MELO3C011382 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C011382
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative retroelement pol polyprotein
Locationchr3 : 24183281 .. 24183870 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCTATGCAGAGATCCTACTAATGGTTTGCAGTATTCTAGAATTGAAAAGGTTGACAGGATTTATGACTTTCTTACTGGTCTTAATCCTAAGTTTGATGTCGTTCGAGGGCATATACTAGGCAAGAGACCAATTCCCTCCTTGATGGAAGTCTGTTCTGAAATTTGCCTCGAGGAAGATCGCACAAGTGCTATGAATATCTCTACAACTCCTTCTATTGACTCAGTTGCTTTTACTGCAAGGTCCTCTACCAGTGGCAATGACAAGCACAATGGAAAACCAATTCCTATCCGTGAGCCTTGTAAACAACAATGGCATACCAAAGAACAGTGTTCGAAGTTACATGGTCGTCCCCTAGGAGATAAGAAACGCCCTTCCAACGACAAACAAAACACAGGGCGGACATATGTGAGTGAATTTGTTGGACCTTCTCAACCACCTGAGTCACAAGGGAACCAGATCGATCATGGTCCCACTACTCTAGGTGTCATTGTCCAATCAGGTATACCTCAATCCTCCAGTCTTATTTGTGTTAATGGGAAGAACCCCTGGATTCTGGATTCTGGCACCACAGATCATTTGACTAG

mRNA sequence

ATGAGCCTATGCAGAGATCCTACTAATGGTTTGCAGTATTCTAGAATTGAAAAGGTTGACAGGATTTATGACTTTCTTACTGGTCTTAATCCTAAGTTTGATGTCGTTCGAGGGCATATACTAGGCAAGAGACCAATTCCCTCCTTGATGGAAGTCTGTTCTGAAATTTGCCTCGAGGAAGATCGCACAAGTGCTATGAATATCTCTACAACTCCTTCTATTGACTCAGTTGCTTTTACTGCAAGGTCCTCTACCAGTGGCAATGACAAGCACAATGGAAAACCAATTCCTATCCGTGAGCCTTGTAAACAACAATGGCATACCAAAGAACAGTGTTCGAAGTTACATGGTCGTCCCCTAGGAGATAAGAAACGCCCTTCCAACGACAAACAAAACACAGGGCGGACATATGTGAGTGAATTTGTTGGACCTTCTCAACCACCTGAGTCACAAGGGAACCAGATCGATCATGGTCCCACTACTCTAGGTGTCATTGTCCAATCAGAACCCCTGGATTCTGGATTCTGGCACCACAGATCATTTGACTAG

Coding sequence (CDS)

ATGAGCCTATGCAGAGATCCTACTAATGGTTTGCAGTATTCTAGAATTGAAAAGGTTGACAGGATTTATGACTTTCTTACTGGTCTTAATCCTAAGTTTGATGTCGTTCGAGGGCATATACTAGGCAAGAGACCAATTCCCTCCTTGATGGAAGTCTGTTCTGAAATTTGCCTCGAGGAAGATCGCACAAGTGCTATGAATATCTCTACAACTCCTTCTATTGACTCAGTTGCTTTTACTGCAAGGTCCTCTACCAGTGGCAATGACAAGCACAATGGAAAACCAATTCCTATCCGTGAGCCTTGTAAACAACAATGGCATACCAAAGAACAGTGTTCGAAGTTACATGGTCGTCCCCTAGGAGATAAGAAACGCCCTTCCAACGACAAACAAAACACAGGGCGGACATATGTGAGTGAATTTGTTGGACCTTCTCAACCACCTGAGTCACAAGGGAACCAGATCGATCATGGTCCCACTACTCTAGGTGTCATTGTCCAATCAGAACCCCTGGATTCTGGATTCTGGCACCACAGATCATTTGACTAG

Protein sequence

MSLCRDPTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEEDRTSAMNISTTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPLGDKKRPSNDKQNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQSEPLDSGFWHHRSFD*
Homology
[Close]
BLAST of MELO3C011382 vs. TrEMBL
Match: A5AYJ3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041073 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.7e-16
Identity = 55/158 (34.81%), Postives = 85/158 (53.80%), Query Frame = 1 

Query: 7   PTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEEDRTSAM 66
           P + +++ + E+ DR+Y FL  LN   D VRG ILG++P+PS+ EV SE+  EE R   M
Sbjct: 166 PNDSVRHKKREENDRVYVFLAALNHNLDEVRGRILGRKPLPSIREVFSEVRREEARRKVM 225

Query: 67  ----NISTTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPLGD 126
                  + P I+S A  ++ S    D+   +  P  + CK+ WHTK  C K+HG+P   
Sbjct: 226 LTDPEPMSNPEIESSALVSKGSDLDGDR---RKKPWCDHCKKPWHTKGTCWKIHGKPQNF 285

