MELO3C012697T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012697T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Polyribonucleotide nucleotidyltransferase
Location	chr1 : 21707453 .. 21707971 (-)
Sequence length	519

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATATACGACGAGGCAACTCCATTGCACAATACTTTCACTCCCAGAAAAAGATTTGGCAAGACCTTGATCTCTTTGATATATTTGAGTGCAAGTCTACAAAAGACCAAAAGCACTATAGGAAAACTCTAGAAGATGGTCGTATTTACAAATTCCTTGCCGACCTCATTGTTAAGTTTGATCAGGTGAGAGGTAGGATACTTGGGAAAACTACTCTTCGATCAATTAATGATGTTTTTTCTGAAGCTCGCAGAGAAGAAAGTCATCGAAATATTATGATTGGCAAAAGACCTGTTGATTCAGTTGAGAGTTCTATGGCAAAAGACCTGTTGATTCAGTTGAGAGTTCTATATCAGACTGAAAATACTGCTTTGAAGACGTCTTTGACCAATTCAACACAACACATGAAAAATCTCGTGTCTGGTGCGATTATTGCAATAAACCTCGACACACGCATGAAACTTTTTGGAAAATACGCAAATTGGAAAAGCTCCAAGCAAGAGGAGAAGAATTAA

mRNA sequence

ATGGATGATATACGACGAGGCAACTCCATTGCACAATACTTTCACTCCCAGAAAAAGATTTGGCAAGACCTTGATCTCTTTGATATATTTGAGTGCAAGTCTACAAAAGACCAAAAGCACTATAGGAAAACTCTAGAAGATGGTCGTATTTACAAATTCCTTGCCGACCTCATTGTTAAGTTTGATCAGGTGAGAGGTAGGATACTTGGGAAAACTACTCTTCGATCAATTAATGATGTTTTTTCTGAAGCTCGCAGAGAAGAAAGTCATCGAAATATTATGATTGGCAAAAGACCTGTTGATTCAGTTGAGAGTTCTATGGCAAAAGACCTGTTGATTCAGTTGAGAGTTCTATATCAGACTGAAAATACTGCTTTGAAGACGTCTTTGACCAATTCAACACAACACATGAAAAATCTCGTGTCTGGTGCGATTATTGCAATAAACCTCGACACACGCATGAAACTTTTTGGAAAATACGCAAATTGGAAAAGCTCCAAGCAAGAGGAGAAGAATTAA

Coding sequence (CDS)

ATGGATGATATACGACGAGGCAACTCCATTGCACAATACTTTCACTCCCAGAAAAAGATTTGGCAAGACCTTGATCTCTTTGATATATTTGAGTGCAAGTCTACAAAAGACCAAAAGCACTATAGGAAAACTCTAGAAGATGGTCGTATTTACAAATTCCTTGCCGACCTCATTGTTAAGTTTGATCAGGTGAGAGGTAGGATACTTGGGAAAACTACTCTTCGATCAATTAATGATGTTTTTTCTGAAGCTCGCAGAGAAGAAAGTCATCGAAATATTATGATTGGCAAAAGACCTGTTGATTCAGTTGAGAGTTCTATGGCAAAAGACCTGTTGATTCAGTTGAGAGTTCTATATCAGACTGAAAATACTGCTTTGAAGACGTCTTTGACCAATTCAACACAACACATGAAAAATCTCGTGTCTGGTGCGATTATTGCAATAAACCTCGACACACGCATGAAACTTTTTGGAAAATACGCAAATTGGAAAAGCTCCAAGCAAGAGGAGAAGAATTAA

Protein sequence

MDDIRRGNSIAQYFHSQKKIWQDLDLFDIFECKSTKDQKHYRKTLEDGRIYKFLADLIVKFDQVRGRILGKTTLRSINDVFSEARREESHRNIMIGKRPVDSVESSMAKDLLIQLRVLYQTENTALKTSLTNSTQHMKNLVSGAIIAINLDTRMKLFGKYANWKSSKQEEKN*

Homology

[Close]

BLAST of MELO3C012697T1 vs. TrEMBL
Match: A5B6K2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031315 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.9e-25
Identity = 60/108 (55.56%), Postives = 85/108 (78.70%), Query Frame = 1


