MU43795 (transcribed_cluster) Melon (DHL92) v3.5.1

Overview
NameMU43795
Typetranscribed_cluster
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase subunit beta
Locationchr3 : 24172576 .. 24187988 (-)
Sequence length1555
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

AGAAGGTCATGGACAAGAATCCATCAAAACAGATTAGTTCAGCTGTTGAAAATATGTTGAAAACTGGAAGACTCGTTACACAAACTGGCCTAGATCTGCAGCAGAGAGCAGGCTTTACAGTTCAGGCAGAGCGACTTAATTTCTTGCGCTTTGTGTCTCATTTTCGTGCTGTTCATCGTGGAGCTTCGTTTGCTGGACTTCGCACTACAACTGTGCGGAAATTGCTACCTGAGTCTTGGGGTTTTCTTTGTCCAGTACACACTCCTGATGGTGAACCATGCGGCTTGCTGAATCATTTAACCAGCACCTGCAGAATTACGTCATACTTCAATTCTCAAGGAAAAGTTCGAGACTTTTACAAAATAAGGACGTCTATTCTAAGTGTTCTAATTGCAGTTGGAATGATACCGTCACTACCGAAGCTTGTTCAAATGGGTCCTCCTGATGTTCTTAATGTGCTTTTAGATGGTCGACTCGTTGGTTATATATCATCCAATGAAGTAGAGAAAGTTGTTGCTCATTTACGTCGATTAAAAGTTTTATCTCCCCACGTGATTCCCGACGATCTGGAAGTTGGATATGTACCTTTGAGTATAAGTGGAGCATATCCTGGTTTATACCTTTTCACATCTCCTTCTAGATTTGTCCGACCAGTTAAAAATCTTTCAATCTCCCCTGAGGATAATCACAATATTGAACTCATCGGCCCATTTGAACAGGTGTTTATGGAAATACGATGCCCTGATGGGGGTGATGGTGGGAGGAAAGATGAGTTTCCTGCAACACATGAAGAAATCCATCCAACTGGGATGCTCAGTGTGGTTGCTAATCTTACCCCTTGGTCCGATCACAATCAGAGCCCACGTAATATATGGCAAAACAAACAATGGCATTCTCTCTGCAAGCTATTCGGTACCGTGCAGATCAAAAGCTATACCATCTTCAGACTCCTCAGACCCCTATTGTTCGTACAAGCACATATACGAAATACAACATAGATGAATATCCAACTGGCACAAACGCAATAGTGGCAGTGTTGGCATATACTGGTTATGACATGGAGGATGCGATGATTCTGAACAAGTCCTCTGTGGAGCGTGGAATGTTCCATGGACAAATATATCAGACAGAAACTATTGACTTGTCTGATCAGGGCAATAGGTCAAGTCGAAGTCAGAAGATGTTTAGGAGGAGTAATATTGATACATCTGTGCGATCTATCATAGATGCAGATGGGCTGCCTTATGTTGGTCAGATGATAnCACCAGATGAGCCTTATTGTAGCATTTATGATGAGGTGGCTGGCACAACCAGAACCATGAAACTTAAAGGTTCAGAAGCTGTTATTGTTGATTATGTGTCTGTTGATGTGAAGAATAAGAATAACCCCCAAAAGGTGAATATACGCTTCCGGCGCCCTCGGAATCCAATGATTGGAGATAAATTTAGTAGTAGACATGGACAGAAAGGTGTTTGCTCCCAGCTATGGCCAGATATCGATATGCCATTTTGTGGAGCTACAGGAATGCGCCCGGATTTGATTATCAATCCCCAT
Homology
[Close]
BLAST of MU43795 vs. Swiss-Prot
Match: NRPA2_ARATH (DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana GN=NRPA2 PE=2 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 2.7e-123
Identity = 214/292 (73.29%), Postives = 252/292 (86.30%), Query Frame = 3 

Query: 3   KVMDKNPSKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG 62
           K+++KNP + I +++E +LKTG L TQ+GLDLQQRAG+TVQAERLNFLRF+S FRAVHRG
Sbjct: 418 KLINKNPPRSIGTSIETLLKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRG 477

Query: 63  ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYK 122
           ASFAGLRTTTVRKLLPESWGFLCPVHTPDG PCGLLNH+T T RITS F+S+G +RDF K
Sbjct: 478 ASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLK 537

Query: 123 IRTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLLDGRLVGYISSNEVEKVVAHLRRLKVL 182
           IR S++ VL   GM+PSLPKLV+ GPP V++VLLDG++VG +SSN V KVV+++RRLKV 
Sbjct: 538 IRKSVVDVLTGAGMVPSLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVE 597

Query: 183 SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV 242
           +P VIP+DLEVGYVP S+ G+YPGLYL + P+RF+RPVKN+SI P D  NIELIGPFEQV
Sbjct: 598 APSVIPEDLEVGYVPTSMGGSYPGLYLASCPARFIRPVKNISI-PSD--NIELIGPFEQV 657

Query: 243 FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNIWQ 302
           FMEI CPDGG+GGR +   ATHEEIHPTGM+SVVANLTPWSDHNQSPRN++Q
Sbjct: 658 FMEISCPDGGNGGRNNSSLATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQ 706

Query: 303  362
           
Sbjct: 718  706

Query: 363  422
           
Sbjct: 778  706

Query: 423  482
           
Sbjct: 838  706

Query: 483  542
           
Sbjct: 898  706

Query: 543  602
           
Sbjct: 958  706

Query: 603  662
           
Sbjct: 1018  706

Query: 663  722
           
Sbjct: 1078  706

Query: 723  782
           
Sbjct: 1138  706

Query: 783  842
           
Sbjct: 1198  706

Query: 843  879
           
Sbjct: 1258  706


HSP 2 Score: 350.5 bits (898), Expect = 3.1e-95
Identity = 171/228 (75.00%), Postives = 191/228 (83.77%), Query Frame = 2 

Query: 872  MAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTG 931
            MAKQTMA+S QA+++RADQK+YHLQTPQ+P+VRT TYT Y+IDE PTGTNAIVAVLA+TG
Sbjct: 709  MAKQTMAYSTQALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTG 768

Query: 932  YDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDA 991
            +DMEDAMILNKSSVERGM HGQIYQTE IDLSDQ +R     K FRRS  + +    IDA
Sbjct: 769  FDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSFRRST-NKAEHFRIDA 828

Query: 992  DGLPYVGQMIXPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRF 1051
            DGLP VGQ + PDEPYCSIYDEV   TR MK KG++ VIVD+VSVD+K+K +PQ+ NIRF
Sbjct: 829  DGLPSVGQKLYPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKKHPQRANIRF 888

Query: 1052 RRPRNPMIGDKFSSRHGQKGVCSQLWPDIDMPFCGATGMRPDLIINPH 1111
            R  RNP+IGDKFSSRHGQKGVCSQLWPDIDMPF G TGMRPDLIINPH
Sbjct: 889  RHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPH 935

Query: 1112  1171
            
Sbjct: 949   935

Query: 1172  1231
            
Sbjct: 1009  935

Query: 1232  1291
            
Sbjct: 1069  935

Query: 1292  1351
            
Sbjct: 1129  935

Query: 1352  1411
            
Sbjct: 1189  935

Query: 1412  1471
            
Sbjct: 1249  935

Query: 1472  1531
            
Sbjct: 1309  935

Query: 1532  1556
            
Sbjct: 1369  935

[Close]
BLAST of MU43795 vs. Swiss-Prot
Match: RPA2_SCHPO (Probable DNA-directed RNA polymerase I subunit RPA2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpa2 PE=3 SV=2)

HSP 1 Score: 256.5 bits (654), Expect = 6.1e-67
Identity = 142/305 (46.56%), Postives = 187/305 (61.31%), Query Frame = 3 

Query: 24  SKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLR 83
           +  I + ++  L TG LV+ TGLDLQQ  G+TV AE+LNF RF+SHFR VHRGA FA L+
Sbjct: 430 NNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELK 489

Query: 84  TTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYKIRTSILS 143
           TTTVRKLLPE+WGF+CPVHTPDG PCGLLNHL   C I ++ +                 
Sbjct: 490 TTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCEIVTHPSD---------------- 549

Query: 144 VLIAVGMIPSLPKLVQMGPPDVLN-------VLLDGRLVGYISSNEVEKVVAHLRRLKV- 203
               V  IPSL   + + PP V+        V LDG++VG+ +    + V   LR +K+ 
Sbjct: 550 ----VSQIPSLLLSLGVDPPSVVGHESGWGCVQLDGKIVGWCTYKLAKHVADVLRLMKIE 609

Query: 204 ----------LSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNH 263
                       P  +P DLE+GYVP S +G YPGLYLF++P+R VRPVK++S       
Sbjct: 610 YAVKLRNGTATEPAKVPLDLEIGYVPPSHNGQYPGLYLFSNPARMVRPVKHISTG----- 669

Query: 264 NIELIGPFEQVFMEIRCPDGGDGGRKDEFP--ATHEEIHPTGMLSVVANLTPWSDHNQSP 323
            ++++GPFEQV+M+I C        K+  P  +TH E  PT +LS+VAN+TP+SD NQSP
Sbjct: 670 ELDMLGPFEQVYMDIAC------FPKEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSP 703