Query: 127 KKRPSNDKQNTGRTYVSEFVGP---SQPPESQGNQIDH 158
           KK+  +D +   +T  ++  GP   S+ P     Q+ H
Sbjct: 286 KKKNGSDGR-AFQTMSADSQGPQINSEKPNFTKEQLSH 319

[Close]
BLAST of MELO3C011382 vs. TrEMBL
Match: A0A0V0HUD0_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.8e-16
Identity = 55/143 (38.46%), Postives = 76/143 (53.15%), Query Frame = 1 

Query: 17  EKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEEDRTSAM-----NISTT 76
           E+  R+Y FL GLN +FD VR  ILGK P+PSL E  SE+  EE R   M     N+   
Sbjct: 192 EENXRVYLFLAGLNREFDEVRSRILGKNPLPSLRETFSEVRREETRRKVMLKPDLNVELK 251

Query: 77  PSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPLGDKKRPSNDK- 136
           P IDS A    +  +G DK+     P  + CK+ WHT+E C K+HG+PL  KK+  +D+ 
Sbjct: 252 PVIDSSALV--TVKNGEDKNKR---PWCDHCKKYWHTRETCWKIHGKPLNWKKKGVDDRG 311

Query: 137 --QNTGRTYVSEFVGPSQPPESQ 152
                G+   + +    Q P  +
Sbjct: 312 FQSQNGQALQTTYFDQGQQPSPE 329

[Close]
BLAST of MELO3C011382 vs. TrEMBL
Match: A5BAZ3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004170 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.8e-16
Identity = 53/140 (37.86%), Postives = 76/140 (54.29%), Query Frame = 1 

Query: 13  YSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEEDRTSAMNIS--- 72
           Y +I +  R++ F  GLN +FD VRG I+G +P+PSL E  SE+  EE R   +  S   
Sbjct: 166 YKKIVEQKRLFKFFLGLNREFDDVRGRIMGIKPLPSLREAFSEVRREESRKKVIMGSKEQ 225

Query: 73  TTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPLGDKKRPSND 132
             P++D+ AF ARS  S       +  P  + CK+  H KE C KLHG+P   K +P +D
Sbjct: 226 PAPTLDASAFAARSFNSSGGDRQKRDRPWCDYCKKPGHYKEACWKLHGKPADWKPKPRSD 285

Query: 133 KQNTGRTYVSEFVGPSQPPE 150
           +   GR +V+     +  PE
Sbjct: 286 RD--GRAHVAANSASTSVPE 303

[Close]
BLAST of MELO3C011382 vs. TrEMBL
Match: A5ALH5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004341 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-15
Identity = 52/138 (37.68%), Postives = 77/138 (55.80%), Query Frame = 1 

Query: 7   PTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEEDRTSAM 66
           P +GL Y ++ + +RIY FL GLN   D VRG +L  +P+PS+ EV SEI  EE R   M
Sbjct: 172 PEDGLLYKKVIEKERIYKFLLGLNKNLDEVRGRVLSIKPLPSVREVFSEIRREESRQKVM 231

Query: 67  --NISTTPSIDSVAFTARSSTSGNDKHNGKP-IPIREPCKQQWHTKEQCSKLHGRPLGDK 126
               +++ ++++ A  AR + S N+ H  K   P    C++  H K  C  LHG+P+  K
Sbjct: 232 LGTXNSSKNLENSALVARGTQSNNNNHQTKKNRPWCXHCRKPGHXKXTCWHLHGKPVDWK 291

Query: 127 -KRPSNDKQNTGRTYVSE 141
             RP  +K+  G T  +E
Sbjct: 292 PSRPQQNKEGRGYTATAE 309

[Close]
BLAST of MELO3C011382 vs. TrEMBL
Match: A5B5M2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040578 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.3e-15
Identity = 52/129 (40.31%), Postives = 75/129 (58.14%), Query Frame = 1 

Query: 7   PTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEEDRTSAM 66
           P +GL Y ++ + +RIY FL GLN   D VRG +L  +P+PS+ EV SEI  EE R   M
Sbjct: 172 PEDGLLYKKVIEKERIYKFLLGLNKNLDEVRGRVLSIKPLPSVREVFSEIRREESRQKVM 231

Query: 67  --NISTTPSIDSVAFTARSSTSGNDKHNGKP-IPIREPCKQQWHTKEQCSKLHGRPLGDK 126
               +++ ++++ A  AR + S N+ H  K   P  + C++  HTKE C  LHG+P   K
Sbjct: 232 LGTQNSSKNLENSALVARGTQSNNNXHQTKKNRPWCDHCRKPGHTKETCWHLHGKPADWK 291