Query: 1   MDDIRRG-NSIAQYFHSQKKIWQDLDLFDIFECKSTKDQKHYRKTLEDGRIYKFLADLIV 60
           + +IR+G +++ +YF+S K+IWQDLDLF+ +E KST+D  H++KT+ED RI+KFLA   V
Sbjct: 148 LGEIRQGEDNVTKYFNSLKRIWQDLDLFNTYEWKSTEDGLHHKKTMEDNRIFKFLAGFNV 207

Query: 61  KFDQVRGRILGKTTLRSINDVFSEARREESHRNIMIGKR-PVDSVESS 107
           KFD+VRGRI+G+  L  I +VFSE RREES RN+M+GK+ P  ++E S
Sbjct: 208 KFDEVRGRIIGRQPLPLIGEVFSEVRREESRRNVMLGKKGPGVAIEGS 255

[Close]

BLAST of MELO3C012697T1 vs. TrEMBL
Match: A5BR64_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035057 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-24
Identity = 57/99 (57.58%), Postives = 80/99 (80.81%), Query Frame = 1


Query: 1   MDDIRRG-NSIAQYFHSQKKIWQDLDLFDIFECKSTKDQKHYRKTLEDGRIYKFLADLIV 60
           + +IR+G +++ +YF+S K+IWQDLDLF  +E KST+D  H++KT+ED +I+KFLA L V
Sbjct: 99  LGEIRQGEDNVTKYFNSLKRIWQDLDLFKTYEWKSTEDGLHHKKTMEDNQIFKFLAGLNV 158

Query: 61  KFDQVRGRILGKTTLRSINDVFSEARREESHRNIMIGKR 99
            FD+VRGRI+G+  L SI +VFSE RREES RN+M+GK+
Sbjct: 159 DFDEVRGRIIGRQPLPSIGEVFSEVRREESRRNVMLGKK 197

[Close]

BLAST of MELO3C012697T1 vs. TrEMBL
Match: K7LIM4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-24
Identity = 52/99 (52.53%), Postives = 78/99 (78.79%), Query Frame = 1


Query: 3   DIRRGNSIAQYFHSQKKIWQDLDLFDIFECKSTKDQKHYRKTLEDGRIYKFLADLIVKFD 62
           +IRRGN++ +YFHS K++WQDLDLF+ +   S +D KHY++T+E+GR ++FLA L  + D
Sbjct: 87  EIRRGNNVTRYFHSLKRVWQDLDLFNNYNWMSAEDAKHYQQTVEEGRAFQFLAGLNEELD 146

Query: 63  QVRGRILGKTTLRSINDVFSEARREESHRNIMIGKRPVD 102
           +VRGRI+G  TL S+ ++F+E RREE+ R++M+GK  VD
Sbjct: 147 EVRGRIIGMATLPSLGEIFAEVRREETRRSVMMGKMKVD 185

[Close]

BLAST of MELO3C012697T1 vs. TrEMBL
Match: A0A0B2P397_GLYSO (Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_046282 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-24
Identity = 52/99 (52.53%), Postives = 78/99 (78.79%), Query Frame = 1


Query: 3   DIRRGNSIAQYFHSQKKIWQDLDLFDIFECKSTKDQKHYRKTLEDGRIYKFLADLIVKFD 62
           +IRRGN++ +YFHS K++WQDLDLF+ +   S +D KHY++T+E+GR ++FLA L  + D
Sbjct: 93  EIRRGNNVTRYFHSLKRVWQDLDLFNNYNWMSAEDAKHYQQTVEEGRAFQFLAGLNEELD 152

Query: 63  QVRGRILGKTTLRSINDVFSEARREESHRNIMIGKRPVD 102
           +VRGRI+G  TL S+ ++F+E RREE+ R++M+GK  VD
Sbjct: 153 EVRGRIIGMATLPSLGEIFAEVRREETRRSVMMGKMKVD 191

[Close]

BLAST of MELO3C012697T1 vs. TrEMBL
Match: A5C2K9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005624 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.3e-24
Identity = 62/136 (45.59%), Postives = 94/136 (69.12%), Query Frame = 1


Query: 1   MDDIRRG-NSIAQYFHSQKKIWQDLDLFDIFECKSTKDQKHYRKTLEDGRIYKFLADLIV 60
           + +IR+G +++ +YF S K+IWQDLDLF+ +E K  +D  H++KT+ED RI+KFLA L V
Sbjct: 62  LGEIRQGEDNVTKYFSSLKRIWQDLDLFNTYEWKFAEDGLHHKKTMEDNRIFKFLAGLNV 121