Query: 324 RNIWQ 383
           RN++Q
Sbjct: 730 RNMYQ 703

Query: 384  443
           
Sbjct: 790  703

Query: 444  503
           
Sbjct: 850  703

Query: 504  563
           
Sbjct: 910  703

Query: 564  623
           
Sbjct: 970  703

Query: 624  683
           
Sbjct: 1030  703

Query: 684  743
           
Sbjct: 1090  703

Query: 744  803
           
Sbjct: 1150  703

Query: 804  863
           
Sbjct: 1210  703

Query: 864  879
           
Sbjct: 1270  703


HSP 2 Score: 214.2 bits (544), Expect = 3.5e-54
Identity = 114/234 (48.72%), Postives = 147/234 (62.82%), Query Frame = 2 

Query: 872  MAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTG 931
            M KQTM     A+RYR D KLY LQT QTP+VR   +  Y +D YP GTNA+VAV++YTG
Sbjct: 706  MGKQTMGTPGTALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTG 765

Query: 932  YDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVR---SI 991
            YDMEDAMILNKS+ ERG  +G +Y+ E+ DLS +  R       F  +   T  R     
Sbjct: 766  YDMEDAMILNKSAHERGFGYGTVYKGESFDLSQKRRRGEPVVHHFGFAPGSTPRREWLQK 825

Query: 992  IDADGLPYVGQMIXPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSV---DVKNKNNPQ 1051
            +DADGLP++G  +   +P  + YDE  G        G+E   VD V +   DV   +  Q
Sbjct: 826  LDADGLPFIGIKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDV-GDSECQ 885

Query: 1052 KVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDIDMPFCGATGMRPDLIINPH 1111
            +++++ R  R+P+IGDKFSSRHGQKG+CSQ WP +DMPF   +GM+PD+IINPH
Sbjct: 886  QIHVKLRITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFT-ESGMQPDIIINPH 937

Query: 1112  1171
            
Sbjct: 946   937

Query: 1172  1231
            
Sbjct: 1006  937

Query: 1232  1291
            
Sbjct: 1066  937

Query: 1292  1351
            
Sbjct: 1126  937

Query: 1352  1411
            
Sbjct: 1186  937

Query: 1412  1471
            
Sbjct: 1246  937

Query: 1472  1531
            
Sbjct: 1306  937

Query: 1532  1556
            
Sbjct: 1366  937

[Close]
BLAST of MU43795 vs. Swiss-Prot
Match: RPA2_NEUCR (DNA-directed RNA polymerase I subunit RPA2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=acr-2 PE=1 SV=2)

HSP 1 Score: 253.8 bits (647), Expect = 4.0e-66
Identity = 137/291 (47.08%), Postives = 184/291 (63.23%), Query Frame = 3 

Query: 15  KNPSKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFA 74
           +  ++ I  ++E  L TG LV+ +GLDLQQ +GFTV AE+LNFLRF+SHFR VHRG+ FA
Sbjct: 457 RRANENIGQSLEYFLSTGNLVSPSGLDLQQVSGFTVVAEKLNFLRFISHFRMVHRGSFFA 516

Query: 75  GLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYKIRTS 134
            L+TTTVRKLLPESWGFLCPVHTPDG PCGLLNHL   C+I +             +  S
Sbjct: 517 QLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIMT-----------ESVDAS 576

Query: 135 ILSVL-IAVGMIPSLPKLVQMGPPDVLNVLLDGRLVGYISSNEVEKVVAHLRRLKVLSPH 194
            +S L   +G++     +      + + V+LDGR+VG+ +  E + +   LR  KV   +
Sbjct: 577 TISRLAFELGVV----NISSAATSESVVVMLDGRIVGWCTPEECKSIAETLRYWKVNGEN 636

Query: 195 VIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFME 254
            +P  LE+GYVP S  G+YPGLY+ + P+R VRPVK L +  ED      +GP EQ +M 
Sbjct: 637 GVPLQLEIGYVPPSNGGSYPGLYMSSQPARMVRPVKYLPLQKED-----FVGPQEQPYMS 696

Query: 255 IRCPDGGDGGRKDEFP--ATHEEIHPTGMLSVVANLTPWSDHNQSPRNIWQ 314
           I C +      ++  P  +TH E  PT +LS++AN+TP+SD NQSPRN++Q
Sbjct: 697 IACTE------QEVIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQ 721

Query: 315  374
           
Sbjct: 757  721

Query: 375  434
           
Sbjct: 817  721

Query: 435  494
           
Sbjct: 877  721

Query: 495  554
           
Sbjct: 937  721

Query: 555  614
           
Sbjct: 997  721

Query: 615  674
           
Sbjct: 1057  721

Query: 675  734
           
Sbjct: 1117  721

Query: 735  794
           
Sbjct: 1177  721

Query: 795  854
           
Sbjct: 1237  721

Query: 855  879
           
Sbjct: 1297  721


HSP 2 Score: 206.5 bits (524), Expect = 7.3e-52
Identity = 118/245 (48.16%), Postives = 149/245 (60.82%), Query Frame = 2 

Query: 872  MAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTG 931
            M KQTM     A+ +R D K+Y LQT QTP+VR   +  Y  D +P G NA+VAV++YTG
Sbjct: 724  MGKQTMGTPATALAHRTDNKMYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTG 783

Query: 932  YDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQG-NRSSRS-QKMF---RRSNIDTSVR 991
            YDM+DAMILNKS+ ERG  HG IY+T+ + L D    RS++S  KMF     S I  S R
Sbjct: 784  YDMDDAMILNKSAHERGFGHGSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNSTIRESTR 843

Query: 992  SIIDADGLPYVGQMIXPDEPYCSIYDEVA----------GTTRTMKLKGSEAVIVDYVSV 1051
             ++D DGLP VG+++   +  C+ +   A          G T   + K SE   V+ V V
Sbjct: 844  DMLDNDGLPRVGRLLREGDVICAWHTVSADYNGQLVNRDGVTHYERYKDSEDAFVEEVRV 903

Query: 1052 -DVKNKNNP-QKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDIDMPFCGATGMRPDL 1111
                N   P Q V+I+ R PR+P+IGDKFSSRHGQKGV SQ WP  DMPF   TG++PD+
Sbjct: 904  IGADNGTEPLQTVSIKLRIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPF-SETGIQPDV 963

Query: 1112 IINPH 1171
            IINPH
Sbjct: 964  IINPH 967

Query: 1172  1231
            
Sbjct: 1024  967

Query: 1232  1291
            
Sbjct: 1084  967

Query: 1292  1351
            
Sbjct: 1144  967

Query: 1352  1411
            
Sbjct: 1204  967

Query: 1412  1471
            
Sbjct: 1264  967

Query: 1472  1531
            
Sbjct: 1324  967

Query: 1532  1556
            
Sbjct: 1384  967

[Close]
BLAST of MU43795 vs. Swiss-Prot
Match: RPA2_YEAST (DNA-directed RNA polymerase I subunit RPA135 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPA135 PE=1 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.7e-65
Identity = 138/286 (48.25%), Postives = 182/286 (63.64%), Query Frame = 3 

Query: 24  SKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLR 83
           ++ I S ++  L TG LV+Q+GLDLQQ +G+TV AE++NF RF+SHFR VHRG+ FA L+
Sbjct: 454 NENIGSKMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLK 513

Query: 84  TTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYKIRTSILS 143
           TTTVRKLLPESWGFLCPVHTPDG PCGLLNH    CRI++    Q  V       + I S
Sbjct: 514 TTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRIST---QQSDV-------SRIPS 573

Query: 144 VLIAVGMIPSLPKLVQMGPPDVLNVLLDGRLVGYISSNEVEKVVAHLRRLKVLSPHV-IP 203
           +L ++G+ P+         P +  V +DG+++G++S  + + +   LR  KV      +P
Sbjct: 574 ILYSLGVAPASHTFA--AGPSLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGLP 633

Query: 204 DDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRC 263
            DLE+GYVP S  G YPGLYLF   SR +RPV+ L +  ED     ++GPFEQV+M I  
Sbjct: 634 IDLEIGYVPPSTRGQYPGLYLFGGHSRMLRPVRYLPLDKED-----IVGPFEQVYMNIAV 693

Query: 264 PDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNIWQ 323
                         TH E  PT +LS++ANLTP+SD NQSPRN++Q
Sbjct: 694 TP----QEIQNNVHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQ 718

Query: 324  383
           
Sbjct: 754  718

Query: 384  443
           
Sbjct: 814  718

Query: 444  503
           
Sbjct: 874  718

Query: 504  563
           
Sbjct: 934  718

Query: 564  623
           
Sbjct: 994  718

Query: 624  683
           
Sbjct: 1054  718

Query: 684  743
           
Sbjct: 1114  718

Query: 744  803
           
Sbjct: 1174  718

Query: 804  863
           
Sbjct: 1234  718

Query: 864  879
           
Sbjct: 1294  718


HSP 2 Score: 212.2 bits (539), Expect = 1.3e-53
Identity = 110/233 (47.21%), Postives = 148/233 (63.52%), Query Frame = 2 

Query: 872  MAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTG 931
            M KQTM     A+ +R+D KLY LQT QTPIV+ + Y  Y +D +P G NA+VAV++YTG
Sbjct: 721  MGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTG 780

Query: 932  YDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSI--I 991
            YDM+DAMI+NKS+ ERG  +G +Y+TE +DL+   NR     + F   N +     +  +
Sbjct: 781  YDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHFGFGNDEWPKEWLEKL 840

Query: 992  DADGLPYVGQMIXPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSV--DVKNK-NNPQK 1051
            D DGLPY+G  +   +P C+ +D+    T+      SE   ++ V++  D  NK    Q 
Sbjct: 841  DEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQT 900

