Lsi11G016200 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi11G016200
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr11 : 24541579 .. 24542961 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTGAAGGAAATGAATGCATTGGTCTTAAGAAAACACTTGTTTATTATCGTGGATCTGCTGGAAAAGGCTCTAAAACTGATTGGATGATGCATGAGTTTCGCCTTCCTCCAGCTTCCAATAACAATCCAAACCATCTCCAACAACCCAATTCCAAGAACTTTGCTCAAGAAGCGGTAAGCCTAAATTTATCCTAATATTCCATCATCAATCATTTAGTGAAAATAGAAAAAAAAAATGTCAAACTATTTATAAAAAATAGCAAAAAAAAAAAAAAAAACACTAATAGACATTGATAGACTTCTATTAGCATCCATCAATAATAGACTTTTATTATTTCTATCACCGATAGTCCCTGATAGACTTATATCAATGTCTATCGCAACTATCTACAAATTTTGCTATTTTGTGTAAATAGTTTTCCTTATTTTTCTATTTTTATAAACTTCCCATAATTCTTTAGAAAATTTTTAAAAATAAAACAATAAGGGAAACTATTTACACAAAATAGTAAAATTTTTAGATAGTTGTGATAGACGCTGAAAGAAGTTTATTAGGATCTATCCATTATAGAAATGATAGAAATCTATCGCTGATAGATGCTAATAGAAGTCTATCAATATCTATCGGTATTTTTTTTTTTTTTTTCTGTTAATAGTTTGACATTTTTTCTATCTATGAAAATTTTCCTTTTTTTCTTTTTGCAATAATAATTAAGTTACACTTAATCTCATGAGTCACACTCAAGTTTTTTTTTTAAAATATTATTATTATTATATATAGTTAGCTAATAAATTTTGATTATTGTGGATGTTCAAAAGGAAATTTGGACATTGTGTAGGATATTCAAGAGGAATGTGAGTGGGAGAAGATATGGATCATCAGGAAATTGGAATAACAAGCAGGCGGCGGCAGCAGCAACAACAATCAAAAACCCTATGAATGTAGAAAAGAACAGTGAAATTATGATGGGATCAGGAGCTGGTGCTGAAAAAGGTAATAATAATAATGGAGAAATTAGTTACATCAACTTCAGCTGTGAATCCATGATTATCCAGACAGAGAAGAAGCCATTACTTCTTGATCAAAATTACCTCAACCACAATAATAATAATCATTATCAAGAATGGAATAGCAATAGCAATAATAATAATAATAATAACTATGATCAATATAGCAGCTGTTCTTCAAGTGGTATTATTTCACCTCCAATTGCTTACCCAACAAATCAGCTTGTTGATGTCAATGATTTCTTCACTAATAGCAATTGGGATGAGCTGAGATCAATGGTGGACATGTTGTAGATCCAGATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAAAATCCATCACATAATTCTCT

mRNA sequence

ATGGAGGAAATTTGGACATTGTGTAGGATATTCAAGAGGAATGTGAGTGGGAGAAGATATGGATCATCAGGAAATTGGAATAACAAGCAGGCGGCGGCAGCAGCAACAACAATCAAAAACCCTATGAATGTAGAAAAGAACAGTGAAATTATGATGGGATCAGGAGCTGGTGCTGAAAAAGGTAATAATAATAATGGAGAAATTAGTTACATCAACTTCAGCTGTGAATCCATGATTATCCAGACAGAGAAGAAGCCATTACTTCTTGATCAAAATTACCTCAACCACAATAATAATAATCATTATCAAGAATGGAATAGCAATAGCAATAATAATAATAATAATAACTATGATCAATATAGCAGCTGTTCTTCAAGTGGTATTATTTCACCTCCAATTGCTTACCCAACAAATCAGCTTGTTGATGTCAATGATTTCTTCACTAATAGCAATTGGGATGAGCTGAGATCAATGGTGGACATGTTGTAGATCCAGATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAAAATCCATCACATAATTCTCT

Coding sequence (CDS)

