTTAATTCTTCTTCTTCTTCTTCTTCTTCTTTTTTAATTTATGTTGTCAAAAGAAATGATAGATGCTAGGAAATATTGTTGGAAGTCTCTTATTTTGGACATTAAAGAATAATAATTTTTAGTTTATATTTTTCATTATTTTAATGAAAAATTAGCAAAAGATGG

mRNA sequence

AATTACAAAAATTCCACTCTCCACATATTAATATTAATATTCATATTCATATTATTTAGTTTATTAATACGCCGTCGCTGCTTGCCTCCTCAAACAAAATTGCCTTCTACTTTTCTCTTACGCTCTAATTTCTAATTTTCCCTCAAAACACTTTCTCTAATACATACTTTTTCAATATGAAGAAATCGGGTTTCATCGCCGCCTCCGTTGCCGCCGCATCCGCCTCCGCCGCCGTCGCCTCCCCTTCTTCCTCTACCCTTGTTTGCAACTCAAAAGTTCAATTCCCTCGCCAGGAGGGAAAGGAAGGAGAGAACTCTTCTTCATCGTCTTCCACCGATAAATTTGCTCCTAAATTTGATGGATTGAGATTTATTGAAACTCTTGTAACGGCTCATAGATGAACTGCGCCGGCGACGGCGACGTTCGTGGTTGCATTTGCGGAGAAGGGACCCACCGTGGCCGCAACTTTGTATGTTGCCTACCTTTATTGTTAATTCTTCTTCTTCTTCTTCTTCTTCTTTTTTAATTTATGTTGTCAAAAGAAATGATAGATGCTAGGAAATATTGTTGGAAGTCTCTTATTTTGGACATTAAAGAATAATAATTTTTAGTTTATATTTTTCATTATTTTAATGAAAAATTAGCAAAAGATGG

Coding sequence (CDS)

ATGAAGAAATCGGGTTTCATCGCCGCCTCCGTTGCCGCCGCATCCGCCTCCGCCGCCGTCGCCTCCCCTTCTTCCTCTACCCTTGTTTGCAACTCAAAAGTTCAATTCCCTCGCCAGGAGGGAAAGGAAGGAGAGAACTCTTCTTCATCGTCTTCCACCGATAAATTTGCTCCTAAATTTGATGGATTGAGATTTATTGAAACTCTTGTAACGGCTCATAGATGA

Protein sequence

MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQEGKEGENSSSSSSTDKFAPKFDGLRFIETLVTAHR*

Homology

[Close]

BLAST of MELO3C013618T1 vs. TrEMBL
Match: E0CTD2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03790 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.6e-18
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQE---GKEGENSSS--SSSTDK 60
          MKKSGF AASVAAASA+A +++PSSS  +CNSK+Q  R E   GK+ ENS S  SSS D+
Sbjct: 1  MKKSGFFAASVAAASATA-ISAPSSSGFLCNSKIQLSRDEAVAGKDIENSESQRSSSADR 60

Query: 61 FAPKFDGLRFIETLVTAHR 75
          FAP+FDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of MELO3C013618T1 vs. TrEMBL
Match: A0A061EAV9_THECC (Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative OS=Theobroma cacao GN=TCM_008102 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-15
Identity = 50/78 (64.10%), Postives = 58/78 (74.36%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASA--AVASPSSSTLVCNSKVQFPRQEGKEGENSS--SSSSTDKF 60
          MKKSG  AASVAAASA+A  A +SPSS    CNS  QF  ++ KE E+S+   S S DKF
Sbjct: 1  MKKSGLFAASVAAASATAISASSSPSSPNFACNSNFQFSSEDKKEHESSAIKKSPSKDKF 60

Query: 61 APKFDGLRFIETLVTAHR 75
          AP+FDGLRFIETL+TAHR
Sbjct: 61 APRFDGLRFIETLITAHR 78

[Close]

BLAST of MELO3C013618T1 vs. TrEMBL
Match: A0A059DGL2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01816 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.6e-15
Identity = 47/78 (60.26%), Postives = 55/78 (70.51%), Query Frame = 1


Query: 1   MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQEG----KEGENSSSSSSTDKF 60
           MKKSG  A S AAASA+A  +S SS    C SK+QFP QE     ++  +S +S S DKF
Sbjct: 51  MKKSGLFAVSAAAASATAIASSSSSLNFSCTSKLQFPNQEHVSSTEQAASSQNSGSADKF 110