Query: 127 KRPSNDKQN 133
             PS  +QN
Sbjct: 292 --PSRPQQN 298

[Close]
BLAST of MELO3C011382 vs. NCBI nr
Match: gi|659120823|ref|XP_008460367.1| (PREDICTED: uncharacterized protein LOC103499210 [Cucumis melo])

HSP 1 Score: 209.1 bits (531), Expect = 6.3e-51
Identity = 106/158 (67.09%), Postives = 122/158 (77.22%), Query Frame = 1 

Query: 11  LQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEEDRTSAMNIST 70
           LQYSR+E++DRIY FL GLNPKFD+VRGHIL +RPIPSLMEV  EI LEE+ TSA++I  
Sbjct: 35  LQYSRMEEIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSAVSILA 94

Query: 71  TPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPLGDKKRPSNDK 130
           TP+ID  AF+ARSS SG+DKH+ KPIP+ E  K+QWHTKE+  KLHGR  G KKR  NDK
Sbjct: 95  TPNIDFAAFSARSSNSGSDKHDRKPIPVCENSKKQWHTKERYWKLHGRSPGGKKRDPNDK 154

Query: 131 QNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS 169
           QNTG  YVSE  GPSQP +  GNQ    P TLG IVQS
Sbjct: 155 QNTGWAYVSESSGPSQPLDPHGNQTYFSPATLGAIVQS 192

[Close]
BLAST of MELO3C011382 vs. NCBI nr
Match: gi|659125044|ref|XP_008462481.1| (PREDICTED: uncharacterized protein LOC103500824 [Cucumis melo])

HSP 1 Score: 189.9 bits (481), Expect = 4.0e-45
Identity = 94/173 (54.34%), Postives = 119/173 (68.79%), Query Frame = 1 

Query: 1   MSLCRD-----PTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSE 60
           M LCR+     P +G QY+ +E+ D  YDF  GLNPKFD V G ILG+RP+ S++EVC E
Sbjct: 1   MDLCRETIWDIPNDGTQYAELEEADHDYDFFAGLNPKFDTVCGRILGQRPLSSIIEVCFE 60

Query: 61  ICLEEDRTSAMNISTTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKL 120
           +CLEEDRT+AM + TTP+ID VAF+ARSS   +DK+NGK I + E CK+QWHTK++C KL
Sbjct: 61  VCLEEDRTNAMGVLTTPTIDIVAFSARSSNHDSDKNNGKLISVCEHCKKQWHTKDRCWKL 120

Query: 121 HGRPLGDKKRPSNDKQNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS 169
           HGRP G KK+ SN+KQN+GR Y+SE    S    +          TLG I QS
Sbjct: 121 HGRPPGGKKQSSNEKQNSGRAYISETTLASTSQSTGPIASQTKTPTLGAIAQS 173

[Close]
BLAST of MELO3C011382 vs. NCBI nr
Match: gi|659114444|ref|XP_008457057.1| (PREDICTED: uncharacterized protein LOC103496827 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 66/120 (55.00%), Postives = 84/120 (70.00%), Query Frame = 1 

Query: 50  MEVCSEICLEEDRTSAMNISTTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTK 109
           MEVC ++ LEEDRT+AM++ TTP+IDS AF+ARSS   ++K+NGK I +   CK+QWHTK
Sbjct: 1   MEVCFKVRLEEDRTNAMDVLTTPTIDSAAFSARSSNHDSNKNNGKSIHVCGHCKKQWHTK 60

Query: 110 EQCSKLHGRPLGDKKRPSNDKQNTGRTYVSEFVGPSQPPESQGNQIDHGPT-TLGVIVQS 169
           EQC KLH RP   KK+ SN+KQN+GR Y+SE   P+   +S G       T TL VI QS
Sbjct: 61  EQCWKLHNRPPEGKKQSSNEKQNSGRVYISE-TTPASTSQSTGPTASQTKTLTLCVIAQS 119

[Close]
BLAST of MELO3C011382 vs. NCBI nr
Match: gi|731392713|ref|XP_010651194.1| (PREDICTED: uncharacterized protein LOC104879574 [Vitis vinifera])

HSP 1 Score: 99.0 bits (245), Expect = 9.2e-18
Identity = 57/158 (36.08%), Postives = 87/158 (55.06%), Query Frame = 1 

Query: 7   PTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEEDRTSAM 66
           P + +++ + E+ DR+Y FL GLN   D VRG ILG++P+PS+ EV SE+  EE R   M
Sbjct: 182 PNDSVRHKKREENDRVYVFLAGLNHNLDEVRGRILGRKPLPSIREVFSEVRREEARRKVM 241

