MELO3C012697 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012697
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Polyribonucleotide nucleotidyltransferase
Location	chr1 : 21707453 .. 21707971 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATATACGACGAGGCAACTCCATTGCACAATACTTTCACTCCCAGAAAAAGATTTGGCAAGACCTTGATCTCTTTGATATATTTGAGTGCAAGTCTACAAAAGACCAAAAGCACTATAGGAAAACTCTAGAAGATGGTCGTATTTACAAATTCCTTGCCGACCTCATTGTTAAGTTTGATCAGGTGAGAGGTAGGATACTTGGGAAAACTACTCTTCGATCAATTAATGATGTTTTTTCTGAAGCTCGCAGAGAAGAAAGTCATCGAAATATTATGATTGGCAAAAGACCTGTTGATTCAGTTGAGAGTTCTATGGCAAAAGACCTGTTGATTCAGTTGAGAGTTCTATATCAGACTGAAAATACTGCTTTGAAGACGTCTTTGACCAATTCAACACAACACATGAAAAATCTCGTGTCTGGTGCGATTATTGCAATAAACCTCGACACACGCATGAAACTTTTTGGAAAATACGCAAATTGGAAAAGCTCCAAGCAAGAGGAGAAGAATTAA

mRNA sequence

ATGGATGATATACGACGAGGCAACTCCATTGCACAATACTTTCACTCCCAGAAAAAGATTTGGCAAGACCTTGATCTCTTTGATATATTTGAGTGCAAGTCTACAAAAGACCAAAAGCACTATAGGAAAACTCTAGAAGATGGTCGTATTTACAAATTCCTTGCCGACCTCATTGTTAAGTTTGATCAGGTGAGAGGTAGGATACTTGGGAAAACTACTCTTCGATCAATTAATGATGTTTTTTCTGAAGCTCGCAGAGAAGAAAGTCATCGAAATATTATGATTGGCAAAAGACCTGTTGATTCAGTTGAGAGTTCTATGGCAAAAGACCTGTTGATTCAGTTGAGAGTTCTATATCAGACTGAAAATACTGCTTTGAAGACGTCTTTGACCAATTCAACACAACACATGAAAAATCTCGTGTCTGGTGCGATTATTGCAATAAACCTCGACACACGCATGAAACTTTTTGGAAAATACGCAAATTGGAAAAGCTCCAAGCAAGAGGAGAAGAATTAA

Coding sequence (CDS)

ATGGATGATATACGACGAGGCAACTCCATTGCACAATACTTTCACTCCCAGAAAAAGATTTGGCAAGACCTTGATCTCTTTGATATATTTGAGTGCAAGTCTACAAAAGACCAAAAGCACTATAGGAAAACTCTAGAAGATGGTCGTATTTACAAATTCCTTGCCGACCTCATTGTTAAGTTTGATCAGGTGAGAGGTAGGATACTTGGGAAAACTACTCTTCGATCAATTAATGATGTTTTTTCTGAAGCTCGCAGAGAAGAAAGTCATCGAAATATTATGATTGGCAAAAGACCTGTTGATTCAGTTGAGAGTTCTATGGCAAAAGACCTGTTGATTCAGTTGAGAGTTCTATATCAGACTGAAAATACTGCTTTGAAGACGTCTTTGACCAATTCAACACAACACATGAAAAATCTCGTGTCTGGTGCGATTATTGCAATAAACCTCGACACACGCATGAAACTTTTTGGAAAATACGCAAATTGGAAAAGCTCCAAGCAAGAGGAGAAGAATTAA

Protein sequence

MDDIRRGNSIAQYFHSQKKIWQDLDLFDIFECKSTKDQKHYRKTLEDGRIYKFLADLIVKFDQVRGRILGKTTLRSINDVFSEARREESHRNIMIGKRPVDSVESSMAKDLLIQLRVLYQTENTALKTSLTNSTQHMKNLVSGAIIAINLDTRMKLFGKYANWKSSKQEEKN*

Homology

[Close]

BLAST of MELO3C012697 vs. Swiss-Prot
Match: LRP6B_ARATH (La-related protein 6B OS=Arabidopsis thaliana GN=LARP6B PE=1 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 5.3e-22
Identity = 60/105 (57.14%), Postives = 65/105 (61.90%), Query Frame = 1


