MELO3C011355.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C011355.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionDNA-directed RNA polymerase subunit
Locationchr03 : 26736449 .. 26740715 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCCTATTTAATGGCATATTCGAAAATAATGTAAAACTAAATTCTTTTTTTTAAAAAAAAAGAAAAAGAAAAGCAAAACCCTATTTTCACCTTCTAGCCCCACGCCTGTTGCCGGCTCGTCACCCGCCTCCGCCGCCGCTCGTTACTGAATCTCGCCCCGACAAGTTGTCTCTAGGTAAAACAGCAAACCGTTCATCGTTTCTCTTCCATCAATGATCGATTGAGCTTGGTTGCCATAATTTTGAATGGAATCGAAATTCTGATTTCCGACGGTTGGCTTTCGTCCGGTTCCAATTTCCGCGCGTTTAGATGAATATCCACACATTCTAGCGGTCGGTTCGTTCCATATTTTCATTTTCGAACCGGACCGAACCTGTTCGCAGTCCTGCTCCTTGACCTTGAGGTTTGTAGCTTCCAAAACCCAAAACCCAGGATGAAACTATCTTGTCTTCATTGTTCTGCTTCAGCAAGTTTTCTATAAGGTTGATCATTGATCCATATCTCCGCCCATCTCAGCTCTCTTTGGCTAACTTTTCGACAAGAACTCTGTGAAATCTCTTTCTCGGGCTTCATTAATTTTAGCAAAAATATTTAACTATAGATGATAACTGGGATAGTTTGAGGTTATCGAACGGATCAAATTGAGCTTTCTACTTGTTATCTTTCGGATATCTGAATGACCCATCTTAGTTATTCTTTTGATACATTATGTTCGTTTTAATCTATTGTGGGCATGAGGTCCTTCATGCTTTTCAATTGAGGTTTTAGTTTATTGGCTGGTTCTAGGTTTTTTGAAATGGAAACAAAATTTGAGAATTGACTGCTTCTAGATGAAGCTCCAATTTCCCTTATTGTTTATCCAAATCCCCTTTTTGCTATTACAATTCTACCATCCTTTTAGCCTCAACTTTCCTGTCTTTATTTGTTGTACTTGAACTTCTTATGATTATTCTAACACCCCCCCNNNNNNNNNNNCCTCTTTTTTGTGGACTTTGTTAGTTAGGAAGCTATTGGGGAAGCAGCAAGGACCACTCATGGCTTATTCCCGTGGACACGACTTCTTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCTGCTCAACGAAATATGTTGAGTGCCCTTTGTGCAAGTCTAAGCGAAGTGCAAAAGGTGGCCATAAACATTGGATTTAAGCTTATTGCATTGTAGTTATTTACTTTTATTTTTTTGTTTTGGATAATTTAAACACTCCAACACTCATTACGTATGTGAATAAGTTTTTAATCCGGTATATCTTGCTACAAGTAAACTTTGTTTTTATCTGATTGAATTGTGGTTTGGTTCATTTTTCCTTCGAGTTTATCTGAGTAAAATGTGAAAAACACGTCTATTTTTCCATTTCCTATCTTGAGTTTCTGTTTTTCTTTTTAATATTTATACTAGAATAAACTGTGTCTGGGTTGTGAGTTGGTTGTTCTTAATCTATCACCTTAAATATTTTTAAGAAAACTTCTTGTAGATAGGAGAGTAAGAGTTTCTATCTGGGAATTTGCAGCATCTTCTGCTTTGAGTGTTCAGCTTTGAAAACATGGTTTCTCATGCAACATTAGTGTTCATCTGTTCAACAGGAGTAGTTCACAGGATTTTTATTTGAGAAGGTTACCGCTGCGCTGATTGCTTATGCATTTTGTTTGAATCAAATCATAGATAAGTTGACTATCATTATTTTGATGAAAAGCTAGCTTCCATTAGGATGGGTGATTGTATTTATATATATATATATATATATATAAACCCTTCTCAAATAGGACACAAAGAAGCTTCCCTTGATGTGGCCAAACCTTTCATTTAGTTTTGCTATTCGGAAAGGAACCAAGAAGTTCACAGACGAGAGTCATCCTTTAGTTCATATTATCATCCTCTGCCATCACATTACCCCTAAGGATTGAGTATAATTTGGAACGATACGGCAAAAGCCGAGGAAATTTTGAGATGATTTTAGAGAGGATAGTTTTGAACCTATTTTCAAACATTTATCAAGAATTTTGTAAGAGCCCATAGCTAGGGAACTTGTGGGTCTATTGCCTTTCACTTCCTTGCCGTCATCTGTAGCCATGAAGGCAGTATAAATCTTGGAAAATTCACATCGAGAATTCATTTCTTAAAGAAGCCTAGATGTTGACATGGTATCATGCTTGAGGGTATCCCAGGTTTTTGTGAAAAATTCTAAGGAAAAACAATCTGGATCCTTAGCTTGCTTGGCCTTGACGAAGACTAGAAATAGCCGTTGGACCTTTATAAATTAAAGCCTACAGGAGTAGAGAACCGGCTGAATTCCAACACAGACCATTGAAGATTATGTCGTCCTCTCAGCTTAGTCCGGTAGATTGCTGGGGTTTTGACTACTGGAACCTTTACTTCAGATGGCAACTGACTGATGTAGGTGAATGCATTTGCTGAGTTGTTCATTATTTGGAAAGGTTTTTTTTGAACTAGCAGGATGGACCTTGGAAAATTTGATTCGATTTCTTCTGAAACCTATTTTCCTACTATGGATGACTTTTGTAATTTTTCCTTTAAAAGTGCAATAGGGGAAAAGAGATACCCCGAGAAGGTTAAATTCTCTGTTTGGGACGTTGATCTTTCAGATGCCCTCCCTCTCTCTCACTCAGTTATTTAACTAATCAGTTTGCTTCCTTTTACAGATAAGAACTAACTGAACCTGTATCGTCGGTATAGAAATTAACATAAATAATGCTTAGCAAGACTTCTGCTCATCCCCTGATACACTATAGTTCTTGGTAGTATTACACCTAAGATGTGTGACATATTGGGAGTGGCTAATCATAAAGCTCATCCATAACTATAAGAATACCTGGACGGAAAAAACAGGTCTTATTTATGAATAAAATTGAATATCTCCCTACTACATTACATGGTGAAAGGACTGAACTAACCGTTAGTGCACGTGGAACCAAATTCTAACTACTAACAGCTGAGCAAAAACTGTAACATATCAAACTCATTTAAATTTTCAGGCTGGTTACTCGTCTTATTCAAGGGCCCAAGTGCCATCACGATTTCCCTCAATGTCATTCAATTATAAATCTTGAAATTGATGTTCTGAAGGGTGTATACCAAATTATTTTAGAAGTTGATGGTATGCTTTCATGAATGGAGATATTGAAGTTGAGCAAATGCAATTGAGAAACTACTGTTTTAATATTTTATGCACTCTTTTATTTGGCATCTCTAACCGAATTCTCATGGCTTATTTCAGAGATCAACGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGTATGCCTTTTGAATCATAAGCACTATCCCCATGCTTTCTAGGTCTAAGGCACAGTATCCTTTCTGCAACACGCCTTTAGCAATGCTTTTTAAACTTTAGCATTCTCTTATAATTTCTGCTACTTTTATGATGCTTGCTAGGATTGTTTCTGGGTTTTTGTGGATTGTGAGAAGGGCTTAAACAAGCTATCTGTAATAGTTCTCTAGGTCCAGGCAAATCAATAAACCAGACCCTGGAAATTCTTATTGGGTAGAACATCTGGAACCGTGAAAATTTTTAGTATTAGCAAATGTCTATATGATGTAATATTCATATGATGCTCCCTTCTATTCGGTTGTCGGATATCAAAGAAATGTTTGATTTTGAAATCCTCGTGGCATTGCAGGAAATTAGAAAGCAGTTGGGAATTTCACTAATTGGTGAAGAGAAAATGCAGCTAGCAAAGGTAGTAGGAGAAAATAAGTTGTATGGTATTCGATTTTGCTTGAGATATGTAGTCCACTAATATGAAGCTGTGTGATGTTTGACAGGAAAGGAGAAGATGTGAAAAATGTGGAAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACACTTTACAAACATTAACAAAACTAGAATTGTGGGTTATTTAGGGTTTATTTCTGTCTCTTTTTTTTTCCATTAGAAAGAGTCATAAGTTTGAGTGTGGTTTGAATAAAAATGCAGATGAGATCGGCTGATGAAGGGCAGACCACATTTTATACCTGCACTAAATGCCATCATCAGACTAGAGAGAATTGATCTTCCATGCAATTTTTTCTAGGATGTCAGTGTTTTCATCCTTGGATTAGTTGGGTGGTTCCATTGGAATCCAAAAGCATAACATGATGAATTATGTTATTAAACAATTAAACTCGATCTTCATGGGATGATTTACTCTATATGAGAATATGACGAAGTAGCAAAATTCGTTGATTGATTT

