MELO3C012626.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012626.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr01 : 21652267 .. 21653080 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATATTCAAGAGGAATGTGAGCGGGAGAAGATATGGAACATCAGGAAGTAATACTTGGAATAACAAGCAATTAGCAGCAGTATCAATCAAAAACCCCATCATAGATGATCAAAAGAACATAAGGATGTGCAATAACAAGAATATTATTGATCAAATTATGGTGCCACCACCAGCTTCTGAAAAAGGTAACAGCAACAATAATAATAATGGTGAAATCAGTTACATCAACTTCAGCAGCTGTGAATCGTCCATGATTATCCAAACTGAGAAGAAGCCACTACTTCTTGATCCAAATAATTACCTCAACAACAACAATCATCATCATCAAGAATGGAATACCAATAATAATAGTTATGATCAATATAGCAGCTGCTCTTCAAGTGGTATTATTTCACCTTCAATTCCTTATCCAACAAATCAGCAGCTTGATATCAATGATTTCTTCACTAATAGCAATTGGGATGAGCTCAGATCAATGGTGGATATGTTGTAAGATTATTGCTCTTTTCTTCTTCATCATTATTGTTGATCTTTTTATCGTCCATTGTGTAAATATATACAACACACCTCATCTCTCTCAACACAAGGTACAGCCTTTATCAATATTGCTCGACATATCATTCATCTCACCAATTCAAATTAAAGGAAGGGCAATTGATCAGAAGAAGCAAAGGATTATTGGGTTTGGAATTTTCTTTTATCATCATTACATTCAATAATCCAACTACTATTTTAGGATTAATCATCATATACTTTAGATTTTATATATATAGCTGGGTTGATTCCTCCCTTGTGAATATATTATATATATAGT

mRNA sequence

GATATTCAAGAGGAATGTGAGCGGGAGAAGATATGGAACATCAGGAAGTAATACTTGGAATAACAAGCAATTAGCAGCAGTATCAATCAAAAACCCCATCATAGATGATCAAAAGAACATAAGGATGTGCAATAACAAGAATATTATTGATCAAATTATGGTGCCACCACCAGCTTCTGAAAAAGGTAACAGCAACAATAATAATAATGGTGAAATCAGTTACATCAACTTCAGCAGCTGTGAATCGTCCATGATTATCCAAACTGAGAAGAAGCCACTACTTCTTGATCCAAATAATTACCTCAACAACAACAATCATCATCATCAAGAATGGAATACCAATAATAATAGTTATGATCAATATAGCAGCTGCTCTTCAAGTGGTATTATTTCACCTTCAATTCCTTATCCAACAAATCAGCAGCTTGATATCAATGATTTCTTCACTAATAGCAATTGGGATGAGCTCAGATCAATGGTGGATATGTTGTAAGATTATTGCTCTTTTCTTCTTCATCATTATTGTTGATCTTTTTATCGTCCATTGTGTAAATATATACAACACACCTCATCTCTCTCAACACAAGGTACAGCCTTTATCAATATTGCTCGACATATCATTCATCTCACCAATTCAAATTAAAGGAAGGGCAATTGATCAGAAGAAGCAAAGGATTATTGGGTTTGGAATTTTCTTTTATCATCATTACATTCAATAATCCAACTACTATTTTAGGATTAATCATCATATACTTTAGATTTTATATATATAGCTGGGTTGATTCCTCCCTTGTGAATATATTATATATATAGT

Coding sequence (CDS)

ATATTCAAGAGGAATGTGAGCGGGAGAAGATATGGAACATCAGGAAGTAATACTTGGAATAACAAGCAATTAGCAGCAGTATCAATCAAAAACCCCATCATAGATGATCAAAAGAACATAAGGATGTGCAATAACAAGAATATTATTGATCAAATTATGGTGCCACCACCAGCTTCTGAAAAAGGTAACAGCAACAATAATAATAATGGTGAAATCAGTTACATCAACTTCAGCAGCTGTGAATCGTCCATGATTATCCAAACTGAGAAGAAGCCACTACTTCTTGATCCAAATAATTACCTCAACAACAACAATCATCATCATCAAGAATGGAATACCAATAATAATAGTTATGATCAATATAGCAGCTGCTCTTCAAGTGGTATTATTTCACCTTCAATTCCTTATCCAACAAATCAGCAGCTTGATATCAATGATTTCTTCACTAATAGCAATTGGGATGAGCTCAGATCAATGGTGGATATGTTGTAA

