Carg18452 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18452
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative
Location	Cucurbita_argyrosperma_scaffold_161 : 320376 .. 321005 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAATCGGGTTTCATCGCCGCCTCCGTCGTCGCCGCCGCCGCCGCCGCCGCCGAGTCTGCCTCCCCCAGTTCCTCCACCATTTTCTGCAACCTAAAAGTTCAGCTCCCTCGGCAGGTAATTCATCGATTTCCCTCTTCCAAATATTCCCAAGTTTCAGTTTGTTCTTCGTAAATTTCTGGCCTTTCTTTTGCTGTTTTTGAGACGTGGGAAGTTTGAACATGCAGGAGGGTAAGGAAGGCGAGAATCCGTCGTCCTCGGCGGATAAATTTGCTCCCAAATTTGATGGATTGAAATTTATTAAGACTCTGGTTACGGCTCACAGATAAACTTGCCCCGGGGAAGGTGACGGCGATGGCGTCGGCGATGGCCAGACTGAACTTCGTATACTGCCTTATTTTGTTTGTTATTTTTGTCGTCGAAACTCTCACATTTTGCACATTCAAGATACCAAATTGAATAATAATTTTAGTTTAAAGTATTGATTTTTCTCGTCGAGAATCATTCACCGCTCCACACGTGGACTTGAAACGACAACTTTTCGAAGTTCAAAAGTAGTGGCTGTTCGAAAATTAAGTCATAAAAAAGATGGGGAAAAAAAAAAAAAAAGAGCTTTTCTTTTGAATG

mRNA sequence

ATGAAGAAATCGGGTTTCATCGCCGCCTCCGTCGTCGCCGCCGCCGCCGCCGCCGCCGAGTCTGCCTCCCCCAGTTCCTCCACCATTTTCTGCAACCTAAAAGTTCAGCTCCCTCGGCAGGAGGGTAAGGAAGGCGAGAATCCGTCGTCCTCGGCGGATAAATTTGCTCCCAAATTTGATGGATTGAAATTTATTAAGACTCTGGTTACGGCTCACAGATAAACTTGCCCCGGGGAAGGTGACGGCGATGGCGTCGGCGATGGCCAGACTGAACTTCGTATACTGCCTTATTTTGTTTGTTATTTTTGTCGTCGAAACTCTCACATTTTGCACATTCAAGATACCAAATTGAATAATAATTTTAGTTTAAAGTATTGATTTTTCTCGTCGAGAATCATTCACCGCTCCACACGTGGACTTGAAACGACAACTTTTCGAAGTTCAAAAGTAGTGGCTGTTCGAAAATTAAGTCATAAAAAAGATGGGGAAAAAAAAAAAAAAAGAGCTTTTCTTTTGAATG

Coding sequence (CDS)

ATGAAGAAATCGGGTTTCATCGCCGCCTCCGTCGTCGCCGCCGCCGCCGCCGCCGCCGAGTCTGCCTCCCCCAGTTCCTCCACCATTTTCTGCAACCTAAAAGTTCAGCTCCCTCGGCAGGAGGGTAAGGAAGGCGAGAATCCGTCGTCCTCGGCGGATAAATTTGCTCCCAAATTTGATGGATTGAAATTTATTAAGACTCTGGTTACGGCTCACAGATAA

Protein sequence

MKKSGFIAASVVAAAAAAAESASPSSSTIFCNLKVQLPRQEGKEGENPSSSADKFAPKFDGLKFIKTLVTAHR

Homology

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BLAST of Carg18452 vs. NCBI nr
Match: XP_022970726.1 (uncharacterized protein LOC111469626 [Cucurbita maxima])

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-12
Identity = 59/74 (79.73%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MKKSGFIAXXXXXXXXXXXXXXXXXXXXIFCNLKVQLPRQEGKE-GENPSSSADKFAPKF 60
          MKKSGFIA    XXXXXXXXXXXXXX  +FC+ K+QLPRQE KE GEN SSSADKFAPKF
Sbjct: 1  MKKSGFIA--ASXXXXXXXXXXXXXXSTLFCDPKIQLPRQEEKELGENSSSSADKFAPKF 60

Query: 61 DGLKFIKTLVTAHR 74
          DGL+FI+TLVTAHR
Sbjct: 61 DGLRFIETLVTAHR 72

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BLAST of Carg18452 vs. NCBI nr
Match: XP_022140652.1 (uncharacterized protein LOC111011258 [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 2.9e-11
Identity = 43/73 (58.90%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 1  MKKSGFIAXXXXXXXXXXXXXXXXXXXXIFCNLKVQLPRQEGKEGENPSSSADKFAPKFD 60
          MKKS FIA                      CN KVQ PRQEGK  EN SSSADKFAPKFD
Sbjct: 1  MKKSAFIA--ASVAGASAAVSASPSSSTFVCNPKVQFPRQEGKVEENSSSSADKFAPKFD 60