Query: 61  KFDQVRGRILGKTTLRSINDVFSEARREESHRNIMIGKR-PVDSVESSMAKDLLIQLRVL 120
           +FD+VRGRI+GK  L SI +VFS+ RREES RN+M+GK+ P  ++E +    L  + +  
Sbjct: 122 EFDKVRGRIIGKQPLPSIGEVFSKVRREESRRNVMLGKKGPRVAIEGNELYALSCRFKST 181

Query: 121 YQTENTALKTSLTNST 135
               ++     +TNS+
Sbjct: 182 PWIIDSGASNHMTNSS 197

[Close]

BLAST of MELO3C012697T1 vs. NCBI nr
Match: gi|568834654|ref|XP_006471430.1| (PREDICTED: uncharacterized protein LOC102629445 [Citrus sinensis])

HSP 1 Score: 131.3 bits (329), Expect = 1.6e-27
Identity = 77/181 (42.54%), Postives = 108/181 (59.67%), Query Frame = 1


Query: 1   MDDIRRGN-SIAQYFHSQKKIWQDLDLFDIFECKSTKDQKHYRKTLEDGRIYKFLADLIV 60
           + +IR+G+ S+ +YF+S K++WQDLDLF+ +E KS  D  H++KT+ED RIYKFLA L V
Sbjct: 138 LGEIRQGDDSVTKYFNSLKRLWQDLDLFNTYEWKSADDCNHHKKTVEDSRIYKFLAGLNV 197

Query: 61  KFDQVRGRILGKTTLRSINDVFSEARREESHRNIMIGKRPVDSVESSMAKDLLIQLRVLY 120
           +FD+VRGRI+G+  L  I +VF+E RREES R++M+ KR   S   S+    LI     Y
Sbjct: 198 EFDEVRGRIIGRPPLPPIGEVFAEVRREESRRSVMLRKR---SAGESIENSALITDAAAY 257

Query: 121 QTENTALKT--------SLTNSTQHMKNLVSGAIIAINLDTRMKLFGKYANWKSSKQEEK 173
           +T N   ++           +  +H +            +   KL GK  NWKSSKQ EK
Sbjct: 258 KTANYQRRSDDKSQAWCDHCHKPRHTR------------EKCWKLHGKPENWKSSKQGEK 303

[Close]

BLAST of MELO3C012697T1 vs. NCBI nr
Match: gi|147782131|emb|CAN72054.1| (hypothetical protein VITISV_031315 [Vitis vinifera])

HSP 1 Score: 122.9 bits (307), Expect = 5.6e-25
Identity = 60/108 (55.56%), Postives = 85/108 (78.70%), Query Frame = 1


Query: 1   MDDIRRG-NSIAQYFHSQKKIWQDLDLFDIFECKSTKDQKHYRKTLEDGRIYKFLADLIV 60
           + +IR+G +++ +YF+S K+IWQDLDLF+ +E KST+D  H++KT+ED RI+KFLA   V
Sbjct: 148 LGEIRQGEDNVTKYFNSLKRIWQDLDLFNTYEWKSTEDGLHHKKTMEDNRIFKFLAGFNV 207

Query: 61  KFDQVRGRILGKTTLRSINDVFSEARREESHRNIMIGKR-PVDSVESS 107
           KFD+VRGRI+G+  L  I +VFSE RREES RN+M+GK+ P  ++E S
Sbjct: 208 KFDEVRGRIIGRQPLPLIGEVFSEVRREESRRNVMLGKKGPGVAIEGS 255

[Close]

BLAST of MELO3C012697T1 vs. NCBI nr
Match: gi|985429346|ref|XP_015384177.1| (PREDICTED: uncharacterized protein LOC107176347 [Citrus sinensis])

HSP 1 Score: 122.1 bits (305), Expect = 9.6e-25
Identity = 60/108 (55.56%), Postives = 85/108 (78.70%), Query Frame = 1


Query: 1   MDDIRRG-NSIAQYFHSQKKIWQDLDLFDIFECKSTKD-QKHYRKTLEDGRIYKFLADLI 60
           + ++R+G +++ +YF+S K+IWQDLDLF+ +E KS +D Q+H++KT+EDGRI+KFLA L 
Sbjct: 85  LGEMRQGEHNVTKYFNSLKRIWQDLDLFNTYEWKSPEDAQQHHKKTVEDGRIFKFLAGLN 144