Protein sequence

IFKRNVSGRRYGTSGSNTWNNKQLAAVSIKNPIIDDQKNIRMCNNKNIIDQIMVPPPASEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYLNNNNHHHQEWNTNNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML

Homology

[Close]

BLAST of MELO3C012626.2 vs. NCBI nr
Match: XP_004139890.2 (PREDICTED: transcription factor JUNGBRUNNEN 1-like [Cucumis sativus] >KGN44268.1 hypothetical protein Csa_7G237830 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 4.8e-22
Identity = 151/167 (90.42%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 1   IFKRNVSGRRYGTSGSNTWNNKQLAAVS---IKNPIIDDQKNI-RMCNNKNIIDQXXXXX 60
           IFKRNVSGRRYGTSGSN WNNKQLAAVS   IKNPIIDDQKNI            XXXXX
Sbjct: 189 IFKRNVSGRRYGTSGSNNWNNKQLAAVSTTAIKNPIIDDQKNIXXXXXXXXXXXXXXXXX 248

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 249 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 308

Query: 121 XXXXXXXXXXSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 164
           XXXXXXXXXXSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML
Sbjct: 309 XXXXXXXXXXSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 355

[Close]

BLAST of MELO3C012626.2 vs. NCBI nr
Match: XP_022952888.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita moschata] >XP_022952889.1 transcription factor JUNGBRUNNEN 1-like [Cucurbita moschata])

HSP 1 Score: 73.2 bits (178), Expect = 9.4e-10
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 127 SGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 164
           SGIISP I YPTNQQLD+NDFFTNSNWDELRS+VDML
Sbjct: 255 SGIISPPIGYPTNQQLDVNDFFTNSNWDELRSVVDML 291

[Close]

BLAST of MELO3C012626.2 vs. NCBI nr
Match: XP_022969465.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita maxima])

HSP 1 Score: 73.2 bits (178), Expect = 9.4e-10
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 127 SGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 164
           SGIISP I YPTNQQLD+NDFFTNSNWDELRS+VDML
Sbjct: 255 SGIISPPIGYPTNQQLDVNDFFTNSNWDELRSVVDML 291

[Close]

BLAST of MELO3C012626.2 vs. NCBI nr
Match: XP_023553947.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.2 bits (178), Expect = 9.4e-10
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 127 SGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 164
           SGIISP I YPTNQQLD+NDFFTNSNWDELRS+VDML
Sbjct: 255 SGIISPPIGYPTNQQLDVNDFFTNSNWDELRSVVDML 291

[Close]

BLAST of MELO3C012626.2 vs. NCBI nr
Match: XP_022930637.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita moschata])

HSP 1 Score: 67.8 bits (164), Expect = 3.9e-08
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 127 SGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 164
           SGIIS  I +PTN+QLD+NDFFTNSNWDELRS+VDML
Sbjct: 258 SGIISAPIAFPTNEQLDVNDFFTNSNWDELRSVVDML 294

[Close]

BLAST of MELO3C012626.2 vs. TrEMBL
Match: tr|A0A0A0K418|A0A0A0K418_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G237830 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.2e-22
Identity = 151/167 (90.42%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 1   IFKRNVSGRRYGTSGSNTWNNKQLAAVS---IKNPIIDDQKNI-RMCNNKNIIDQXXXXX 60
           IFKRNVSGRRYGTSGSN WNNKQLAAVS   IKNPIIDDQKNI            XXXXX
Sbjct: 189 IFKRNVSGRRYGTSGSNNWNNKQLAAVSTTAIKNPIIDDQKNIXXXXXXXXXXXXXXXXX 248