Query: 61  APKFDGLRFIETLVTAHR 75
           AP+FDGLRFIETLVTAHR
Sbjct: 111 APRFDGLRFIETLVTAHR 128

[Close]

BLAST of MELO3C013618T1 vs. TrEMBL
Match: A0A067JMU1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25790 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.8e-14
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASP--SSSTLVCNSKVQFPRQEGKEGENSSSSSSTDKFAP 60
          MKKSG  AASVAAASA+A  AS   S+S+   +SK+Q   +E +  ++   SSST+KFAP
Sbjct: 1  MKKSGIFAASVAAASATAVSASSPSSNSSFSFSSKMQLSHEEARSSKDQERSSSTEKFAP 60

Query: 61 KFDGLRFIETLVTAHR 75
          +FDGL+FIETLVTAHR
Sbjct: 61 RFDGLKFIETLVTAHR 76

[Close]

BLAST of MELO3C013618T1 vs. TrEMBL
Match: A0A022QMU9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016811mg PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-13
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 1


Query: 1   MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQEG---KEGENSSSSS-STDKF 60
           MKK+G +AASVAAASASA  +S        +SK+QFPRQ+    K  ENS+S   S+DKF
Sbjct: 37  MKKTGLVAASVAAASASAISSS--------SSKIQFPRQDDCSRKTNENSASQGLSSDKF 96

Query: 61  APKFDGLRFIETLVTAHR 75
           AP+FDGLRFIETLVTAHR
Sbjct: 97  APRFDGLRFIETLVTAHR 106

[Close]

BLAST of MELO3C013618T1 vs. TAIR10
Match: AT4G28290.1 (AT4G28290.1 unknown protein)

HSP 1 Score: 73.6 bits (179), Expect = 6.0e-14
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQ--FPRQEGKEGENSSSSSSTD---- 60
          MKK+G IAAS++ A+++ A+++ S++T V  S  +    RQE KE +     SS D    
Sbjct: 1  MKKTGIIAASISVAASATAISAGSTNTSVSFSSPESNLSRQEAKEKQRKKKGSSEDGGDE 60

Query: 61 KFAPKFDGLRFIETLVTAHR 75
          KFAP+FDGLRFIETLVTAHR
Sbjct: 61 KFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of MELO3C013618T1 vs. TAIR10
Match: AT5G42110.1 (AT5G42110.1 unknown protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-06
Identity = 34/74 (45.95%), Postives = 41/74 (55.41%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQEGKEGENSSSSSSTDKFAPKF 60
          MK S  + ASV A S +A     SSS+++       P    K  E S  ++ +D F P+F
Sbjct: 1  MKVSSGVVASVIAVSTAAL----SSSSIL-------PPVSPKVWE-SRKTNGSDNFEPRF 60

Query: 61 DGLRFIETLVTAHR 75
          DGLRFIETLVTAHR
Sbjct: 61 DGLRFIETLVTAHR 62

[Close]

BLAST of MELO3C013618T1 vs. NCBI nr
Match: gi|659095137|ref|XP_008448419.1| (PREDICTED: uncharacterized protein LOC103490624 [Cucumis melo])

HSP 1 Score: 143.3 bits (360), Expect = 1.7e-31
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQEGKEGENSSSSSSTDKFAPKF 60
          MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQEGKEGENSSSSSSTDKFAPKF
Sbjct: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQEGKEGENSSSSSSTDKFAPKF 60

Query: 61 DGLRFIETLVTAHR 75
          DGLRFIETLVTAHR
Sbjct: 61 DGLRFIETLVTAHR 74

[Close]

BLAST of MELO3C013618T1 vs. NCBI nr
Match: gi|778712862|ref|XP_004139940.2| (PREDICTED: cell wall integrity and stress response component 1 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.0e-27
Identity = 72/86 (83.72%), Postives = 72/86 (83.72%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQEGKEGEN------------SS 60
          MKKSGFIAASVAAASASAAVASPSSSTLVCN KV FPRQEGKEGEN            SS
Sbjct: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNPKVLFPRQEGKEGENSSSSSSSSSSSSSS 60

Query: 61 SSSSTDKFAPKFDGLRFIETLVTAHR 75
          SSSSTDKFAPKFDGLRFIETLVTAHR
Sbjct: 61 SSSSTDKFAPKFDGLRFIETLVTAHR 86

[Close]