Query: 61 GLKFIKTLVTAHR 74
          GL+FI+TLVTAHR
Sbjct: 61 GLRFIETLVTAHR 71

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BLAST of Carg18452 vs. NCBI nr
Match: XP_023532108.1 (uncharacterized protein LOC111794370 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.6 bits (179), Expect = 3.2e-10
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1  MKKSGFIAXXXXXXXXXXXXXXXXXXXXIFCNLKVQLPRQEGKE-GENPSSSADKFAPKF 60
          MKKSG IA    XXXXXXXXXXXXXX  +FC+ K+QLP QE KE G+N SSSADKFAPKF
Sbjct: 1  MKKSGIIA--ASXXXXXXXXXXXXXXSTLFCDPKIQLPCQEEKELGQNSSSSADKFAPKF 60

Query: 61 DGLKFIKTLVTAHR 74
          DGL+FI+TLVTAHR
Sbjct: 61 DGLRFIETLVTAHR 72

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BLAST of Carg18452 vs. NCBI nr
Match: XP_002272559.1 (PREDICTED: uncharacterized protein LOC100262522 [Vitis vinifera] >CBI21847.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 62.0 bits (149), Expect = 9.7e-07
Identity = 39/80 (48.75%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 1  MKKSGFIAXXXXXXXXXXXXXXXXXXXXIFCNLKVQLPRQE---GKEGENP----SSSAD 60
          MKKSGF A                      CN K+QL R E   GK+ EN     SSSAD
Sbjct: 1  MKKSGFFA--ASVAAASATAISAPSSSGFLCNSKIQLSRDEAVAGKDIENSESQRSSSAD 60

Query: 61 KFAPKFDGLKFIKTLVTAHR 74
          +FAP+FDGL+FI+TLVTAHR
Sbjct: 61 RFAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of Carg18452 vs. NCBI nr
Match: XP_022847804.1 (uncharacterized protein LOC111370364 [Olea europaea var. sylvestris])

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 34 KVQLPRQEG----------KEGENPSSSADKFAPKFDGLKFIKTLVTAHR 74
          K+  P QE            +G +PSSS DKFAP+FDGL+FI+TLVTAHR
Sbjct: 25 KIHSPHQEAIVRRNCEISTSQGSSPSSSTDKFAPRFDGLRFIETLVTAHR 74

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BLAST of Carg18452 vs. TAIR10
Match: AT4G28290.1 (unknown protein)

HSP 1 Score: 42.0 bits (97), Expect = 1.9e-04
Identity = 17/21 (80.95%), Postives = 21/21 (100.00%), Query Frame = 0


Query: 53 DKFAPKFDGLKFIKTLVTAHR 74
          +KFAP+FDGL+FI+TLVTAHR
Sbjct: 60 EKFAPRFDGLRFIETLVTAHR 80

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BLAST of Carg18452 vs. TAIR10
Match: AT5G42110.1 (unknown protein)

HSP 1 Score: 40.8 bits (94), Expect = 4.2e-04
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 0


Query: 49 SSSADKFAPKFDGLKFIKTLVTAHR 74
          ++ +D F P+FDGL+FI+TLVTAHR
Sbjct: 38 TNGSDNFEPRFDGLRFIETLVTAHR 62

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BLAST of Carg18452 vs. TrEMBL
Match: tr|E0CTD2|E0CTD2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.4e-07
Identity = 39/80 (48.75%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 1  MKKSGFIAXXXXXXXXXXXXXXXXXXXXIFCNLKVQLPRQE---GKEGENP----SSSAD 60
          MKKSGF A                      CN K+QL R E   GK+ EN     SSSAD
Sbjct: 1  MKKSGFFA--ASVAAASATAISAPSSSGFLCNSKIQLSRDEAVAGKDIENSESQRSSSAD 60

Query: 61 KFAPKFDGLKFIKTLVTAHR 74
          +FAP+FDGL+FI+TLVTAHR
Sbjct: 61 RFAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of Carg18452 vs. TrEMBL
Match: tr|A0A2P4LYC9|A0A2P4LYC9_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_04660 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.9e-04
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 36 QLPRQEGKEGENPSSSADKFAPKFDGLKFIKTLVTAHR 74
          +L + +G      SSS DKFAP+FDGL+FI+TLVTAHR
Sbjct: 35 ELNKNQGNSSHQRSSSTDKFAPRFDGLRFIETLVTAHR 72

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BLAST of Carg18452 vs. TrEMBL
Match: tr|A0A2P5EQL6|A0A2P5EQL6_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_163540 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.1e-04
Identity = 29/51 (56.86%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 31 CNLKVQLPRQEG-----KEGENPSSS---ADKFAPKFDGLKFIKTLVTAHR 74
          CN  VQ  RQE      +E  N SSS   +DKF P+FDGL+FI+TLVTAHR
Sbjct: 28 CNSSVQFSRQEDIRKGEREYSNSSSSETTSDKFKPRFDGLRFIETLVTAHR 78

