MELO3C012626.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012626.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr01 : 21652267 .. 21653080 (+)
Sequence length	814

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATATTCAAGAGGAATGTGAGCGGGAGAAGATATGGAACATCAGGAAGTAATACTTGGAATAACAAGCAATTAGCAGCAGTATCAATCAAAAACCCCATCATAGATGATCAAAAGAACATAAGGATGTGCAATAACAAGAATATTATTGATCAAATTATGGTGCCACCACCAGCTTCTGAAAAAGGTAACAGCAACAATAATAATAATGGTGAAATCAGTTACATCAACTTCAGCAGCTGTGAATCGTCCATGATTATCCAAACTGAGAAGAAGCCACTACTTCTTGATCCAAATAATTACCTCAACAACAACAATCATCATCATCAAGAATGGAATACCAATAATAATAGTTATGATCAATATAGCAGCTGCTCTTCAAGTGGTATTATTTCACCTTCAATTCCTTATCCAACAAATCAGCAGCTTGATATCAATGATTTCTTCACTAATAGCAATTGGGATGAGCTCAGATCAATGGTGGATATGTTGTAAGATTATTGCTCTTTTCTTCTTCATCATTATTGTTGATCTTTTTATCGTCCATTGTGTAAATATATACAACACACCTCATCTCTCTCAACACAAGGTACAGCCTTTATCAATATTGCTCGACATATCATTCATCTCACCAATTCAAATTAAAGGAAGGGCAATTGATCAGAAGAAGCAAAGGATTATTGGGTTTGGAATTTTCTTTTATCATCATTACATTCAATAATCCAACTACTATTTTAGGATTAATCATCATATACTTTAGATTTTATATATATAGCTGGGTTGATTCCTCCCTTGTGAATATATTATATATATAGT

mRNA sequence

GATATTCAAGAGGAATGTGAGCGGGAGAAGATATGGAACATCAGGAAGTAATACTTGGAATAACAAGCAATTAGCAGCAGTATCAATCAAAAACCCCATCATAGATGATCAAAAGAACATAAGGATGTGCAATAACAAGAATATTATTGATCAAATTATGGTGCCACCACCAGCTTCTGAAAAAGGTAACAGCAACAATAATAATAATGGTGAAATCAGTTACATCAACTTCAGCAGCTGTGAATCGTCCATGATTATCCAAACTGAGAAGAAGCCACTACTTCTTGATCCAAATAATTACCTCAACAACAACAATCATCATCATCAAGAATGGAATACCAATAATAATAGTTATGATCAATATAGCAGCTGCTCTTCAAGTGGTATTATTTCACCTTCAATTCCTTATCCAACAAATCAGCAGCTTGATATCAATGATTTCTTCACTAATAGCAATTGGGATGAGCTCAGATCAATGGTGGATATGTTGTAAGATTATTGCTCTTTTCTTCTTCATCATTATTGTTGATCTTTTTATCGTCCATTGTGTAAATATATACAACACACCTCATCTCTCTCAACACAAGGTACAGCCTTTATCAATATTGCTCGACATATCATTCATCTCACCAATTCAAATTAAAGGAAGGGCAATTGATCAGAAGAAGCAAAGGATTATTGGGTTTGGAATTTTCTTTTATCATCATTACATTCAATAATCCAACTACTATTTTAGGATTAATCATCATATACTTTAGATTTTATATATATAGCTGGGTTGATTCCTCCCTTGTGAATATATTATATATATAGT

Coding sequence (CDS)

ATATTCAAGAGGAATGTGAGCGGGAGAAGATATGGAACATCAGGAAGTAATACTTGGAATAACAAGCAATTAGCAGCAGTATCAATCAAAAACCCCATCATAGATGATCAAAAGAACATAAGGATGTGCAATAACAAGAATATTATTGATCAAATTATGGTGCCACCACCAGCTTCTGAAAAAGGTAACAGCAACAATAATAATAATGGTGAAATCAGTTACATCAACTTCAGCAGCTGTGAATCGTCCATGATTATCCAAACTGAGAAGAAGCCACTACTTCTTGATCCAAATAATTACCTCAACAACAACAATCATCATCATCAAGAATGGAATACCAATAATAATAGTTATGATCAATATAGCAGCTGCTCTTCAAGTGGTATTATTTCACCTTCAATTCCTTATCCAACAAATCAGCAGCTTGATATCAATGATTTCTTCACTAATAGCAATTGGGATGAGCTCAGATCAATGGTGGATATGTTGTAA

Protein sequence

IFKRNVSGRRYGTSGSNTWNNKQLAAVSIKNPIIDDQKNIRMCNNKNIIDQIMVPPPASEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYLNNNNHHHQEWNTNNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML

Homology

[Close]