Query: 3   EEHGNEKDGGGQRRVRNRVRGKGRGRSQYH--------HNHNNIHNH---GNH------- 62
           E+ GNEK   GQR+ RNR RGKGRGR Q H        H+HN  HNH   GNH       
Sbjct: 439 EDQGNEK-AAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQNHNHNGRGNHHHHHHHQ 498

Query: 63  VGTPPPSSS-TTIEQAGTMKQQPPGPRMPDGTRGFAMGRGKPVTV 89
           VGT P ++    +EQ G  KQQPPGPRMPDGTRGF+MGRGKPV V
Sbjct: 499 VGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTRGFSMGRGKPVMV 542

[Close]

BLAST of MELO3C012697 vs. Swiss-Prot
Match: LRP6A_ARATH (La-related protein 6A OS=Arabidopsis thaliana GN=LARP6A PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.1e-09
Identity = 33/81 (40.74%), Postives = 44/81 (54.32%), Query Frame = 1


Query: 8   EKDGGGQRRVRNRVRGK--GRGRSQYHHNHNNIHNHGNHVGTPPPSSSTTIEQAGTMKQQ 67
           + DGG  ++ +N  +G+  G+GR Q H   N I  HG    +  P+          + ++
Sbjct: 336 DDDGGNHQKDKNGNKGRVVGQGRRQNHQGGNGI-GHGTASSSSHPNYHPV-----EVSKR 395

Query: 68  PPGPRMPDGTRGFAMGRGKPV 87
           PPGPRMPDGTRGF MGRGK +
Sbjct: 396 PPGPRMPDGTRGFTMGRGKAI 410

[Close]

BLAST of MELO3C012697 vs. Swiss-Prot
Match: LRP6C_ARATH (La-related protein 6C OS=Arabidopsis thaliana GN=LARP6C PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.3e-06
Identity = 32/84 (38.10%), Postives = 42/84 (50.00%), Query Frame = 1


Query: 3   EEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHN-HNNIHNHGNHVGTPPPSSSTTIEQAGT 62
           +  G++ + GG   +  + RGKGRGRS   +       + G  +G      S    ++ +
Sbjct: 366 DNDGDDNNVGG---LWGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLGSHESSS 425

Query: 63  MKQQPPGPRMPDGTRGFAMGRGKP 86
            K    GPRMPDGTRGF MGRGKP
Sbjct: 426 PKTATKGPRMPDGTRGFTMGRGKP 446

[Close]

BLAST of MELO3C012697 vs. TrEMBL
Match: A0A0A0K3E0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G224380 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 6.2e-46
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 1


Query: 2   REEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNIHNHGNHVGTPPPSSSTTIEQAGT 61
           REEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNN H+HGNH+GTPPPSSSTTIEQAGT
Sbjct: 33  REEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGT 92

Query: 62  MKQQPPGPRMPDGTRGFAMGRGKPVTVNMT 92
           MKQQPPGPRMPDGTRGF+MGRGKPVTVNMT
Sbjct: 93  MKQQPPGPRMPDGTRGFSMGRGKPVTVNMT 122

[Close]

BLAST of MELO3C012697 vs. TrEMBL
Match: A0A0B0MTE7_GOSAR (La-related 7 OS=Gossypium arboreum GN=F383_25980 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.2e-26
Identity = 60/88 (68.18%), Postives = 72/88 (81.82%), Query Frame = 1


Query: 3   EEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNIHNHGNHVGTPPPSSSTTIE-QAGT 62
           EEH NEK+GG Q++ RNR RGKGRGR+QYH+NH++  +HGNHVGTPP +SS  +  +  T
Sbjct: 336 EEHSNEKEGG-QKKGRNRGRGKGRGRTQYHNNHHS--SHGNHVGTPPSASSNWVSNEQAT 395

Query: 63  MKQQPPGPRMPDGTRGFAMGRGKPVTVN 90
             +QPPGPRMPDGTRGFAMGRGKPV VN
Sbjct: 396 GAKQPPGPRMPDGTRGFAMGRGKPVAVN 420