[Close]

BLAST of Carg18452 vs. TrEMBL
Match: tr|A0A022QMU9|A0A022QMU9_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a016811mg PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.6e-04
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 35  VQLPRQEG---KEGENPSS---SADKFAPKFDGLKFIKTLVTAHR 74
           +Q PRQ+    K  EN +S   S+DKFAP+FDGL+FI+TLVTAHR
Sbjct: 62  IQFPRQDDCSRKTNENSASQGLSSDKFAPRFDGLRFIETLVTAHR 106

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BLAST of Carg18452 vs. TrEMBL
Match: tr|A0A251PZU9|A0A251PZU9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G137400 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.6e-04
Identity = 22/28 (78.57%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 46 ENPSSSADKFAPKFDGLKFIKTLVTAHR 74
          ENPS S +KFAP+FDGL+FI+TLVTAHR
Sbjct: 54 ENPSPSTEKFAPRFDGLRFIETLVTAHR 81

The following BLAST results are available for this feature:

BLAST of Carg18452 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022970726.1	3.4e-12	79.73	uncharacterized protein LOC111469626 [Cucurbita maxima]	[more]
XP_022140652.1	2.9e-11	58.90	uncharacterized protein LOC111011258 [Momordica charantia]	[more]
XP_023532108.1	3.2e-10	75.68	uncharacterized protein LOC111794370 [Cucurbita pepo subsp. pepo]	[more]
XP_002272559.1	9.7e-07	48.75	PREDICTED: uncharacterized protein LOC100262522 [Vitis vinifera] >CBI21847.3 unn...	[more]
XP_022847804.1	1.2e-04	54.00	uncharacterized protein LOC111370364 [Olea europaea var. sylvestris]	[more]

BLAST of Carg18452 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28290.1	1.9e-04	80.95	unknown protein	[more]
AT5G42110.1	4.2e-04	64.00	unknown protein	[more]

BLAST of Carg18452 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18452 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E0CTD2\|E0CTD2_VITVI	6.4e-07	48.75	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=...	[more]
tr\|A0A2P4LYC9\|A0A2P4LYC9_QUESU	3.9e-04	60.53	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_04660 PE=4 SV=1	[more]
tr\|A0A2P5EQL6\|A0A2P5EQL6_9ROSA	5.1e-04	56.86	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_163540 PE=4 S...	[more]
tr\|A0A022QMU9\|A0A022QMU9_ERYGU	6.6e-04	60.00	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a016811mg PE...	[more]
tr\|A0A251PZU9\|A0A251PZU9_PRUPE	8.6e-04	78.57	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G137400 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18452-RA	Carg18452-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34683	FAMILY NOT NAMED	coord: 1..73

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18452	Cla013563	Watermelon (97103) v1	carwmB0412
Carg18452	MELO3C013618	Melon (DHL92) v3.5.1	carmeB0417
Carg18452	ClCG02G017620	Watermelon (Charleston Gray)	carwcgB0408
Carg18452	CmaCh20G001970	Cucurbita maxima (Rimu)	carcmaB0575
Carg18452	CmaCh02G001010	Cucurbita maxima (Rimu)	carcmaB0577
Carg18452	CmoCh02G001020	Cucurbita moschata (Rifu)	carcmoB0561
Carg18452	CmoCh20G002170	Cucurbita moschata (Rifu)	carcmoB0559
Carg18452	Lsi10G008950	Bottle gourd (USVL1VR-Ls)	carlsiB376
Carg18452	Cp4.1LG05g14950	Cucurbita pepo (Zucchini)	carcpeB0581
Carg18452	Cp4.1LG16g07800	Cucurbita pepo (Zucchini)	carcpeB0579
Carg18452	MELO3C013618.2	Melon (DHL92) v3.6.1	carmedB0421
Carg18452	Cla97C02G043380	Watermelon (97103) v2	carwmbB0438

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18452	Carg13585	Silver-seed gourd	carcarB032

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18452	Wax gourd	carwgoB0500
Carg18452	Cucumber (Gy14) v2	carcgybB0423
Carg18452	Cucumber (Gy14) v1	carcgyB0479
Carg18452	Cucurbita maxima (Rimu)	carcmaB0574
Carg18452	Cucurbita moschata (Rifu)	carcmoB0558
Carg18452	Cucurbita pepo (Zucchini)	carcpeB0578
Carg18452	Wild cucumber (PI 183967)	carcpiB0452
Carg18452	Cucumber (Chinese Long) v2	carcuB0447
Carg18452	Cucumber (Chinese Long) v3	carcucB0448
Carg18452	Melon (DHL92) v3.5.1	carmeB0420
Carg18452	Melon (DHL92) v3.6.1	carmedB0424