Query: 1052 VNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDIDMPFCGATGMRPDLIINPH 1111
            V+I++R  R P IGDKFSSRHGQKGVCS+ WP IDMPF   TG++PD+IINPH
Sbjct: 901  VSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPF-SETGIQPDIIINPH 952

Query: 1112  1171
            
Sbjct: 961   952

Query: 1172  1231
            
Sbjct: 1021  952

Query: 1232  1291
            
Sbjct: 1081  952

Query: 1292  1351
            
Sbjct: 1141  952

Query: 1352  1411
            
Sbjct: 1201  952

Query: 1412  1471
            
Sbjct: 1261  952

Query: 1472  1531
            
Sbjct: 1321  952

Query: 1532  1556
            
Sbjct: 1381  952

[Close]
BLAST of MU43795 vs. Swiss-Prot
Match: RPA2_ASHGO (DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPA2 PE=3 SV=2)

HSP 1 Score: 248.1 bits (632), Expect = 2.2e-64
Identity = 139/286 (48.60%), Postives = 183/286 (63.99%), Query Frame = 3 

Query: 24  SKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLR 83
           ++ I S ++  L TG LV+Q+GLDLQQ +G+TV AE++NF RF+SHFR VHRG+ FA L+
Sbjct: 447 NENIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLK 506

Query: 84  TTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYKIRTSILS 143
           TTTVRKLLPESWGFLCPVHTPDG PCGLLNH    C+I++   +Q  V       + I +
Sbjct: 507 TTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCKIST---TQSDV-------SKIPT 566

Query: 144 VLIAVGMIPSLPKLVQMGPPDVLNVLLDGRLVGYISSNEVEKVVAHLRRLKVL-SPHVIP 203
           +L ++G+ P+    V    P +  V LDG++VG+ S  +   V   LR  KV      +P
Sbjct: 567 LLYSLGVSPAAH--VTAAGPSLCCVQLDGKIVGWCSHEQGRIVADTLRYWKVEGKTDGLP 626

Query: 204 DDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRC 263
            DLE+GYVP S  G YPGLYLF   SR +RPV+ L +  +D     ++GPFEQV+M+I  
Sbjct: 627 LDLEIGYVPASKRGQYPGLYLFGGHSRMMRPVRYLPLDKQD-----IVGPFEQVYMDIAV 686

Query: 264 PDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNIWQ 323
                         TH E  PT +LS++ANLTP+SD NQSPRN++Q
Sbjct: 687 TP----EEIQNNVHTHVEFSPTNILSILANLTPFSDFNQSPRNMYQ 711

Query: 324  383
           
Sbjct: 747  711

Query: 384  443
           
Sbjct: 807  711

Query: 444  503
           
Sbjct: 867  711

Query: 504  563
           
Sbjct: 927  711

Query: 564  623
           
Sbjct: 987  711

Query: 624  683
           
Sbjct: 1047  711

Query: 684  743
           
Sbjct: 1107  711

Query: 744  803
           
Sbjct: 1167  711

Query: 804  863
           
Sbjct: 1227  711

Query: 864  879
           
Sbjct: 1287  711


HSP 2 Score: 205.7 bits (522), Expect = 1.2e-51
Identity = 107/233 (45.92%), Postives = 145/233 (62.23%), Query Frame = 2 

Query: 872  MAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTG 931
            M KQTM     A+ +R+D KLY LQ+ QTPIV+ + Y  Y +D +P GTNA+VAV++YTG
Sbjct: 714  MGKQTMGTPGVALCHRSDNKLYRLQSGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTG 773

Query: 932  YDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSI--I 991
            YDM+DAMI+NKS+ ERG  +G +Y+TE IDLS    R     + F     +     +  +
Sbjct: 774  YDMDDAMIINKSADERGFSYGTVYKTEKIDLSLSRGRGDPVTQHFGFGTDEWPKEWLEKL 833

Query: 992  DADGLPYVGQMIXPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSV--DVKNK-NNPQK 1051
            D DGLP +G  +   +P C+ +D+    T+      SE   ++ V++  D  NK    Q 
Sbjct: 834  DEDGLPIIGSYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVTLIGDESNKFQELQY 893

Query: 1052 VNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDIDMPFCGATGMRPDLIINPH 1111
            + I++R  R P IGDKFSSRHGQKGVCS+ WP +DMPF   TG++PD+IINPH
Sbjct: 894  ITIKYRIRRVPQIGDKFSSRHGQKGVCSRKWPTVDMPF-SETGIQPDVIINPH 945

Query: 1112  1171
            
Sbjct: 954   945

Query: 1172  1231
            
Sbjct: 1014  945

Query: 1232  1291
            
Sbjct: 1074  945

Query: 1292  1351
            
Sbjct: 1134  945

Query: 1352  1411
            
Sbjct: 1194  945

Query: 1412  1471
            
Sbjct: 1254  945

Query: 1472  1531
            
Sbjct: 1314  945

Query: 1532  1556
            
Sbjct: 1374  945

[Close]
BLAST of MU43795 vs. TrEMBL
Match: A0A0A0KIZ8_CUCSA (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus GN=Csa_6G400300 PE=3 SV=1)

HSP 1 Score: 580.9 bits (1496), Expect = 1.6e-162
Identity = 284/292 (97.26%), Postives = 290/292 (99.32%), Query Frame = 3 

Query: 3   KVMDKNPSKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG 62
           KVMDKNPSKQ+SSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG
Sbjct: 492 KVMDKNPSKQVSSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG 551

Query: 63  ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYK 122
           ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITS+FNSQGKVRDFYK
Sbjct: 552 ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYK 611

Query: 123 IRTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLLDGRLVGYISSNEVEKVVAHLRRLKVL 182
           IRTSILSVLIAVGMIPSLPKLVQMG PD LNVLLDGR+VGYISSNEVEK+VAHLRRLKVL
Sbjct: 612 IRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVL 671

Query: 183 SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV 242
           SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV
Sbjct: 672 SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV 731

Query: 243 FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNIWQ 302
           FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRN++Q
Sbjct: 732 FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQ 783

Query: 303  362
           
Sbjct: 792  783

Query: 363  422
           
Sbjct: 852  783

Query: 423  482
           
Sbjct: 912  783

Query: 483  542
           
Sbjct: 972  783

Query: 543  602
           
Sbjct: 1032  783

Query: 603  662
           
Sbjct: 1092  783

Query: 663  722
           
Sbjct: 1152  783

Query: 723  782
           
Sbjct: 1212  783

Query: 783  842
           
Sbjct: 1272  783

Query: 843  879
           
Sbjct: 1332  783

[Close]
BLAST of MU43795 vs. TrEMBL
Match: A0A0A0KIZ8_CUCSA (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus GN=Csa_6G400300 PE=3 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 4.8e-127
Identity = 226/228 (99.12%), Postives = 227/228 (99.56%), Query Frame = 2 

Query: 872  MAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTG 931
            MAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTG
Sbjct: 786  MAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTG 845

Query: 932  YDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDA 991
            YDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDA
Sbjct: 846  YDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDA 905

Query: 992  DGLPYVGQMIXPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRF 1051
            DGLPYVGQMI PDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRF
Sbjct: 906  DGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRF 965

Query: 1052 RRPRNPMIGDKFSSRHGQKGVCSQLWPDIDMPFCGATGMRPDLIINPH 1111
            RRPRNPMIGDKFSSRHGQKGVCSQLWPD+DMPFCGATGMRPDLIINPH
Sbjct: 966  RRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMRPDLIINPH 1013

Query: 1112  1171
            
Sbjct: 1026  1013

Query: 1172  1231
            
Sbjct: 1086  1013

Query: 1232  1291
            
Sbjct: 1146  1013

Query: 1292  1351
            
Sbjct: 1206  1013

Query: 1352  1411
            
Sbjct: 1266  1013

Query: 1412  1471
            
Sbjct: 1326  1013

Query: 1472  1531
            
Sbjct: 1386  1013

Query: 1532  1556
            
Sbjct: 1446  1013


HSP 2 Score: 501.1 bits (1289), Expect = 1.6e-138
Identity = 240/292 (82.19%), Postives = 269/292 (92.12%), Query Frame = 3 

Query: 3   KVMDKNPSKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG 62
           KVMDKNPS+QIS AVENMLKTGRLVTQ+GLDLQQRAG TVQAERLNFLRF+SHFRAVHRG
Sbjct: 374 KVMDKNPSRQISLAVENMLKTGRLVTQSGLDLQQRAGMTVQAERLNFLRFLSHFRAVHRG 433

Query: 63  ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYK 122
           ASFAGLRTT+VRKLLPE+WGFLCPVHTPDGEPCGLLNH+ STCRITSYF+S+G  RDF+K
Sbjct: 434 ASFAGLRTTSVRKLLPEAWGFLCPVHTPDGEPCGLLNHMASTCRITSYFDSRGNTRDFFK 493

Query: 123 IRTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLLDGRLVGYISSNEVEKVVAHLRRLKVL 182
           IR SILSVLI +GM P+LPKLVQ GPP+VL+V+LDGR+VG I S+EVE  V HLRRLKV 
Sbjct: 494 IRMSILSVLIGIGMTPALPKLVQAGPPEVLSVILDGRVVGSIPSSEVETAVNHLRRLKVS 553

Query: 183 SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV 242
           +  VIPDDLEVGY+PLS+ GAYPGLYLFTSPSRFVRPV+N+SI  E+ H+IELIGPFEQV
Sbjct: 554 AISVIPDDLEVGYIPLSMGGAYPGLYLFTSPSRFVRPVRNISIPSEEGHDIELIGPFEQV 613