[Close]

BLAST of MELO3C012697 vs. TrEMBL
Match: A0A0D2NTE8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G268200 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.9e-25
Identity = 59/88 (67.05%), Postives = 71/88 (80.68%), Query Frame = 1


Query: 3   EEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNIHNHGNHVGTPPPSSSTTIE-QAGT 62
           EEH NEK+ G Q++ RNR RGKGRGR+QYH+NH++  +HGNHVGTPP +SS  +  +  T
Sbjct: 412 EEHSNEKECG-QKKGRNRGRGKGRGRTQYHNNHHS--SHGNHVGTPPSASSNWVSNEQAT 471

Query: 63  MKQQPPGPRMPDGTRGFAMGRGKPVTVN 90
             +QPPGPRMPDGTRGFAMGRGKPV VN
Sbjct: 472 GAKQPPGPRMPDGTRGFAMGRGKPVAVN 496

[Close]

BLAST of MELO3C012697 vs. TrEMBL
Match: A0A0D2QCN7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G268200 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.9e-25
Identity = 59/88 (67.05%), Postives = 71/88 (80.68%), Query Frame = 1


Query: 3   EEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNIHNHGNHVGTPPPSSSTTIE-QAGT 62
           EEH NEK+ G Q++ RNR RGKGRGR+QYH+NH++  +HGNHVGTPP +SS  +  +  T
Sbjct: 388 EEHSNEKECG-QKKGRNRGRGKGRGRTQYHNNHHS--SHGNHVGTPPSASSNWVSNEQAT 447

Query: 63  MKQQPPGPRMPDGTRGFAMGRGKPVTVN 90
             +QPPGPRMPDGTRGFAMGRGKPV VN
Sbjct: 448 GAKQPPGPRMPDGTRGFAMGRGKPVAVN 472

[Close]

BLAST of MELO3C012697 vs. TrEMBL
Match: A0A061EXJ3_THECC (RNA-binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_021541 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.9e-25
Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = 1


Query: 3   EEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNIHNHGNHVGTPPPSSSTTIE-QAGT 62
           EEH NEK+GG Q++ RNR RGKGRGR+QYH+N +N  + GNHVGTPP ++S  +  +  T
Sbjct: 414 EEHSNEKEGG-QKKGRNRGRGKGRGRAQYHNNQHN--SRGNHVGTPPSATSNLVSNEQAT 473

Query: 63  MKQQPPGPRMPDGTRGFAMGRGKPVTVN 90
           + +QPPGPRMPDGTRGFAMGRGKPV VN
Sbjct: 474 VAKQPPGPRMPDGTRGFAMGRGKPVAVN 498

[Close]

BLAST of MELO3C012697 vs. TAIR10
Match: AT2G43970.1 (AT2G43970.1 RNA-binding protein)

HSP 1 Score: 104.8 bits (260), Expect = 3.0e-23
Identity = 60/105 (57.14%), Postives = 65/105 (61.90%), Query Frame = 1


Query: 3   EEHGNEKDGGGQRRVRNRVRGKGRGRSQYH--------HNHNNIHNH---GNH------- 62
           E+ GNEK   GQR+ RNR RGKGRGR Q H        H+HN  HNH   GNH       
Sbjct: 439 EDQGNEK-AAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQNHNHNGRGNHHHHHHHQ 498

Query: 63  VGTPPPSSS-TTIEQAGTMKQQPPGPRMPDGTRGFAMGRGKPVTV 89
           VGT P ++    +EQ G  KQQPPGPRMPDGTRGF+MGRGKPV V
Sbjct: 499 VGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTRGFSMGRGKPVMV 542

[Close]

BLAST of MELO3C012697 vs. TAIR10
Match: AT5G46250.1 (AT5G46250.1 RNA-binding protein)

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-10
Identity = 33/81 (40.74%), Postives = 44/81 (54.32%), Query Frame = 1