ATGGAGGAAATTTGGACATTGTGTAGGATATTCAAGAGGAATGTGAGTGGGAGAAGATATGGATCATCAGGAAATTGGAATAACAAGCAGGCGGCGGCAGCAGCAACAACAATCAAAAACCCTATGAATGTAGAAAAGAACAGTGAAATTATGATGGGATCAGGAGCTGGTGCTGAAAAAGGTAATAATAATAATGGAGAAATTAGTTACATCAACTTCAGCTGTGAATCCATGATTATCCAGACAGAGAAGAAGCCATTACTTCTTGATCAAAATTACCTCAACCACAATAATAATAATCATTATCAAGAATGGAATAGCAATAGCAATAATAATAATAATAATAACTATGATCAATATAGCAGCTGTTCTTCAAGTGGTATTATTTCACCTCCAATTGCTTACCCAACAAATCAGCTTGTTGATGTCAATGATTTCTTCACTAATAGCAATTGGGATGAGCTGAGATCAATGGTGGACATGTTGTAG

Protein sequence

MEEIWTLCRIFKRNVSGRRYGSSGNWNNKQAAAAATTIKNPMNVEKNSEIMMGSGAGAEKGNNNNGEISYINFSCESMIIQTEKKPLLLDQNYLNHNNNNHYQEWNSNSNNNNNNNYDQYSSCSSSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML
Homology
[Close]
BLAST of Lsi11G016200 vs. TrEMBL
Match: A0A0A0K418_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G237830 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.5e-50
Identity = 122/179 (68.16%), Postives = 140/179 (78.21%), Query Frame = 1 

Query: 3   EIWTLCRIFKRNVSGRRYGSSG--NWNNKQAAAAATT-IKNPM-NVEKNSEIMMGSGA-- 62
           EIWTLCRIFKRNVSGRRYG+SG  NWNNKQ AA +TT IKNP+ + +KN  +   +    
Sbjct: 182 EIWTLCRIFKRNVSGRRYGTSGSNNWNNKQLAAVSTTAIKNPIIDDQKNIRLCSNNNIVD 241

Query: 63  -------GAEKGNNNN---GEISYINFS-CES-MIIQTEKKPLLLD-QNYLNHNNNNHYQ 122
                   +EKGNNNN   GEISYINFS C+S MIIQTEKKPLLLD  NYLN+N+++H+Q
Sbjct: 242 QIIVPPPASEKGNNNNNNNGEISYINFSSCDSSMIIQTEKKPLLLDPNNYLNNNHHHHHQ 301

Query: 123 EWNSNSNNNNNNNYDQYSSCSSSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
           EWN+N     NN+YDQYSSCSSSGIISP I YPTNQ +D+NDFFTNSNWDELRSMVDML
Sbjct: 302 EWNTN-----NNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 355

[Close]
BLAST of Lsi11G016200 vs. NCBI nr
Match: gi|778725979|ref|XP_004139890.2| (PREDICTED: transcription factor JUNGBRUNNEN 1-like [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 3.6e-50
Identity = 122/179 (68.16%), Postives = 140/179 (78.21%), Query Frame = 1 

Query: 3   EIWTLCRIFKRNVSGRRYGSSG--NWNNKQAAAAATT-IKNPM-NVEKNSEIMMGSGA-- 62
           EIWTLCRIFKRNVSGRRYG+SG  NWNNKQ AA +TT IKNP+ + +KN  +   +    
Sbjct: 182 EIWTLCRIFKRNVSGRRYGTSGSNNWNNKQLAAVSTTAIKNPIIDDQKNIRLCSNNNIVD 241

Query: 63  -------GAEKGNNNN---GEISYINFS-CES-MIIQTEKKPLLLD-QNYLNHNNNNHYQ 122
                   +EKGNNNN   GEISYINFS C+S MIIQTEKKPLLLD  NYLN+N+++H+Q
Sbjct: 242 QIIVPPPASEKGNNNNNNNGEISYINFSSCDSSMIIQTEKKPLLLDPNNYLNNNHHHHHQ 301

Query: 123 EWNSNSNNNNNNNYDQYSSCSSSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
           EWN+N     NN+YDQYSSCSSSGIISP I YPTNQ +D+NDFFTNSNWDELRSMVDML
Sbjct: 302 EWNTN-----NNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 355

[Close]
BLAST of Lsi11G016200 vs. NCBI nr
Match: gi|1009130110|ref|XP_015882119.1| (PREDICTED: transcription factor JUNGBRUNNEN 1 [Ziziphus jujuba])

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-06
Identity = 60/172 (34.88%), Postives = 85/172 (49.42%), Query Frame = 1 

Query: 3   EIWTLCRIFKRNVSGRRYGSSGNWNNKQAA-----AAATTIKNPMNVEKNSEIMMGSGAG 62
           EIWTLCRIFKRN+S R+Y  + +W    A      A  T+ K  MN ++ S         
Sbjct: 174 EIWTLCRIFKRNMSYRKY--TPDWRELSAKRQPMDALITSKKCNMNDDQYS--------- 233