Query: 243 FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNIWQ 302
           +MEIRCPDG DGGR++ FPATHEEIHPTGMLSVVA+LTPWSDHNQSPRN++Q
Sbjct: 614 YMEIRCPDGSDGGRRNIFPATHEEIHPTGMLSVVASLTPWSDHNQSPRNMYQ 665

Query: 303  362
           
Sbjct: 674  665

Query: 363  422
           
Sbjct: 734  665

Query: 423  482
           
Sbjct: 794  665

Query: 483  542
           
Sbjct: 854  665

Query: 543  602
           
Sbjct: 914  665

Query: 603  662
           
Sbjct: 974  665

Query: 663  722
           
Sbjct: 1034  665

Query: 723  782
           
Sbjct: 1094  665

Query: 783  842
           
Sbjct: 1154  665

Query: 843  879
           
Sbjct: 1214  665

[Close]
BLAST of MU43795 vs. TrEMBL
Match: F6HVC4_VITVI (DNA-directed RNA polymerase subunit beta OS=Vitis vinifera GN=VIT_13s0084g00600 PE=3 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 1.8e-105
Identity = 186/228 (81.58%), Postives = 205/228 (89.91%), Query Frame = 2 

Query: 872  MAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTG 931
            M KQTMAFS QAI  RADQKLYHLQTPQTPIVRTS Y KY++DE+PTGTNAIVAVLAY+G
Sbjct: 668  MGKQTMAFSSQAINCRADQKLYHLQTPQTPIVRTSAYVKYSMDEFPTGTNAIVAVLAYSG 727

Query: 932  YDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDA 991
            YDMEDAMILNKSSV+RG+ HGQIYQTETIDLSD+ N+S R Q+MFRRSN+D S  S+ID+
Sbjct: 728  YDMEDAMILNKSSVDRGLCHGQIYQTETIDLSDENNKSDRGQRMFRRSNVDKSANSLIDS 787

Query: 992  DGLPYVGQMIXPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRF 1051
            DGLPYVGQMI P+EPYCSIY+EV  +TR  KLKGSE VIVDYV++D KNK +PQKVNIRF
Sbjct: 788  DGLPYVGQMINPNEPYCSIYNEVTSSTRATKLKGSEPVIVDYVALDAKNKKHPQKVNIRF 847

Query: 1052 RRPRNPMIGDKFSSRHGQKGVCSQLWPDIDMPFCGATGMRPDLIINPH 1111
            RRPRNP+IGDKFSSRHGQKGVCSQLWPDIDMPF G TGMRPDLIINPH
Sbjct: 848  RRPRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 895

Query: 1112  1171
            
Sbjct: 908   895

Query: 1172  1231
            
Sbjct: 968   895

Query: 1232  1291
            
Sbjct: 1028  895

Query: 1292  1351
            
Sbjct: 1088  895

Query: 1352  1411
            
Sbjct: 1148  895

Query: 1412  1471
            
Sbjct: 1208  895

Query: 1472  1531
            
Sbjct: 1268  895

Query: 1532  1556
            
Sbjct: 1328  895


HSP 2 Score: 500.0 bits (1286), Expect = 3.5e-138
Identity = 239/292 (81.85%), Postives = 267/292 (91.44%), Query Frame = 3 

Query: 3   KVMDKNPSKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG 62
           KVMDKNP +QI SA+ENMLKTGRLVTQ+GLDLQQRAG+TVQAERLNFLRF+SHFRAVHRG
Sbjct: 412 KVMDKNPGRQIGSAIENMLKTGRLVTQSGLDLQQRAGYTVQAERLNFLRFLSHFRAVHRG 471

Query: 63  ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYK 122
           ASFAGLRTT+VRKLLPESWGFLCPVHTPDGEPCGLLNH+T TCRITS+F+S+G  RDF K
Sbjct: 472 ASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTCRITSFFDSKGNFRDFVK 531

Query: 123 IRTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLLDGRLVGYISSNEVEKVVAHLRRLKVL 182
           IRTSIL+VLI +GM PSLPK+VQ GPPDVL+VLLDGR+VG I S EVEK V++LRRLK+ 
Sbjct: 532 IRTSILNVLIGIGMTPSLPKIVQAGPPDVLSVLLDGRVVGSIPSAEVEKAVSYLRRLKLS 591

Query: 183 SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV 242
           +   IPDDLEVGYVPLS  GAYPGLYLFT+PSRF RPV+N+S   + + NIELIGPFEQV
Sbjct: 592 TTSGIPDDLEVGYVPLSFGGAYPGLYLFTNPSRFARPVRNISAPVDGSQNIELIGPFEQV 651

Query: 243 FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNIWQ 302
           FMEIRCPDGGDGGR++EFPATHEEIHPTGMLSVVANLTPWSDHNQSPRN++Q
Sbjct: 652 FMEIRCPDGGDGGRRNEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQ 703

Query: 303  362
           
Sbjct: 712  703

Query: 363  422
           
Sbjct: 772  703

Query: 423  482
           
Sbjct: 832  703

Query: 483  542
           
Sbjct: 892  703

Query: 543  602
           
Sbjct: 952  703

Query: 603  662
           
Sbjct: 1012  703

Query: 663  722
           
Sbjct: 1072  703

Query: 723  782
           
Sbjct: 1132  703

Query: 783  842
           
Sbjct: 1192  703

Query: 843  879
           
Sbjct: 1252  703

[Close]
BLAST of MU43795 vs. TrEMBL
Match: A0A059BI44_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03213 PE=3 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 7.7e-101
Identity = 181/228 (79.39%), Postives = 197/228 (86.40%), Query Frame = 2 

Query: 872  MAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTG 931
            MAKQTMAFS QAI +RADQKLYHLQTPQTPIVRT  YTKY IDE+PTGTNAIVAVLAY+G
Sbjct: 706  MAKQTMAFSSQAIHFRADQKLYHLQTPQTPIVRTGAYTKYCIDEFPTGTNAIVAVLAYSG 765

Query: 932  YDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDA 991
            YDMEDAMILNKSSVERGMFHGQIYQTETIDLS+Q ++S R Q+MFRRSN D S    ID+
Sbjct: 766  YDMEDAMILNKSSVERGMFHGQIYQTETIDLSEQSSKSDREQRMFRRSNTDKSAHPWIDS 825

Query: 992  DGLPYVGQMIXPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRF 1051
            DGLPYVGQMI P+EPYCS+Y+EV  TT+    KGSE+ IVDYV+VD K K   QK NIRF
Sbjct: 826  DGLPYVGQMIRPNEPYCSVYNEVTTTTKNHLRKGSESAIVDYVAVDTKTKKGLQKANIRF 885

Query: 1052 RRPRNPMIGDKFSSRHGQKGVCSQLWPDIDMPFCGATGMRPDLIINPH 1111
            R PRNP+IGDKFSSRHGQKGVCSQLWPD+DMPF G TGMRPDLIINPH
Sbjct: 886  RHPRNPVIGDKFSSRHGQKGVCSQLWPDVDMPFSGITGMRPDLIINPH 933

Query: 1112  1171
            
Sbjct: 946   933

Query: 1172  1231
            
Sbjct: 1006  933

Query: 1232  1291
            
Sbjct: 1066  933

Query: 1292  1351
            
Sbjct: 1126  933

Query: 1352  1411
            
Sbjct: 1186  933

Query: 1412  1471
            
Sbjct: 1246  933

Query: 1472  1531
            
Sbjct: 1306  933

Query: 1532  1556
            
Sbjct: 1366  933


HSP 2 Score: 500.0 bits (1286), Expect = 3.5e-138
Identity = 239/292 (81.85%), Postives = 267/292 (91.44%), Query Frame = 3 

Query: 3   KVMDKNPSKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG 62
           KVMDKNP +QI SA+ENMLKTGRLVTQ+GLDLQQRAG+TVQAERLNFLRF+SHFRAVHRG
Sbjct: 412 KVMDKNPGRQIGSAIENMLKTGRLVTQSGLDLQQRAGYTVQAERLNFLRFLSHFRAVHRG 471

Query: 63  ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYK 122
           ASFAGLRTT+VRKLLPESWGFLCPVHTPDGEPCGLLNH+T TCRITS+F+S+G  RDF K
Sbjct: 472 ASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTCRITSFFDSKGNFRDFVK 531

Query: 123 IRTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLLDGRLVGYISSNEVEKVVAHLRRLKVL 182
           IRTSIL+VLI +GM PSLPK+VQ GPPDVL+VLLDGR+VG I S EVEK V++LRRLK+ 
Sbjct: 532 IRTSILNVLIGIGMTPSLPKIVQAGPPDVLSVLLDGRVVGSIPSAEVEKAVSYLRRLKLS 591

Query: 183 SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV 242
           +   IPDDLEVGYVPLS  GAYPGLYLFT+PSRF RPV+N+S   + + NIELIGPFEQV
Sbjct: 592 TTSGIPDDLEVGYVPLSFGGAYPGLYLFTNPSRFARPVRNISAPVDGSQNIELIGPFEQV 651

Query: 243 FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNIWQ 302
           FMEIRCPDGGDGGR++EFPATHEEIHPTGMLSVVANLTPWSDHNQSPRN++Q
Sbjct: 652 FMEIRCPDGGDGGRRNEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQ 703