mRNA sequence

AACCCTATTTAATGGCATATTCGAAAATAATGTAAAACTAAATTCTTTTTTTTAAAAAAAAAGAAAAAGAAAAGCAAAACCCTATTTTCACCTTCTAGCCCCACGCCTGTTGCCGGCTCGTCACCCGCCTCCGCCGCCGCTCGTTACTGAATCTCGCCCCGACAAGTTGTCTCTAGGTAAAACAGCAAACCGTTCATCGTTTCTCTTCCATCAATGATCGATTGAGCTTGGTTGCCATAATTTTGAATGGAATCGAAATTCTGATTTCCGACGGTTGGCTTTCGTCCGGTTCCAATTTCCGCGCGTTTAGATGAATATCCACACATTCTAGCGGTCGGTTCGTTCCATATTTTCATTTTCGAACCGGACCGAACCTGTTCGCAGTCCTGCTCCTTGACCTTGAGGTTTGTAGCTTCCAAAACCCAAAACCCAGGATGAAACTATCTTGTCTTCATTGTTCTGCTTCAGCAAGTTTTCTATAAGTTAGGAAGCTATTGGGGAAGCAGCAAGGACCACTCATGGCTTATTCCCGTGGACACGACTTCTTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCTGCTCAACGAAATATGTTGAGTGCCCTTTGTGCAAGTCTAAGCGAAGTGCAAAAGAGATCAACGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCACTAATTGGTGAAGAGAAAATGCAGCTAGCAAAGGAAAGGAGAAGATGTGAAAAATGTGGAAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCGGCTGATGAAGGGCAGACCACATTTTATACCTGCACTAAATGCCATCATCAGACTAGAGAGAATTGATCTTCCATGCAATTTTTTCTAGGATGTCAGTGTTTTCATCCTTGGATTAGTTGGGTGGTTCCATTGGAATCCAAAAGCATAACATGATGAATTATGTTATTAAACAATTAAACTCGATCTTCATGGGATGATTTACTCTATATGAGAATATGACGAAGTAGCAAAATTCGTTGATTGATTT

Coding sequence (CDS)

ATGGCTTATTCCCGTGGACACGACTTCTTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCTGCTCAACGAAATATGTTGAGTGCCCTTTGTGCAAGTCTAAGCGAAGTGCAAAAGAGATCAACGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCACTAATTGGTGAAGAGAAAATGCAGCTAGCAAAGGAAAGGAGAAGATGTGAAAAATGTGGAAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCGGCTGATGAAGGGCAGACCACATTTTATACCTGCACTAAATGCCATCATCAGACTAGAGAGAATTGA

Protein sequence

MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLGISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Homology
[Close]
BLAST of MELO3C011355.2 vs. NCBI nr
Match: XP_008445334.1 (PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_008445336.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_008445337.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_008445338.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo])

HSP 1 Score: 242.7 bits (618), Expect = 6.4e-61
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of MELO3C011355.2 vs. NCBI nr
Match: XP_004143007.1 (PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Cucumis sativus] >XP_004143009.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Cucumis sativus] >KGN62253.1 hypothetical protein Csa_2G345940 [Cucumis sativus])

HSP 1 Score: 233.0 bits (593), Expect = 5.0e-58
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSFCSTKYVECP CKS+RSAKEI GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLI EEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of MELO3C011355.2 vs. NCBI nr
Match: XP_023546814.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230.3 bits (586), Expect = 3.3e-57
Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSF STKYVECPLCKS+RSAKEI GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLI EEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of MELO3C011355.2 vs. NCBI nr
Match: XP_022144336.1 (DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_022144337.1 DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia])