Query: 61  VKFDQVRGRILGKTTLRSINDVFSEARREESHRNIMIGKRPVDSVESS 107
           V+FD+VRGRI+G+  L SI DVFSE  REES RN+M+GK+     E S
Sbjct: 145 VEFDEVRGRIIGRQPLPSIGDVFSEVIREESRRNVMLGKKGTGVAEGS 192

[Close]

BLAST of MELO3C012697T1 vs. NCBI nr
Match: gi|147839951|emb|CAN70454.1| (hypothetical protein VITISV_035057 [Vitis vinifera])

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-24
Identity = 57/99 (57.58%), Postives = 80/99 (80.81%), Query Frame = 1


Query: 1   MDDIRRG-NSIAQYFHSQKKIWQDLDLFDIFECKSTKDQKHYRKTLEDGRIYKFLADLIV 60
           + +IR+G +++ +YF+S K+IWQDLDLF  +E KST+D  H++KT+ED +I+KFLA L V
Sbjct: 99  LGEIRQGEDNVTKYFNSLKRIWQDLDLFKTYEWKSTEDGLHHKKTMEDNQIFKFLAGLNV 158

Query: 61  KFDQVRGRILGKTTLRSINDVFSEARREESHRNIMIGKR 99
            FD+VRGRI+G+  L SI +VFSE RREES RN+M+GK+
Sbjct: 159 DFDEVRGRIIGRQPLPSIGEVFSEVRREESRRNVMLGKK 197

[Close]

BLAST of MELO3C012697T1 vs. NCBI nr
Match: gi|734315976|gb|KHN02049.1| (hypothetical protein glysoja_046282, partial [Glycine soja])

HSP 1 Score: 120.9 bits (302), Expect = 2.1e-24
Identity = 52/99 (52.53%), Postives = 78/99 (78.79%), Query Frame = 1


Query: 3   DIRRGNSIAQYFHSQKKIWQDLDLFDIFECKSTKDQKHYRKTLEDGRIYKFLADLIVKFD 62
           +IRRGN++ +YFHS K++WQDLDLF+ +   S +D KHY++T+E+GR ++FLA L  + D
Sbjct: 93  EIRRGNNVTRYFHSLKRVWQDLDLFNNYNWMSAEDAKHYQQTVEEGRAFQFLAGLNEELD 152

Query: 63  QVRGRILGKTTLRSINDVFSEARREESHRNIMIGKRPVD 102
           +VRGRI+G  TL S+ ++F+E RREE+ R++M+GK  VD
Sbjct: 153 EVRGRIIGMATLPSLGEIFAEVRREETRRSVMMGKMKVD 191

The following BLAST results are available for this feature:

BLAST of MELO3C012697T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A5B6K2_VITVI	3.9e-25	55.56	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031315 PE=4 SV=1	[more]
A5BR64_VITVI	1.1e-24	57.58	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035057 PE=4 SV=1	[more]
K7LIM4_SOYBN	1.5e-24	52.53	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2P397_GLYSO	1.5e-24	52.53	Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_046282 PE=4 SV=1	[more]
A5C2K9_VITVI	4.3e-24	45.59	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005624 PE=4 SV=1	[more]

BLAST of MELO3C012697T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|568834654\|ref\|XP_006471430.1\|	1.6e-27	42.54	PREDICTED: uncharacterized protein LOC102629445 [Citrus sinensis]	[more]
gi\|147782131\|emb\|CAN72054.1\|	5.6e-25	55.56	hypothetical protein VITISV_031315 [Vitis vinifera]	[more]
gi\|985429346\|ref\|XP_015384177.1\|	9.6e-25	55.56	PREDICTED: uncharacterized protein LOC107176347 [Citrus sinensis]	[more]
gi\|147839951\|emb\|CAN70454.1\|	1.6e-24	57.58	hypothetical protein VITISV_035057 [Vitis vinifera]	[more]
gi\|734315976\|gb\|KHN02049.1\|	2.1e-24	52.53	hypothetical protein glysoja_046282, partial [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0006396	RNA processing
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0043167	ion binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0003723	RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C012697	MELO3C012697	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C012697T1	MELO3C012697T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012697T1.cds1	MELO3C012697T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 1..108 score: 8.9
None	No IPR available	PANTHER	PTHR34222:SF2	SUBFAMILY NOT NAMED	coord: 1..108 score: 8.9