Query: 303  362
           
Sbjct: 712  703

Query: 363  422
           
Sbjct: 772  703

Query: 423  482
           
Sbjct: 832  703

Query: 483  542
           
Sbjct: 892  703

Query: 543  602
           
Sbjct: 952  703

Query: 603  662
           
Sbjct: 1012  703

Query: 663  722
           
Sbjct: 1072  703

Query: 723  782
           
Sbjct: 1132  703

Query: 783  842
           
Sbjct: 1192  703

Query: 843  879
           
Sbjct: 1252  703

[Close]
BLAST of MU43795 vs. TrEMBL
Match: A0A059BJ30_EUCGR (DNA-directed RNA polymerase subunit beta OS=Eucalyptus grandis GN=EUGRSUZ_G03213 PE=3 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 7.7e-101
Identity = 181/228 (79.39%), Postives = 197/228 (86.40%), Query Frame = 2 

Query: 872  MAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTG 931
            MAKQTMAFS QAI +RADQKLYHLQTPQTPIVRT  YTKY IDE+PTGTNAIVAVLAY+G
Sbjct: 706  MAKQTMAFSSQAIHFRADQKLYHLQTPQTPIVRTGAYTKYCIDEFPTGTNAIVAVLAYSG 765

Query: 932  YDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDA 991
            YDMEDAMILNKSSVERGMFHGQIYQTETIDLS+Q ++S R Q+MFRRSN D S    ID+
Sbjct: 766  YDMEDAMILNKSSVERGMFHGQIYQTETIDLSEQSSKSDREQRMFRRSNTDKSAHPWIDS 825

Query: 992  DGLPYVGQMIXPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRF 1051
            DGLPYVGQMI P+EPYCS+Y+EV  TT+    KGSE+ IVDYV+VD K K   QK NIRF
Sbjct: 826  DGLPYVGQMIRPNEPYCSVYNEVTTTTKNHLRKGSESAIVDYVAVDTKTKKGLQKANIRF 885

Query: 1052 RRPRNPMIGDKFSSRHGQKGVCSQLWPDIDMPFCGATGMRPDLIINPH 1111
            R PRNP+IGDKFSSRHGQKGVCSQLWPD+DMPF G TGMRPDLIINPH
Sbjct: 886  RHPRNPVIGDKFSSRHGQKGVCSQLWPDVDMPFSGITGMRPDLIINPH 933

Query: 1112  1171
            
Sbjct: 946   933

Query: 1172  1231
            
Sbjct: 1006  933

Query: 1232  1291
            
Sbjct: 1066  933

Query: 1292  1351
            
Sbjct: 1126  933

Query: 1352  1411
            
Sbjct: 1186  933

Query: 1412  1471
            
Sbjct: 1246  933

Query: 1472  1531
            
Sbjct: 1306  933

Query: 1532  1556
            
Sbjct: 1366  933


HSP 2 Score: 500.0 bits (1286), Expect = 3.5e-138
Identity = 238/292 (81.51%), Postives = 270/292 (92.47%), Query Frame = 3 

Query: 3   KVMDKNPSKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG 62
           KVM+KNPSKQI +++E MLKTGRL TQTGLDLQQRAG+TVQAERLNFLRF+S FRAVHRG
Sbjct: 319 KVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRG 378

Query: 63  ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYK 122
           ASFAGLRTT+VRKLLPESWGFLCPVHTPDGEPCGLLNH+TSTCR+ SY++S+G +RDF K
Sbjct: 379 ASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 438

Query: 123 IRTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLLDGRLVGYISSNEVEKVVAHLRRLKVL 182
           +RTSIL VLI VGMIPSLPKLV+ GPP VL+VLLDGR+VG I S+E+EKVVAHLRRLKV 
Sbjct: 439 MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS 498

Query: 183 SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV 242
           +  VIPDDLEVGYVPLS+ GAYPGLYLFTSP +FVRPV+N+S+  E++ NIELIGPFEQV
Sbjct: 499 AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQV 558

Query: 243 FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNIWQ 302
           FMEIRCPDGGDGGR++ FPATHEEIHPTGMLSVVANLTP+SDHNQSPRN++Q
Sbjct: 559 FMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 610

Query: 303  362
           
Sbjct: 619  610

Query: 363  422
           
Sbjct: 679  610

Query: 423  482
           
Sbjct: 739  610

Query: 483  542
           
Sbjct: 799  610

Query: 543  602
           
Sbjct: 859  610

Query: 603  662
           
Sbjct: 919  610

Query: 663  722
           
Sbjct: 979  610

Query: 723  782
           
Sbjct: 1039  610

Query: 783  842
           
Sbjct: 1099  610

Query: 843  879
           
Sbjct: 1159  610

[Close]
BLAST of MU43795 vs. TAIR10
Match: AT1G29940.1 (AT1G29940.1 nuclear RNA polymerase A2)

HSP 1 Score: 443.7 bits (1140), Expect = 1.5e-124
Identity = 214/292 (73.29%), Postives = 252/292 (86.30%), Query Frame = 3 

Query: 3   KVMDKNPSKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG 62
           K+++KNP + I +++E +LKTG L TQ+GLDLQQRAG+TVQAERLNFLRF+S FRAVHRG
Sbjct: 418 KLINKNPPRSIGTSIETLLKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRG 477

Query: 63  ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYK 122
           ASFAGLRTTTVRKLLPESWGFLCPVHTPDG PCGLLNH+T T RITS F+S+G +RDF K
Sbjct: 478 ASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLK 537

Query: 123 IRTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLLDGRLVGYISSNEVEKVVAHLRRLKVL 182
           IR S++ VL   GM+PSLPKLV+ GPP V++VLLDG++VG +SSN V KVV+++RRLKV 
Sbjct: 538 IRKSVVDVLTGAGMVPSLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVE 597

Query: 183 SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV 242
           +P VIP+DLEVGYVP S+ G+YPGLYL + P+RF+RPVKN+SI P D  NIELIGPFEQV
Sbjct: 598 APSVIPEDLEVGYVPTSMGGSYPGLYLASCPARFIRPVKNISI-PSD--NIELIGPFEQV 657

Query: 243 FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNIWQ 302
           FMEI CPDGG+GGR +   ATHEEIHPTGM+SVVANLTPWSDHNQSPRN++Q
Sbjct: 658 FMEISCPDGGNGGRNNSSLATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQ 706

Query: 303  362
           
Sbjct: 718  706

Query: 363  422
           
Sbjct: 778  706

Query: 423  482
           
Sbjct: 838  706

Query: 483  542
           
Sbjct: 898  706

Query: 543  602
           
Sbjct: 958  706

Query: 603  662
           
Sbjct: 1018  706

Query: 663  722
           
Sbjct: 1078  706

Query: 723  782
           
Sbjct: 1138  706

Query: 783  842
           
Sbjct: 1198  706

Query: 843  879
           
Sbjct: 1258  706


HSP 2 Score: 350.5 bits (898), Expect = 1.8e-96
Identity = 171/228 (75.00%), Postives = 191/228 (83.77%), Query Frame = 2 

Query: 872  MAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTG 931
            MAKQTMA+S QA+++RADQK+YHLQTPQ+P+VRT TYT Y+IDE PTGTNAIVAVLA+TG
Sbjct: 709  MAKQTMAYSTQALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTG 768

Query: 932  YDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDA 991
            +DMEDAMILNKSSVERGM HGQIYQTE IDLSDQ +R     K FRRS  + +    IDA
Sbjct: 769  FDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSFRRST-NKAEHFRIDA 828

Query: 992  DGLPYVGQMIXPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRF 1051
            DGLP VGQ + PDEPYCSIYDEV   TR MK KG++ VIVD+VSVD+K+K +PQ+ NIRF
Sbjct: 829  DGLPSVGQKLYPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKKHPQRANIRF 888

Query: 1052 RRPRNPMIGDKFSSRHGQKGVCSQLWPDIDMPFCGATGMRPDLIINPH 1111
            R  RNP+IGDKFSSRHGQKGVCSQLWPDIDMPF G TGMRPDLIINPH
Sbjct: 889  RHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPH 935

Query: 1112  1171
            
Sbjct: 949   935

Query: 1172  1231
            
Sbjct: 1009  935

Query: 1232  1291
            
Sbjct: 1069  935

Query: 1292  1351
            
Sbjct: 1129  935

Query: 1352  1411
            
Sbjct: 1189  935

Query: 1412  1471
            
Sbjct: 1249  935

Query: 1472  1531
            
Sbjct: 1309  935

Query: 1532  1556
            
Sbjct: 1369  935

[Close]
BLAST of MU43795 vs. TAIR10
Match: AT5G45140.1 (AT5G45140.1 nuclear RNA polymerase C2)

HSP 1 Score: 122.5 bits (306), Expect = 7.8e-28
Identity = 85/244 (34.84%), Postives = 122/244 (50.00%), Query Frame = 2 

Query: 872  MAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTG 931
            M KQ M         R D  LY L  PQ P++ T T      D+   G NA VAV++++G
Sbjct: 711  MGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSFSG 770

Query: 932  YDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSRSQKMF-RRSNIDTSVRSIID 991
            YD+EDA+++NKSS++RG F   I   + + +S + +  +  + +  +R+  D     I+D
Sbjct: 771  YDIEDAIVMNKSSLDRG-FGRCIVMKKIVAMSQKYDNCTADRILIPQRTGPDAEKMQILD 830

Query: 992  ADGLPYVGQMIXPDEPYCSIYDEVAGTTR-TMKLKGS--------------EAVIVDYVS 1051
             DGL   G++I P++ Y +    V   T+ T  L  S              E  +VD V+
Sbjct: 831  DDGLATPGEIIRPNDIYINKQVPVDTVTKFTSALSDSQYRPAREYFKGPEGETQVVDRVA 890