HSP 1 Score: 228.8 bits (582), Expect = 9.5e-57
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSF STKYVECPLCKS+RSAKEI GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLI EEK+QL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of MELO3C011355.2 vs. NCBI nr
Match: XP_022962626.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata] >XP_022962627.1 DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata])

HSP 1 Score: 227.6 bits (579), Expect = 2.1e-56
Identity = 110/116 (94.83%), Postives = 112/116 (96.55%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           MAYS GHDFLFCNLCGTMLSF STKYVECPLCKS+RSAKEI GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSGGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLI EEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of MELO3C011355.2 vs. TAIR10
Match: AT3G25940.1 (TFIIB zinc-binding protein)

HSP 1 Score: 133.3 bits (334), Expect = 9.8e-32
Identity = 67/118 (56.78%), Postives = 87/118 (73.73%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           M  SR  +FLFCNLCGTML   STKY ECP CK+ R+AK+I  +EI+YTV+AE+IR++LG
Sbjct: 1   MEKSRESEFLFCNLCGTMLVLKSTKYAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELG 60

Query: 61  ISLIGEE---KMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 116
           ISL GE+   + +L K ++ CEKC + E  + +RQ RSADEGQTT+YTC  C H+  E
Sbjct: 61  ISLFGEKTQAEAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRFTE 118

[Close]
BLAST of MELO3C011355.2 vs. TAIR10
Match: AT1G20065.2 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-12
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 0 

Query: 1  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAE 54
          M  SR  D LFCNLCGTML   STKY ECPLC++ R+ KEI  + ++YTVT E
Sbjct: 1  MEKSRESDILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTE 53

[Close]
BLAST of MELO3C011355.2 vs. TAIR10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal)

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 35/114 (30.70%), Postives = 55/114 (48.25%), Query Frame = 0 

Query: 11  FCNLCGTMLS---------FCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLGI 70
           FC  CG +L          FCST    CP     +   EI  +++        ++K +  
Sbjct: 3   FCPTCGNLLRYEGGGNSRFFCST----CPYVAYIQRQVEIKKKQLL-------VKKSIEA 62

Query: 71  SLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 116
            +  ++    A+    C +CG+D+A+F+S Q+RSADE ++ FY C KC    RE
Sbjct: 63  VVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105

[Close]
BLAST of MELO3C011355.2 vs. TAIR10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal)

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 35/114 (30.70%), Postives = 55/114 (48.25%), Query Frame = 0 

Query: 11  FCNLCGTMLS---------FCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLGI 70
           FC  CG +L          FCST    CP   +     EI  +++        ++K +  
Sbjct: 3   FCPTCGNLLRYEGGGSSRFFCST----CPYVANIERRVEIKKKQLL-------VKKSIEP 62

Query: 71  SLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 116
            +  ++    A+    C +CG+D+A+F+S Q+RSADE ++ FY C KC    RE
Sbjct: 63  VVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105

[Close]
BLAST of MELO3C011355.2 vs. Swiss-Prot
Match: sp|Q1RMP0|RPA12_BOVIN (DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=ZNRD1 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 37/110 (33.64%), Postives = 59/110 (53.64%), Query Frame = 0 

Query: 8   DFLFCNLCGTMLSFCSTK-YVECPLCKSKRSAKEINGREISYTVTAEEIRKQLGISLIGE 67
           D  FC  CG++L     +  V C  C    + ++  G+ +  +V   ++   + +S+   
Sbjct: 13  DLDFCPDCGSVLPLPGVQDAVACTRCGFSINVRDFEGKVVKTSVVFNKLGTAMPLSMEEG 72

Query: 68  EKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 73  PEFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 122

[Close]
BLAST of MELO3C011355.2 vs. Swiss-Prot
Match: sp|Q5TM50|RPA12_MACMU (DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=ZNRD1 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 37/110 (33.64%), Postives = 60/110 (54.55%), Query Frame = 0 

Query: 8   DFLFCNLCGTMLSFCSTK-YVECPLCKSKRSAKEINGREISYTVTAEEIRKQLGISLIGE 67
           D  FC+ CG++L     +  V C  C    + ++  G+ +  +V   ++   + +S+   
Sbjct: 16  DLDFCSDCGSVLPLPGAQDTVTCTRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75