Query: 63  AEKGNNNNGEISYINFSCESMIIQTEKKPLLLDQNYLNHNNNNHYQEWNSNSNNNNNNNY 122
               N NNGE SYI+FS   +I   +KKP++L        N++H+     N   NNNNN 
Sbjct: 234 ----NRNNGE-SYIDFSA-PIIYHEDKKPVIL--------NHHHHHINVGNGITNNNNNQ 293

Query: 123 DQYSSCSSSGIISPPIAYPT--------NQLVDV-NDFFTNSNWDELRSMVD 161
                  SS + +    +P+        +   D+ N+ F +++WDELRS VD
Sbjct: 294 LHVGQALSSSMAATQYHHPSYLNSLSSFSSYEDIENELFMHADWDELRSAVD 320

The following BLAST results are available for this feature:
BLAST of Lsi11G016200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi11G016200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K418_CUCSA2.5e-5068.16Uncharacterized protein OS=Cucumis sativus GN=Csa_7G237830 PE=4 SV=1[more]
BLAST of Lsi11G016200 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi11G016200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778725979|ref|XP_004139890.2|3.6e-5068.16PREDICTED: transcription factor JUNGBRUNNEN 1-like [Cucumis sativus][more]
gi|1009130110|ref|XP_015882119.1|2.5e-0634.88PREDICTED: transcription factor JUNGBRUNNEN 1 [Ziziphus jujuba][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G016200.1Lsi11G016200.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi11G016200MELO3C012626Melon (DHL92) v3.5.1lsimeB091
Lsi11G016200MELO3C012626.2Melon (DHL92) v3.6.1lsimedB097
Lsi11G016200CsaV3_7G022730Cucumber (Chinese Long) v3cuclsiB533
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi11G016200Silver-seed gourdcarlsiB029
Lsi11G016200Silver-seed gourdcarlsiB306
Lsi11G016200Silver-seed gourdcarlsiB352
Lsi11G016200Silver-seed gourdcarlsiB484
Lsi11G016200Cucumber (Chinese Long) v3cuclsiB452
Lsi11G016200Cucumber (Chinese Long) v3cuclsiB456
Lsi11G016200Watermelon (97103) v2lsiwmbB088
Lsi11G016200Watermelon (97103) v2lsiwmbB109
Lsi11G016200Wax gourdlsiwgoB114
Lsi11G016200Wax gourdlsiwgoB126
Lsi11G016200Bottle gourd (USVL1VR-Ls)lsilsiB023
Lsi11G016200Cucumber (Gy14) v1cgylsiB180
Lsi11G016200Cucumber (Gy14) v1cgylsiB392
Lsi11G016200Cucurbita maxima (Rimu)cmalsiB101
Lsi11G016200Cucurbita maxima (Rimu)cmalsiB474
Lsi11G016200Cucurbita maxima (Rimu)cmalsiB516
Lsi11G016200Cucurbita maxima (Rimu)cmalsiB559
Lsi11G016200Cucurbita moschata (Rifu)cmolsiB087
Lsi11G016200Cucurbita moschata (Rifu)cmolsiB459
Lsi11G016200Cucurbita moschata (Rifu)cmolsiB497
Lsi11G016200Cucurbita moschata (Rifu)cmolsiB543
Lsi11G016200Cucurbita pepo (Zucchini)cpelsiB201
Lsi11G016200Cucurbita pepo (Zucchini)cpelsiB234
Lsi11G016200Cucurbita pepo (Zucchini)cpelsiB531
Lsi11G016200Cucurbita pepo (Zucchini)cpelsiB608
Lsi11G016200Wild cucumber (PI 183967)cpilsiB429
Lsi11G016200Wild cucumber (PI 183967)cpilsiB511
Lsi11G016200Cucumber (Chinese Long) v2culsiB426
Lsi11G016200Cucumber (Chinese Long) v2culsiB499
Lsi11G016200Melon (DHL92) v3.5.1lsimeB085
Lsi11G016200Watermelon (Charleston Gray)lsiwcgB076
Lsi11G016200Watermelon (Charleston Gray)lsiwcgB099
Lsi11G016200Watermelon (97103) v1lsiwmB089
Lsi11G016200Watermelon (97103) v1lsiwmB108
Lsi11G016200Cucumber (Gy14) v2cgyblsiB390
Lsi11G016200Cucumber (Gy14) v2cgyblsiB468
Lsi11G016200Melon (DHL92) v3.6.1lsimedB092