Query: 1052 VDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDIDMPFCGATGMRPDLI 1111
            +   +K     +    R  R P +GDKFSSRHGQKGVC  +    D PF    G+ PDLI
Sbjct: 891  L-CSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPF-SELGICPDLI 950

Query: 1112 INPH 1171
            +NPH
Sbjct: 951  MNPH 951

Query: 1172  1231
            
Sbjct: 1011  951

Query: 1232  1291
            
Sbjct: 1071  951

Query: 1292  1351
            
Sbjct: 1131  951

Query: 1352  1411
            
Sbjct: 1191  951

Query: 1412  1471
            
Sbjct: 1251  951

Query: 1472  1531
            
Sbjct: 1311  951

Query: 1532  1556
            
Sbjct: 1371  951


HSP 2 Score: 75.9 bits (185), Expect = 8.3e-14
Identity = 83/319 (26.02%), Postives = 127/319 (39.81%), Query Frame = 3 

Query: 9   MDKNPSKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGAS 68
           ++K+    IS  +E  L TG    +       R G T    RL+F+  +     +     
Sbjct: 414 LNKDSRYSISLGLERTLSTGNFDIKRFR--MHRKGMTQVLTRLSFIGSMGFITKI--SPQ 473

Query: 69  FAGLRTTT-VRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYKI 128
           F   R  +  R L P  WG LCP  TP+GE CGL+ +L     +T+       V   YK+
Sbjct: 474 FEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKL 533

Query: 129 RTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLLDGRLVGYISSNEVEKVVAHLRRLKVLS 188
             + L VL A           ++  PD   V+L+G ++G    +  +     LRRL+   
Sbjct: 534 GVTDLEVLSA----------EELHTPDSFLVILNGLILG--KHSRPQYFANSLRRLRRAG 593

Query: 189 PHVIPDDLEVG-YVPLSISGAYPGLYLFTSPSRFVRP--VKNLSISPEDNHN-------- 248
                   ++G +V +  +     +Y+ +   R  RP  + +  IS    H+        
Sbjct: 594 --------KIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDGV 653

Query: 249 -----------IELIGPFEQ--VFMEIRCPDG----GDGGRKDEFPATHEEIHPTGMLSV 308
                      IE +   E+    + +   DG     +G    +   TH EI P  +L V
Sbjct: 654 RTFDDFIRDGLIEYLDVNEENNALIALYESDGTTELDEGAEAAKADTTHIEIEPFTILGV 708

Query: 309 VANLTPWSDHNQSPRNIWQ 368
           VA L P+  HNQSPRN +Q
Sbjct: 714 VAGLIPYPHHNQSPRNTYQ 708

Query: 369  428
           
Sbjct: 774  708

Query: 429  488
           
Sbjct: 834  708

Query: 489  548
           
Sbjct: 894  708

Query: 549  608
           
Sbjct: 954  708

Query: 609  668
           
Sbjct: 1014  708

Query: 669  728
           
Sbjct: 1074  708

Query: 729  788
           
Sbjct: 1134  708

Query: 789  848
           
Sbjct: 1194  708

Query: 849  879
           
Sbjct: 1254  708

[Close]
BLAST of MU43795 vs. TAIR10
Match: AT4G21710.1 (AT4G21710.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 120.2 bits (300), Expect = 3.9e-27
Identity = 81/248 (32.66%), Postives = 118/248 (47.58%), Query Frame = 2 

Query: 872  MAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTG 931
            M KQ M   +   ++R D   Y L  PQ P+V T      +  + P G NAIVA+  Y+G
Sbjct: 736  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSG 795

Query: 932  YDMEDAMILNKSSVERGMFHGQIYQT--------ETIDLSDQGNRSSRSQKMFRRSNIDT 991
            Y+ ED++I+N+SS++RG F    +++         T+   D G     S    R  + D 
Sbjct: 796  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGMRHGSYDK 855

Query: 992  SVRSIIDADGLPYVGQMIXPDEPYCS-----IYDEVAGTT-------RTMKLKGSEAVIV 1051
                 +D DGL   G  +  ++           DE  G +        ++ L+ SE  +V
Sbjct: 856  -----LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMV 915

Query: 1052 DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDIDMPFCGATGMR 1111
            D V +   N +  + V +R R  R P IGDKFSSRHGQKG     +   DMP+    G+ 
Sbjct: 916  DQVLL-TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT-IEGVT 975

Query: 1112 PDLIINPH 1171
            PD+I+NPH
Sbjct: 976  PDIIVNPH 976

Query: 1172  1231
            
Sbjct: 1036  976

Query: 1232  1291
            
Sbjct: 1096  976

Query: 1292  1351
            
Sbjct: 1156  976

Query: 1352  1411
            
Sbjct: 1216  976

Query: 1412  1471
            
Sbjct: 1276  976

Query: 1472  1531
            
Sbjct: 1336  976

Query: 1532  1556
            
Sbjct: 1396  976


HSP 2 Score: 48.5 bits (114), Expect = 1.4e-05
Identity = 30/99 (30.30%), Postives = 44/99 (44.44%), Query Frame = 3 

Query: 24  SKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLR 83
           +K I+S ++  L TG            RAG +    RL +   +SH R ++      G +
Sbjct: 442 AKTITSGLKYSLATGNWGQANAAGT--RAGVSQVLNRLTYASTLSHLRRLNSPIGREG-K 501

Query: 84  TTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRIT 143
               R+L    WG +CP  TP+G+ CGL+ +L     IT
Sbjct: 502 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 537

Query: 144  203
           
Sbjct: 562  537

Query: 204  263
           
Sbjct: 622  537

Query: 264  321
           
Sbjct: 682  537


HSP 3 Score: 46.6 bits (109), Expect = 5.4e-05
Identity = 24/70 (34.29%), Postives = 38/70 (54.29%), Query Frame = 3 

Query: 783 THEEIHPTGMLSVVANLTPWSDHNQSPRNIWQNKQWHSLCKLFGT-----VQIKSYTIFR 842
           TH EIHP+ +L V A++ P+ DHNQSPRN +Q+        ++ T     +   +Y ++ 
Sbjct: 702 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 761

Query: 843 LLRPLLFVQA 902
             +PL+  +A
Sbjct: 762 PQKPLVTTRA 771

Query: 903  962
           
Sbjct: 822  771

Query: 963  978
           
Sbjct: 882  771

[Close]
BLAST of MU43795 vs. TAIR10
Match: AT3G23780.1 (AT3G23780.1 nuclear RNA polymerase D2A)

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-23
Identity = 74/230 (32.17%), Postives = 112/230 (48.70%), Query Frame = 2 

Query: 878  KQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYD 937
            +Q + FS      R D     L  PQ P+ +T        +    G NAIVAV  + GY+
Sbjct: 724  QQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYN 783

Query: 938  MEDAMILNKSSVERGMFHGQ---IYQTETIDLSDQGNRSSRSQKM-FRRSNIDTSVRSII 997
             ED++++NK+S+ERGMF  +    Y+ E +D  D   R    + + F +++        +
Sbjct: 784  QEDSIVMNKASLERGMFRSEQIRSYKAE-VDAKDSEKRKKMDELVQFGKTHSKIGKVDSL 843

Query: 998  DADGLPYVGQMIXPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNI 1057
            + DG P++G  +   +       E +G   ++KLK +E  IV  V +   N        +
Sbjct: 844  EDDGFPFIGANMSTGDIVIGRCTE-SGADHSIKLKHTERGIVQKVVLS-SNDEGKNFAAV 903

Query: 1058 RFRRPRNPMIGDKFSSRHGQKGVCSQLWPDIDMPFCGATGMRPDLIINPH 1117
              R+ R+P +GDKFSS HGQKGV   L    + PF    G+ PD++INPH
Sbjct: 904  SLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFT-IQGIVPDIVINPH 949

Query: 1118  1177
            
Sbjct: 964   949

Query: 1178  1237
            
Sbjct: 1024  949

Query: 1238  1297
            
Sbjct: 1084  949

Query: 1298  1357
            
Sbjct: 1144  949

Query: 1358  1417
            
Sbjct: 1204  949

Query: 1418  1477
            
Sbjct: 1264  949

Query: 1478  1537
            
Sbjct: 1324  949

Query: 1538  1556
            
Sbjct: 1384  949


HSP 2 Score: 40.4 bits (93), Expect = 3.9e-03
Identity = 63/282 (22.34%), Postives = 117/282 (41.49%), Query Frame = 3 

Query: 96  LQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGE 155
           +++ +G      R N L+ +   R   +   + G +    R   P  WG +C + TPDGE
Sbjct: 468 MERVSGVVANLGRANPLQTLIDLRRTRQQVLYTG-KVGDARYPHPSHWGRVCFLSTPDGE 527

Query: 156 PCGLLNHLTSTCRITSYFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGPPDVL- 215
            CGL+ +++    +++            +   S++  L A GM     +L+      +  
Sbjct: 528 NCGLVKNMSLLGLVST------------QSLESVVEKLFACGM----EELMDDTCTPLFG 587

Query: 216 --NVLLDGRLVGYISSNEVEKVVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLF 275
              VLL+G  VG  + +  E  VA L+  +  S   +P ++E+             + +F
Sbjct: 588 KHKVLLNGDWVGLCADS--ESFVAELKSRRRQSE--LPREMEI-----KRDKDDNEVRIF 647