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 249 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 308

Query: 121 XXXXXXXXXXSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 164
           XXXXXXXXXXSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML
Sbjct: 309 XXXXXXXXXXSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 355

The following BLAST results are available for this feature:

BLAST of MELO3C012626.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139890.2	4.8e-22	90.42	PREDICTED: transcription factor JUNGBRUNNEN 1-like [Cucumis sativus] >KGN44268.1...	[more]
XP_022952888.1	9.4e-10	89.19	transcription factor JUNGBRUNNEN 1-like [Cucurbita moschata] >XP_022952889.1 tra...	[more]
XP_022969465.1	9.4e-10	89.19	transcription factor JUNGBRUNNEN 1-like [Cucurbita maxima]	[more]
XP_023553947.1	9.4e-10	89.19	transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930637.1	3.9e-08	81.08	transcription factor JUNGBRUNNEN 1-like [Cucurbita moschata]	[more]

BLAST of MELO3C012626.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C012626.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C012626.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K418\|A0A0A0K418_CUCSA	3.2e-22	90.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G237830 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012626.2.1	MELO3C012626.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C012626.2	Lsi11G016200	Bottle gourd (USVL1VR-Ls)	lsimedB097
MELO3C012626.2	Cla97C09G184120	Watermelon (97103) v2	medwmbB213
MELO3C012626.2	Bhi05G001751	Wax gourd	medwgoB214
MELO3C012626.2	Carg04674	Silver-seed gourd	carmedB0398
MELO3C012626.2	Carg15668	Silver-seed gourd	carmedB0542
MELO3C012626.2	CsaV3_7G022730	Cucumber (Chinese Long) v3	cucmedB539

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012626.2	Wax gourd	medwgoB234
MELO3C012626.2	Cucumber (Gy14) v2	cgybmedB399
MELO3C012626.2	Cucumber (Gy14) v2	cgybmedB468
MELO3C012626.2	Cucumber (Gy14) v1	cgymedB179
MELO3C012626.2	Cucumber (Gy14) v1	cgymedB403
MELO3C012626.2	Cucurbita maxima (Rimu)	cmamedB109
MELO3C012626.2	Cucurbita maxima (Rimu)	cmamedB537
MELO3C012626.2	Cucurbita maxima (Rimu)	cmamedB592
MELO3C012626.2	Cucurbita moschata (Rifu)	cmomedB098
MELO3C012626.2	Cucurbita moschata (Rifu)	cmomedB524
MELO3C012626.2	Cucurbita moschata (Rifu)	cmomedB581
MELO3C012626.2	Cucurbita pepo (Zucchini)	cpemedB264
MELO3C012626.2	Cucurbita pepo (Zucchini)	cpemedB316
MELO3C012626.2	Cucurbita pepo (Zucchini)	cpemedB723
MELO3C012626.2	Wild cucumber (PI 183967)	cpimedB449
MELO3C012626.2	Wild cucumber (PI 183967)	cpimedB526
MELO3C012626.2	Cucumber (Chinese Long) v2	cumedB441
MELO3C012626.2	Cucumber (Chinese Long) v2	cumedB512
MELO3C012626.2	Melon (DHL92) v3.6.1	medmedB042
MELO3C012626.2	Bottle gourd (USVL1VR-Ls)	lsimedB066
MELO3C012626.2	Watermelon (Charleston Gray)	medwcgB174
MELO3C012626.2	Watermelon (Charleston Gray)	medwcgB198
MELO3C012626.2	Watermelon (97103) v1	medwmB199
MELO3C012626.2	Watermelon (97103) v1	medwmB241
MELO3C012626.2	Silver-seed gourd	carmedB0350
MELO3C012626.2	Cucumber (Chinese Long) v3	cucmedB457
MELO3C012626.2	Watermelon (97103) v2	medwmbB172