BLAST of MELO3C013618T1 vs. NCBI nr
Match: gi|225446347|ref|XP_002272559.1| (PREDICTED: uncharacterized protein LOC100262522 [Vitis vinifera])

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-17
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQE---GKEGENSSS--SSSTDK 60
          MKKSGF AASVAAASA+A +++PSSS  +CNSK+Q  R E   GK+ ENS S  SSS D+
Sbjct: 1  MKKSGFFAASVAAASATA-ISAPSSSGFLCNSKIQLSRDEAVAGKDIENSESQRSSSADR 60

Query: 61 FAPKFDGLRFIETLVTAHR 75
          FAP+FDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of MELO3C013618T1 vs. NCBI nr
Match: gi|694428850|ref|XP_009341971.1| (PREDICTED: uncharacterized protein LOC103933998 [Pyrus x bretschneideri])

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-15
Identity = 49/75 (65.33%), Postives = 59/75 (78.67%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQE-GKEGENSSSSSSTDKFAPK 60
          MKK GF+AASVAAASA+A  A+ SSS+ V +S ++F  QE G +     SS+ST+KFAPK
Sbjct: 1  MKKPGFLAASVAAASATALSATSSSSSFVSDSTMRFSHQEAGVKRNQEKSSASTEKFAPK 60

Query: 61 FDGLRFIETLVTAHR 75
          FDGLRFIETLVTAHR
Sbjct: 61 FDGLRFIETLVTAHR 75

[Close]

BLAST of MELO3C013618T1 vs. NCBI nr
Match: gi|590690744|ref|XP_007043592.1| (Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao])

HSP 1 Score: 89.7 bits (221), Expect = 2.3e-15
Identity = 50/78 (64.10%), Postives = 58/78 (74.36%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASA--AVASPSSSTLVCNSKVQFPRQEGKEGENSS--SSSSTDKF 60
          MKKSG  AASVAAASA+A  A +SPSS    CNS  QF  ++ KE E+S+   S S DKF
Sbjct: 1  MKKSGLFAASVAAASATAISASSSPSSPNFACNSNFQFSSEDKKEHESSAIKKSPSKDKF 60

Query: 61 APKFDGLRFIETLVTAHR 75
          AP+FDGLRFIETL+TAHR
Sbjct: 61 APRFDGLRFIETLITAHR 78

The following BLAST results are available for this feature:

BLAST of MELO3C013618T1 vs. TrEMBL


Match Name	E-value	Identity	Description
E0CTD2_VITVI	7.6e-18	69.62	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03790 PE=4 SV=...	[more]
A0A061EAV9_THECC	1.6e-15	64.10	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative OS=Theobroma cacao G...	[more]
A0A059DGL2_EUCGR	3.6e-15	60.26	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01816 PE=4 SV=1	[more]
A0A067JMU1_JATCU	8.8e-14	59.21	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25790 PE=4 SV=1	[more]
A0A022QMU9_ERYGU	1.5e-13	62.82	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016811mg PE=4 SV=1	[more]

BLAST of MELO3C013618T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28290.1	6.0e-14	51.25	unknown protein	[more]
AT5G42110.1	1.2e-06	45.95	unknown protein	[more]

BLAST of MELO3C013618T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095137\|ref\|XP_008448419.1\|	1.7e-31	100.00	PREDICTED: uncharacterized protein LOC103490624 [Cucumis melo]	[more]
gi\|778712862\|ref\|XP_004139940.2\|	2.0e-27	83.72	PREDICTED: cell wall integrity and stress response component 1 [Cucumis sativus]	[more]
gi\|225446347\|ref\|XP_002272559.1\|	1.1e-17	69.62	PREDICTED: uncharacterized protein LOC100262522 [Vitis vinifera]	[more]
gi\|694428850\|ref\|XP_009341971.1\|	1.8e-15	65.33	PREDICTED: uncharacterized protein LOC103933998 [Pyrus x bretschneideri]	[more]
gi\|590690744\|ref\|XP_007043592.1\|	2.3e-15	64.10	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C013618	MELO3C013618	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C013618T1	MELO3C013618T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C013618T1.cds2	MELO3C013618T1.cds2	CDS
MELO3C013618T1.cds1	MELO3C013618T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34683	FAMILY NOT NAMED	coord: 1..74 score: 1.9
None	No IPR available	PANTHER	PTHR34683:SF2	SUBFAMILY NOT NAMED	coord: 1..74 score: 1.9