Query: 276 TSPSRFVRP---VKNLSISPE------------DNHNIELIGPFEQVFMEIRCPDGGDGG 335
           T   R +RP   V+NL    +            D+  +ELIG  E+   +     G    
Sbjct: 648 TDAGRLLRPLLVVENLQKLKQEKPSQYPFDHLLDHGILELIGIEEE--EDCNTAWGIKQL 707

Query: 336 RKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNIWQNKQ 395
            K+    TH E+  + +L V   + P+++H+   R ++Q+++
Sbjct: 708 LKEPKIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQK 721

Query: 396  455
           
Sbjct: 768  721

Query: 456  515
           
Sbjct: 828  721

Query: 516  575
           
Sbjct: 888  721

Query: 576  635
           
Sbjct: 948  721

Query: 636  695
           
Sbjct: 1008  721

Query: 696  755
           
Sbjct: 1068  721

Query: 756  815
           
Sbjct: 1128  721

Query: 816  875
           
Sbjct: 1188  721

Query: 876  888
           
Sbjct: 1248  721

[Close]
BLAST of MU43795 vs. TAIR10
Match: AT3G18090.1 (AT3G18090.1 nuclear RNA polymerase D2B)

HSP 1 Score: 107.5 bits (267), Expect = 2.6e-23
Identity = 74/230 (32.17%), Postives = 111/230 (48.26%), Query Frame = 2 

Query: 878  KQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYD 937
            +Q + FS      R D     L  PQ P+ +T        +    G NAIVAV  + GY+
Sbjct: 606  QQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLEKEVLFNGQNAIVAVNVHLGYN 665

Query: 938  MEDAMILNKSSVERGMFHGQ---IYQTETIDLSDQGNRSSRSQKM-FRRSNIDTSVRSII 997
             ED++++NK+S+ERGMF  +    Y+ E +D  D   R    + + F ++         +
Sbjct: 666  QEDSIVMNKASLERGMFRSEQIRSYKAE-VDTKDSEKRKKMDELVQFGKTYSKIGKVDSL 725

Query: 998  DADGLPYVGQMIXPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNI 1057
            + DG P++G  +   +       E +G   ++KLK +E  IV  V +   N        +
Sbjct: 726  EDDGFPFIGANMSTGDIVIGRCTE-SGADHSIKLKHTERGIVQKVVLS-SNDEGKNFAAV 785

Query: 1058 RFRRPRNPMIGDKFSSRHGQKGVCSQLWPDIDMPFCGATGMRPDLIINPH 1117
              R+ R+P +GDKFSS HGQKGV   L    + PF    G+ PD++INPH
Sbjct: 786  SLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFT-IQGIVPDIVINPH 831

Query: 1118  1177
            
Sbjct: 846   831

Query: 1178  1237
            
Sbjct: 906   831

Query: 1238  1297
            
Sbjct: 966   831

Query: 1298  1357
            
Sbjct: 1026  831

Query: 1358  1417
            
Sbjct: 1086  831

Query: 1418  1477
            
Sbjct: 1146  831

Query: 1478  1537
            
Sbjct: 1206  831

Query: 1538  1556
            
Sbjct: 1266  831


HSP 2 Score: 42.4 bits (98), Expect = 1.0e-03
Identity = 63/279 (22.58%), Postives = 113/279 (40.50%), Query Frame = 3 

Query: 96  LQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGE 155
           +++ +G      R N L+ +   R   +   + G +    R   P  WG +C + TPDGE
Sbjct: 350 MERVSGVVANLGRANPLQTLIDLRRTRQQVLYTG-KVGDARHPHPSHWGRVCFLSTPDGE 409

Query: 156 PCGLLNHLTSTCRITSYFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGPPDVLN 215
            CGL+ +++    +    ++QG          S++ +L   GM   L             
Sbjct: 410 NCGLVKNMS----LLGLVSTQG--------LESVVEMLFTCGM-EELMNDTSTPLCGKHK 469

Query: 216 VLLDGRLVGYISSNEVEKVVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSP 275
           VLL+G  VG  + +  E  V  L+  +  S   +P ++E+             + +FT  
Sbjct: 470 VLLNGDWVGLCADS--ESFVGELKSRRRQSE--LPLEMEI-----KRDKDDNEVRIFTDA 529

Query: 276 SRFVRP---VKNLSISPEDNHN------------IELIGPFEQVFMEIRCPDGGDGGRKD 335
            R +RP   V+NL    +D               +ELIG  E+   +     G     K+
Sbjct: 530 GRLLRPLLVVENLHKLKQDKPTQYPFKHLLDQGILELIGIEEE--EDCTTAWGIKQLLKE 589

Query: 336 EFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNIWQNKQ 395
               TH E+  + +L V   + P+++H+   R ++Q+++
Sbjct: 590 PKNYTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQK 603

Query: 396  455
           
Sbjct: 650  603

Query: 456  515
           
Sbjct: 710  603

Query: 516  575
           
Sbjct: 770  603

Query: 576  635
           
Sbjct: 830  603

Query: 636  695
           
Sbjct: 890  603

Query: 696  755
           
Sbjct: 950  603

Query: 756  815
           
Sbjct: 1010  603

Query: 816  875
           
Sbjct: 1070  603

Query: 876  888
           
Sbjct: 1130  603

[Close]
BLAST of MU43795 vs. NCBI nr
Match: gi|659089195|ref|XP_008445376.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Cucumis melo])

HSP 1 Score: 594.7 bits (1532), Expect = 1.5e-166
Identity = 290/292 (99.32%), Postives = 292/292 (100.00%), Query Frame = 3 

Query: 3   KVMDKNPSKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG 62
           KVMDKNPSKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG
Sbjct: 412 KVMDKNPSKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG 471

Query: 63  ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYK 122
           ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYK
Sbjct: 472 ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYK 531

Query: 123 IRTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLLDGRLVGYISSNEVEKVVAHLRRLKVL 182
           IRTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLLDGRLVGYISSNEVEKVVAHLRRLKVL
Sbjct: 532 IRTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLLDGRLVGYISSNEVEKVVAHLRRLKVL 591

Query: 183 SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV 242
           SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV
Sbjct: 592 SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV 651

Query: 243 FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNIWQ 302
           FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRN++Q
Sbjct: 652 FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQ 703

Query: 303  362
           
Sbjct: 712  703

Query: 363  422
           
Sbjct: 772  703

Query: 423  482
           
Sbjct: 832  703

Query: 483  542
           
Sbjct: 892  703

Query: 543  602
           
Sbjct: 952  703

Query: 603  662
           
Sbjct: 1012  703

Query: 663  722
           
Sbjct: 1072  703

Query: 723  782
           
Sbjct: 1132  703

Query: 783  842
           
Sbjct: 1192  703

Query: 843  879
           
Sbjct: 1252  703

[Close]
BLAST of MU43795 vs. NCBI nr
Match: gi|449458081|ref|XP_004146776.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Cucumis sativus])

HSP 1 Score: 585.5 bits (1508), Expect = 9.2e-164
Identity = 284/292 (97.26%), Postives = 290/292 (99.32%), Query Frame = 3 

Query: 3   KVMDKNPSKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG 62
           KVMDKNPSKQ+SSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG
Sbjct: 412 KVMDKNPSKQVSSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG 471

Query: 63  ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYK 122
           ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITS+FNSQGKVRDFYK
Sbjct: 472 ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYK 531

Query: 123 IRTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLLDGRLVGYISSNEVEKVVAHLRRLKVL 182
           IRTSILSVLIAVGMIPSLPKLVQMG PD LNVLLDGR+VGYISSNEVEK+VAHLRRLKVL
Sbjct: 532 IRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVL 591

Query: 183 SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV 242
           SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV
Sbjct: 592 SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV 651

Query: 243 FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNIWQ 302
           FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRN++Q
Sbjct: 652 FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQ 703

Query: 303  362
           
Sbjct: 712  703

Query: 363  422
           
Sbjct: 772  703

Query: 423  482
           
Sbjct: 832  703

Query: 483  542
           
Sbjct: 892  703

Query: 543  602
           
Sbjct: 952  703

Query: 603  662
           
Sbjct: 1012  703

Query: 663  722
           
Sbjct: 1072  703

Query: 723  782
           
Sbjct: 1132  703

Query: 783  842
           
Sbjct: 1192  703

Query: 843  879
           
Sbjct: 1252  703

[Close]
BLAST of MU43795 vs. NCBI nr
Match: gi|700192552|gb|KGN47756.1| (hypothetical protein Csa_6G400300 [Cucumis sativus])

HSP 1 Score: 585.5 bits (1508), Expect = 9.2e-164
Identity = 284/292 (97.26%), Postives = 290/292 (99.32%), Query Frame = 3 

Query: 3   KVMDKNPSKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG 62
           KVMDKNPSKQ+SSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG
Sbjct: 492 KVMDKNPSKQVSSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG 551

Query: 63  ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYK 122
           ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITS+FNSQGKVRDFYK
Sbjct: 552 ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYK 611

Query: 123 IRTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLLDGRLVGYISSNEVEKVVAHLRRLKVL 182
           IRTSILSVLIAVGMIPSLPKLVQMG PD LNVLLDGR+VGYISSNEVEK+VAHLRRLKVL
Sbjct: 612 IRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVL 671

Query: 183 SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV 242
           SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV
Sbjct: 672 SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV 731

Query: 243 FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNIWQ 302
           FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRN++Q
Sbjct: 732 FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQ 783