BLAST of MELO3C012626.2.1 vs. NCBI nr
Match: XP_004139890.2 (PREDICTED: transcription factor JUNGBRUNNEN 1-like [Cucumis sativus] >KGN44268.1 hypothetical protein Csa_7G237830 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 4.8e-22
Identity = 151/167 (90.42%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 1   IFKRNVSGRRYGTSGSNTWNNKQLAAVS---IKNPIIDDQKNI-RMCNNKNIIDQXXXXX 60
           IFKRNVSGRRYGTSGSN WNNKQLAAVS   IKNPIIDDQKNI            XXXXX
Sbjct: 189 IFKRNVSGRRYGTSGSNNWNNKQLAAVSTTAIKNPIIDDQKNIXXXXXXXXXXXXXXXXX 248

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 249 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 308

Query: 121 XXXXXXXXXXSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 164
           XXXXXXXXXXSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML
Sbjct: 309 XXXXXXXXXXSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 355

[Close]

BLAST of MELO3C012626.2.1 vs. NCBI nr
Match: XP_022952888.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita moschata] >XP_022952889.1 transcription factor JUNGBRUNNEN 1-like [Cucurbita moschata])

HSP 1 Score: 73.2 bits (178), Expect = 9.4e-10
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 127 SGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 164
           SGIISP I YPTNQQLD+NDFFTNSNWDELRS+VDML
Sbjct: 255 SGIISPPIGYPTNQQLDVNDFFTNSNWDELRSVVDML 291

[Close]

BLAST of MELO3C012626.2.1 vs. NCBI nr
Match: XP_022969465.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita maxima])

HSP 1 Score: 73.2 bits (178), Expect = 9.4e-10
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 127 SGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 164
           SGIISP I YPTNQQLD+NDFFTNSNWDELRS+VDML
Sbjct: 255 SGIISPPIGYPTNQQLDVNDFFTNSNWDELRSVVDML 291

[Close]

BLAST of MELO3C012626.2.1 vs. NCBI nr
Match: XP_023553947.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.2 bits (178), Expect = 9.4e-10
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 127 SGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 164
           SGIISP I YPTNQQLD+NDFFTNSNWDELRS+VDML
Sbjct: 255 SGIISPPIGYPTNQQLDVNDFFTNSNWDELRSVVDML 291

[Close]

BLAST of MELO3C012626.2.1 vs. NCBI nr
Match: XP_022930637.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita moschata])

HSP 1 Score: 67.8 bits (164), Expect = 3.9e-08
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 127 SGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 164
           SGIIS  I +PTN+QLD+NDFFTNSNWDELRS+VDML
Sbjct: 258 SGIISAPIAFPTNEQLDVNDFFTNSNWDELRSVVDML 294

[Close]

BLAST of MELO3C012626.2.1 vs. TrEMBL
Match: tr|A0A0A0K418|A0A0A0K418_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G237830 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.2e-22
Identity = 151/167 (90.42%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 1   IFKRNVSGRRYGTSGSNTWNNKQLAAVS---IKNPIIDDQKNI-RMCNNKNIIDQXXXXX 60
           IFKRNVSGRRYGTSGSN WNNKQLAAVS   IKNPIIDDQKNI            XXXXX
Sbjct: 189 IFKRNVSGRRYGTSGSNNWNNKQLAAVSTTAIKNPIIDDQKNIXXXXXXXXXXXXXXXXX 248

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 249 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 308

Query: 121 XXXXXXXXXXSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 164
           XXXXXXXXXXSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML
Sbjct: 309 XXXXXXXXXXSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 355

The following BLAST results are available for this feature:

BLAST of MELO3C012626.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139890.2	4.8e-22	90.42	PREDICTED: transcription factor JUNGBRUNNEN 1-like [Cucumis sativus] >KGN44268.1...	[more]
XP_022952888.1	9.4e-10	89.19	transcription factor JUNGBRUNNEN 1-like [Cucurbita moschata] >XP_022952889.1 tra...	[more]
XP_022969465.1	9.4e-10	89.19	transcription factor JUNGBRUNNEN 1-like [Cucurbita maxima]	[more]
XP_023553947.1	9.4e-10	89.19	transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930637.1	3.9e-08	81.08	transcription factor JUNGBRUNNEN 1-like [Cucurbita moschata]	[more]

BLAST of MELO3C012626.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C012626.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C012626.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K418\|A0A0A0K418_CUCSA	3.2e-22	90.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G237830 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C012626.2	MELO3C012626.2	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012626.2.1.exon.1	MELO3C012626.2.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012626.2.1.five_prime_UTR.1	MELO3C012626.2.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012626.2.1.CDS.1	MELO3C012626.2.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012626.2.1.three_prime_UTR.1	MELO3C012626.2.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C012626.2.1	MELO3C012626.2.1-protein	polypeptide