Query: 67  ----NISTTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPLGD 126
                  + P I+S A  ++ S    D+   +  P  + CK+ WHTKE C K+HG+P   
Sbjct: 242 LTDPEPKSNPEIESSALVSKGSDLDGDR---RKKPWCDHCKKPWHTKETCWKIHGKPQNF 301

Query: 127 KKRPSNDKQNTGRTYVSEFVGP---SQPPESQGNQIDH 158
           KK+  +D +   +T  ++  GP   S+ P     Q+ H
Sbjct: 302 KKKNGSDGR-AFQTMSADSQGPQINSEKPNFTKEQLSH 335

[Close]
BLAST of MELO3C011382 vs. NCBI nr
Match: gi|985452899|ref|XP_006481138.2| (PREDICTED: uncharacterized protein LOC102612481 [Citrus sinensis])

HSP 1 Score: 97.1 bits (240), Expect = 3.5e-17
Identity = 52/150 (34.67%), Postives = 77/150 (51.33%), Query Frame = 1 

Query: 7   PTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEEDRTSAM 66
           P +  +Y +  +  R++ FL GLN   D VRG +LG++P+PS+ EV SE+  EE R   M
Sbjct: 181 PNDSARYKKKVEQSRVFVFLAGLNIDLDEVRGRVLGRKPLPSIREVFSEVRREEARRHVM 240

Query: 67  NISTTP---SIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPLGDK 126
                     +D  A  AR +    D+  GK  P  + C++ WHT+E C KLHG+P   K
Sbjct: 241 LKRVEEPKTDLDGSALVARGNEQQGDRRGGKQRPWCDHCRKPWHTRESCWKLHGKPANWK 300

Query: 127 KRPSNDKQNTG--RTYVSEFVGPSQPPESQ 152
           K+  +D +  G  R +      P Q   S+
Sbjct: 301 KKSGDDARPAGDNRAFQVSTTNPEQQSSSE 330

The following BLAST results are available for this feature:
BLAST of MELO3C011382 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AYJ3_VITVI2.7e-1634.81Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041073 PE=4 SV=1[more]
A0A0V0HUD0_SOLCH7.8e-1638.46Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1[more]
A5BAZ3_VITVI7.8e-1637.86Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004170 PE=4 SV=1[more]
A5ALH5_VITVI1.7e-1537.68Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004341 PE=4 SV=1[more]
A5B5M2_VITVI2.3e-1540.31Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040578 PE=4 SV=1[more]
BLAST of MELO3C011382 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659120823|ref|XP_008460367.1|6.3e-5167.09PREDICTED: uncharacterized protein LOC103499210 [Cucumis melo][more]
gi|659125044|ref|XP_008462481.1|4.0e-4554.34PREDICTED: uncharacterized protein LOC103500824 [Cucumis melo][more]
gi|659114444|ref|XP_008457057.1|1.2e-2555.00PREDICTED: uncharacterized protein LOC103496827 [Cucumis melo][more]
gi|731392713|ref|XP_010651194.1|9.2e-1836.08PREDICTED: uncharacterized protein LOC104879574 [Vitis vinifera][more]
gi|985452899|ref|XP_006481138.2|3.5e-1734.67PREDICTED: uncharacterized protein LOC102612481 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU43795melon EST collection version 4.0transcribed_cluster
MU62892melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C011382T1MELO3C011382T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU43795MU43795transcribed_cluster
MU62892MU62892transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 20..122
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C011382Cucumber (Gy14) v1cgymeB055
MELO3C011382Cucurbita maxima (Rimu)cmameB157
MELO3C011382Cucurbita maxima (Rimu)cmameB724
MELO3C011382Cucurbita moschata (Rifu)cmomeB147
MELO3C011382Cucurbita moschata (Rifu)cmomeB715
MELO3C011382Wild cucumber (PI 183967)cpimeB477
MELO3C011382Cucumber (Chinese Long) v2cumeB479
MELO3C011382Watermelon (Charleston Gray)mewcgB296
MELO3C011382Watermelon (97103) v1mewmB301
MELO3C011382Cucurbita pepo (Zucchini)cpemeB088
MELO3C011382Cucurbita pepo (Zucchini)cpemeB755
MELO3C011382Bottle gourd (USVL1VR-Ls)lsimeB470
MELO3C011382Cucumber (Gy14) v2cgybmeB419
MELO3C011382Silver-seed gourdcarmeB0142
MELO3C011382Silver-seed gourdcarmeB0649
MELO3C011382Wax gourdmewgoB352
MELO3C011382Cucumber (Chinese Long) v3cucmeB488
MELO3C011382Watermelon (97103) v2mewmbB303