Query: 303  362
           
Sbjct: 792  783

Query: 363  422
           
Sbjct: 852  783

Query: 423  482
           
Sbjct: 912  783

Query: 483  542
           
Sbjct: 972  783

Query: 543  602
           
Sbjct: 1032  783

Query: 603  662
           
Sbjct: 1092  783

Query: 663  722
           
Sbjct: 1152  783

Query: 723  782
           
Sbjct: 1212  783

Query: 783  842
           
Sbjct: 1272  783

Query: 843  879
           
Sbjct: 1332  783

[Close]
BLAST of MU43795 vs. NCBI nr
Match: gi|470142979|ref|XP_004307166.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 506.9 bits (1304), Expect = 4.1e-140
Identity = 244/292 (83.56%), Postives = 269/292 (92.12%), Query Frame = 3 

Query: 3   KVMDKNPSKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG 62
           KV+DKNP++QIS AVENMLKTGR+ TQTGLDLQQRAGF+VQAERLNFLRF+SHFRAVHRG
Sbjct: 411 KVLDKNPTRQISLAVENMLKTGRINTQTGLDLQQRAGFSVQAERLNFLRFLSHFRAVHRG 470

Query: 63  ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYK 122
           ASFAGLRTT+VRKLLPESWGFLCPVHTPDGEPCGLLNH+T TCRITSYF++QG +RDF K
Sbjct: 471 ASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTRTCRITSYFDAQGNIRDFTK 530

Query: 123 IRTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLLDGRLVGYISSNEVEKVVAHLRRLKVL 182
           IR SIL+VLI VGMIPSLP LV +G P  L+VLLDGR+VGYISS +VEKVVAHLR+LKV 
Sbjct: 531 IRMSILNVLIEVGMIPSLPMLVHVGLPANLSVLLDGRVVGYISSTQVEKVVAHLRKLKVS 590

Query: 183 SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV 242
           +  VIPDDLEVGYVPLS+ GAYPGLYLFTSPSRFVRPVKN+SIS  +  NIELIGPFEQV
Sbjct: 591 AASVIPDDLEVGYVPLSMGGAYPGLYLFTSPSRFVRPVKNISISAVEGQNIELIGPFEQV 650

Query: 243 FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNIWQ 302
           FMEI+CPDG DGGRKD FPATHEEIHPTGMLSVVANLTPWS+HNQSPRN++Q
Sbjct: 651 FMEIKCPDGRDGGRKDAFPATHEEIHPTGMLSVVANLTPWSEHNQSPRNMYQ 702

Query: 303  362
           
Sbjct: 711  702

Query: 363  422
           
Sbjct: 771  702

Query: 423  482
           
Sbjct: 831  702

Query: 483  542
           
Sbjct: 891  702

Query: 543  602
           
Sbjct: 951  702

Query: 603  662
           
Sbjct: 1011  702

Query: 663  722
           
Sbjct: 1071  702

Query: 723  782
           
Sbjct: 1131  702

Query: 783  842
           
Sbjct: 1191  702

Query: 843  879
           
Sbjct: 1251  702

[Close]
BLAST of MU43795 vs. NCBI nr
Match: gi|296087844|emb|CBI35100.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 505.8 bits (1301), Expect = 9.2e-140
Identity = 240/292 (82.19%), Postives = 269/292 (92.12%), Query Frame = 3 

Query: 3   KVMDKNPSKQISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRG 62
           KVMDKNPS+QIS AVENMLKTGRLVTQ+GLDLQQRAG TVQAERLNFLRF+SHFRAVHRG
Sbjct: 374 KVMDKNPSRQISLAVENMLKTGRLVTQSGLDLQQRAGMTVQAERLNFLRFLSHFRAVHRG 433

Query: 63  ASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYK 122
           ASFAGLRTT+VRKLLPE+WGFLCPVHTPDGEPCGLLNH+ STCRITSYF+S+G  RDF+K
Sbjct: 434 ASFAGLRTTSVRKLLPEAWGFLCPVHTPDGEPCGLLNHMASTCRITSYFDSRGNTRDFFK 493

Query: 123 IRTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLLDGRLVGYISSNEVEKVVAHLRRLKVL 182
           IR SILSVLI +GM P+LPKLVQ GPP+VL+V+LDGR+VG I S+EVE  V HLRRLKV 
Sbjct: 494 IRMSILSVLIGIGMTPALPKLVQAGPPEVLSVILDGRVVGSIPSSEVETAVNHLRRLKVS 553

Query: 183 SPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQV 242
           +  VIPDDLEVGY+PLS+ GAYPGLYLFTSPSRFVRPV+N+SI  E+ H+IELIGPFEQV
Sbjct: 554 AISVIPDDLEVGYIPLSMGGAYPGLYLFTSPSRFVRPVRNISIPSEEGHDIELIGPFEQV 613

Query: 243 FMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNIWQ 302
           +MEIRCPDG DGGR++ FPATHEEIHPTGMLSVVA+LTPWSDHNQSPRN++Q
Sbjct: 614 YMEIRCPDGSDGGRRNIFPATHEEIHPTGMLSVVASLTPWSDHNQSPRNMYQ 665

Query: 303  362
           
Sbjct: 674  665

Query: 363  422
           
Sbjct: 734  665

Query: 423  482
           
Sbjct: 794  665

Query: 483  542
           
Sbjct: 854  665

Query: 543  602
           
Sbjct: 914  665

Query: 603  662
           
Sbjct: 974  665

Query: 663  722
           
Sbjct: 1034  665

Query: 723  782
           
Sbjct: 1094  665

Query: 783  842
           
Sbjct: 1154  665

Query: 843  879
           
Sbjct: 1214  665

The following BLAST results are available for this feature:
BLAST of MU43795 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NRPA2_ARATH2.7e-12373.29DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana GN=NRPA2 PE=2 SV... [more]
RPA2_SCHPO6.1e-6746.56Probable DNA-directed RNA polymerase I subunit RPA2 OS=Schizosaccharomyces pombe... [more]
RPA2_NEUCR4.0e-6647.08DNA-directed RNA polymerase I subunit RPA2 OS=Neurospora crassa (strain ATCC 246... [more]
RPA2_YEAST5.7e-6548.25DNA-directed RNA polymerase I subunit RPA135 OS=Saccharomyces cerevisiae (strain... [more]
RPA2_ASHGO2.2e-6448.60DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii (strain ATCC 10895... [more]
BLAST of MU43795 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIZ8_CUCSA1.6e-16297.26DNA-directed RNA polymerase subunit beta OS=Cucumis sativus GN=Csa_6G400300 PE=3... [more]
A0A0A0KIZ8_CUCSA4.8e-12799.12DNA-directed RNA polymerase subunit beta OS=Cucumis sativus GN=Csa_6G400300 PE=3... [more]
F6HVC4_VITVI1.8e-10581.58DNA-directed RNA polymerase subunit beta OS=Vitis vinifera GN=VIT_13s0084g00600 ... [more]
A0A059BI44_EUCGR7.7e-10179.39Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03213 PE=3 SV=1[more]
A0A059BJ30_EUCGR7.7e-10179.39DNA-directed RNA polymerase subunit beta OS=Eucalyptus grandis GN=EUGRSUZ_G03213... [more]
BLAST of MU43795 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G29940.11.5e-12473.29 nuclear RNA polymerase A2[more]
AT5G45140.17.8e-2834.84 nuclear RNA polymerase C2[more]
AT4G21710.13.9e-2732.66 DNA-directed RNA polymerase family protein[more]
AT3G23780.11.2e-2332.17 nuclear RNA polymerase D2A[more]
AT3G18090.12.6e-2332.17 nuclear RNA polymerase D2B[more]
BLAST of MU43795 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659089195|ref|XP_008445376.1|1.5e-16699.32PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Cucumis melo][more]
gi|449458081|ref|XP_004146776.1|9.2e-16497.26PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Cucumis sativus][more]
gi|700192552|gb|KGN47756.1|9.2e-16497.26hypothetical protein Csa_6G400300 [Cucumis sativus][more]
gi|470142979|ref|XP_004307166.1|4.1e-14083.56PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Fragaria vesca subsp... [more]
gi|296087844|emb|CBI35100.3|9.2e-14082.19unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR007120DNA-dir_RNAP_su2_dom
IPR007121RNA_pol_bsu_CS
IPR007645RNA_pol_Rpb2_3
IPR009674Rpa2_dom_4
IPR014724RNA_pol_RPB2_OB-fold
IPR015712DNA-dir_RNA_pol_su2
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed RNA polymerase activity
GO:0032549ribonucleoside binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
MELO3C011383MELO3C011383gene
MELO3C011382MELO3C011382gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
DEa0003I01DEa0003I01EST
DEa0004H04DEa0004H04EST
TEa0008J24TEa0008J24EST


InterPro
Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6GENE3DG3DSA:2.40.270.10coord: 339..353
score: 1.2E-29coord: 467..516
score: 1.2
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6PFAMPF00562RNA_pol_Rpb2_6coord: 272..516
score: 7.1
IPR007121RNA polymerase, beta subunit, conserved sitePROSITEPS01166RNA_POL_BETAcoord: 477..489
scor
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 40..103
score: 2.4
IPR009674DNA-directed RNA polymerase I subunit RPA2, domain 4PFAMPF06883RNA_pol_Rpa2_4coord: 157..214
score: 3.1
IPR014724RNA polymerase Rpb2, OB-foldGENE3DG3DSA:2.40.50.150coord: 354..421
score: 6.
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 5..516
score: 3.7E
NoneNo IPR availableGENE3DG3DSA:3.90.1100.10coord: 267..338
score: 3.2E-35coord: 6..114
score: 3.2
NoneNo IPR availablePANTHERPTHR20856:SF5DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2coord: 5..516
score: 3.7E
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 6..516
score: 3.66E