Query: 8   EKDGGGQRRVRNRVRGK--GRGRSQYHHNHNNIHNHGNHVGTPPPSSSTTIEQAGTMKQQ 67
           + DGG  ++ +N  +G+  G+GR Q H   N I  HG    +  P+          + ++
Sbjct: 336 DDDGGNHQKDKNGNKGRVVGQGRRQNHQGGNGI-GHGTASSSSHPNYHPV-----EVSKR 395

Query: 68  PPGPRMPDGTRGFAMGRGKPV 87
           PPGPRMPDGTRGF MGRGK +
Sbjct: 396 PPGPRMPDGTRGFTMGRGKAI 410

[Close]

BLAST of MELO3C012697 vs. TAIR10
Match: AT3G19090.1 (AT3G19090.1 RNA-binding protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.0e-07
Identity = 32/84 (38.10%), Postives = 42/84 (50.00%), Query Frame = 1


Query: 3   EEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHN-HNNIHNHGNHVGTPPPSSSTTIEQAGT 62
           +  G++ + GG   +  + RGKGRGRS   +       + G  +G      S    ++ +
Sbjct: 366 DNDGDDNNVGG---LWGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLGSHESSS 425

Query: 63  MKQQPPGPRMPDGTRGFAMGRGKP 86
            K    GPRMPDGTRGF MGRGKP
Sbjct: 426 PKTATKGPRMPDGTRGFTMGRGKP 446

[Close]

BLAST of MELO3C012697 vs. NCBI nr
Match: gi|659092715|ref|XP_008447184.1| (PREDICTED: la-related protein 6B isoform X1 [Cucumis melo])

HSP 1 Score: 198.0 bits (502), Expect = 7.3e-48
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 2   REEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNIHNHGNHVGTPPPSSSTTIEQAGT 61
           REEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNIHNHGNHVGTPPPSSSTTIEQAGT
Sbjct: 403 REEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNIHNHGNHVGTPPPSSSTTIEQAGT 462

Query: 62  MKQQPPGPRMPDGTRGFAMGRGKPVTVNMT 92
           MKQQPPGPRMPDGTRGFAMGRGKPVTVNMT
Sbjct: 463 MKQQPPGPRMPDGTRGFAMGRGKPVTVNMT 492

[Close]

BLAST of MELO3C012697 vs. NCBI nr
Match: gi|659092724|ref|XP_008447188.1| (PREDICTED: la-related protein 6B isoform X5 [Cucumis melo])

HSP 1 Score: 198.0 bits (502), Expect = 7.3e-48
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 2   REEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNIHNHGNHVGTPPPSSSTTIEQAGT 61
           REEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNIHNHGNHVGTPPPSSSTTIEQAGT
Sbjct: 217 REEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNIHNHGNHVGTPPPSSSTTIEQAGT 276

Query: 62  MKQQPPGPRMPDGTRGFAMGRGKPVTVNMT 92
           MKQQPPGPRMPDGTRGFAMGRGKPVTVNMT
Sbjct: 277 MKQQPPGPRMPDGTRGFAMGRGKPVTVNMT 306

[Close]

BLAST of MELO3C012697 vs. NCBI nr
Match: gi|449444086|ref|XP_004139806.1| (PREDICTED: la-related protein 6B isoform X1 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 8.9e-46
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 1


Query: 2   REEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNIHNHGNHVGTPPPSSSTTIEQAGT 61
           REEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNN H+HGNH+GTPPPSSSTTIEQAGT
Sbjct: 403 REEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGT 462

Query: 62  MKQQPPGPRMPDGTRGFAMGRGKPVTVNMT 92
           MKQQPPGPRMPDGTRGF+MGRGKPVTVNMT
Sbjct: 463 MKQQPPGPRMPDGTRGFSMGRGKPVTVNMT 492

[Close]

BLAST of MELO3C012697 vs. NCBI nr
Match: gi|778725783|ref|XP_011659001.1| (PREDICTED: la-related protein 6B isoform X2 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 8.9e-46
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 1


Query: 2   REEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNIHNHGNHVGTPPPSSSTTIEQAGT 61
           REEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNN H+HGNH+GTPPPSSSTTIEQAGT
Sbjct: 217 REEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGT 276

Query: 62  MKQQPPGPRMPDGTRGFAMGRGKPVTVNMT 92
           MKQQPPGPRMPDGTRGF+MGRGKPVTVNMT
Sbjct: 277 MKQQPPGPRMPDGTRGFSMGRGKPVTVNMT 306

[Close]

BLAST of MELO3C012697 vs. NCBI nr
Match: gi|700188977|gb|KGN44210.1| (hypothetical protein Csa_7G224380 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 8.9e-46
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 1


Query: 2   REEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNIHNHGNHVGTPPPSSSTTIEQAGT 61
           REEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNN H+HGNH+GTPPPSSSTTIEQAGT
Sbjct: 33  REEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGT 92

Query: 62  MKQQPPGPRMPDGTRGFAMGRGKPVTVNMT 92
           MKQQPPGPRMPDGTRGF+MGRGKPVTVNMT
Sbjct: 93  MKQQPPGPRMPDGTRGFSMGRGKPVTVNMT 122

The following BLAST results are available for this feature:

BLAST of MELO3C012697 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LRP6B_ARATH	5.3e-22	57.14	La-related protein 6B OS=Arabidopsis thaliana GN=LARP6B PE=1 SV=2	[more]
LRP6A_ARATH	5.1e-09	40.74	La-related protein 6A OS=Arabidopsis thaliana GN=LARP6A PE=2 SV=1	[more]
LRP6C_ARATH	5.3e-06	38.10	La-related protein 6C OS=Arabidopsis thaliana GN=LARP6C PE=3 SV=1	[more]

BLAST of MELO3C012697 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3E0_CUCSA	6.2e-46	95.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G224380 PE=4 SV=1	[more]
A0A0B0MTE7_GOSAR	7.2e-26	68.18	La-related 7 OS=Gossypium arboreum GN=F383_25980 PE=4 SV=1	[more]
A0A0D2NTE8_GOSRA	7.9e-25	67.05	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G268200 PE=4 SV=1	[more]
A0A0D2QCN7_GOSRA	7.9e-25	67.05	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G268200 PE=4 SV=1	[more]
A0A061EXJ3_THECC	7.9e-25	65.91	RNA-binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_021541 PE=4 SV...	[more]

BLAST of MELO3C012697 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43970.1	3.0e-23	57.14	RNA-binding protein	[more]
AT5G46250.1	2.9e-10	40.74	RNA-binding protein	[more]
AT3G19090.1	3.0e-07	38.10	RNA-binding protein	[more]

BLAST of MELO3C012697 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092715\|ref\|XP_008447184.1\|	7.3e-48	100.00	PREDICTED: la-related protein 6B isoform X1 [Cucumis melo]	[more]
gi\|659092724\|ref\|XP_008447188.1\|	7.3e-48	100.00	PREDICTED: la-related protein 6B isoform X5 [Cucumis melo]	[more]
gi\|449444086\|ref\|XP_004139806.1\|	8.9e-46	95.56	PREDICTED: la-related protein 6B isoform X1 [Cucumis sativus]	[more]
gi\|778725783\|ref\|XP_011659001.1\|	8.9e-46	95.56	PREDICTED: la-related protein 6B isoform X2 [Cucumis sativus]	[more]
gi\|700188977\|gb\|KGN44210.1\|	8.9e-46	95.56	hypothetical protein Csa_7G224380 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0006396	RNA processing
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0043167	ion binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU46444	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012697T1	MELO3C012697T1	mRNA
MELO3C012697T2	MELO3C012697T2	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU46444	MU46444	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 1..108 score: 8.9
None	No IPR available	PANTHER	PTHR34222:SF2	SUBFAMILY NOT NAMED	coord: 1..108 score: 8.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012697	Wax gourd	mewgoB244
MELO3C012697	Cucumber (Gy14) v1	cgymeB254
MELO3C012697	Wild cucumber (PI 183967)	cpimeB541
MELO3C012697	Cucumber (Chinese Long) v2	cumeB533
MELO3C012697	Cucumber (Chinese Long) v2	cumeB538
MELO3C012697	Bottle gourd (USVL1VR-Ls)	lsimeB197
MELO3C012697	Cucumber (Gy14) v2	cgybmeB471
MELO3C012697	Cucumber (Chinese Long) v3	cucmeB551