Query: 68  EKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 76  PECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]
BLAST of MELO3C011355.2 vs. Swiss-Prot
Match: sp|Q9P1U0|RPA12_HUMAN (DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=ZNRD1 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-10
Identity = 37/110 (33.64%), Postives = 60/110 (54.55%), Query Frame = 0 

Query: 8   DFLFCNLCGTMLSFCSTK-YVECPLCKSKRSAKEINGREISYTVTAEEIRKQLGISLIGE 67
           D  FC+ CG++L     +  V C  C    + ++  G+ +  +V   ++   + +S+   
Sbjct: 16  DLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75

Query: 68  EKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 76  PECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]
BLAST of MELO3C011355.2 vs. Swiss-Prot
Match: sp|Q1XHV8|RPA12_PANTR (DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=ZNRD1 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-10
Identity = 37/110 (33.64%), Postives = 60/110 (54.55%), Query Frame = 0 

Query: 8   DFLFCNLCGTMLSFCSTK-YVECPLCKSKRSAKEINGREISYTVTAEEIRKQLGISLIGE 67
           D  FC+ CG++L     +  V C  C    + ++  G+ +  +V   ++   + +S+   
Sbjct: 16  DLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75

Query: 68  EKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 76  PECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]
BLAST of MELO3C011355.2 vs. Swiss-Prot
Match: sp|Q6MFY5|RPA12_RAT (DNA-directed RNA polymerase I subunit RPA12 OS=Rattus norvegicus OX=10116 GN=Znrd1 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.8e-10
Identity = 37/110 (33.64%), Postives = 58/110 (52.73%), Query Frame = 0 

Query: 8   DFLFCNLCGTMLSFCSTK-YVECPLCKSKRSAKEINGREISYTVTAEEIRKQLGISLIGE 67
           D  FC  CG++L     +  V CP C      ++  G+ +  +V   ++   + +S+   
Sbjct: 13  DLDFCPDCGSVLPLPGVQDTVICPRCGFSIDVRDFGGKVVKTSVVFNKLGTVIPMSVDEG 72

Query: 68  EKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            + Q     RRC +CG++   + +RQMRSADEGQT FYTC  C  Q +E+
Sbjct: 73  PESQGPVVDRRCSRCGHEGMAYYTRQMRSADEGQTVFYTCINCKFQEKED 122

[Close]
BLAST of MELO3C011355.2 vs. TrEMBL
Match: tr|A0A1S3BBZ4|A0A1S3BBZ4_CUCME (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 4.2e-61
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of MELO3C011355.2 vs. TrEMBL
Match: tr|A0A0A0LKC4|A0A0A0LKC4_CUCSA (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.3e-58
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSFCSTKYVECP CKS+RSAKEI GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLI EEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of MELO3C011355.2 vs. TrEMBL
Match: tr|B3FNK6|B3FNK6_CUCSA (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.1e-52
Identity = 105/116 (90.52%), Postives = 108/116 (93.10%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNL GTMLSFCSTKYVECP CKS+RSAKEI GREISYTVTAEEI+KQLG
Sbjct: 1   MAYSRGHDFLFCNLGGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIKKQLG 60

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLI E  MQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTC+KC  QTREN
Sbjct: 61  ISLIDENNMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCSKCLPQTREN 116

[Close]
BLAST of MELO3C011355.2 vs. TrEMBL
Match: tr|A0A1S2YYN8|A0A1S2YYN8_CICAR (DNA-directed RNA polymerase subunit OS=Cicer arietinum OX=3827 GN=LOC101496606 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.5e-39
Identity = 78/116 (67.24%), Postives = 99/116 (85.34%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           M+YSRG DFLFCNLCGTML+  ST+Y +CPLCK+K++ K I G+EISYT++AE+IR++LG
Sbjct: 1   MSYSRGRDFLFCNLCGTMLAVPSTEYAQCPLCKTKQNIKHIKGKEISYTISAEDIRRELG 60

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           I LI E+K+QL+K  + CEKCG+ EA F +RQMRSADEGQTTFYTCT+C HQ +EN
Sbjct: 61  IDLIEEQKVQLSKVNKTCEKCGHGEATFYTRQMRSADEGQTTFYTCTRCGHQFQEN 116

[Close]
BLAST of MELO3C011355.2 vs. TrEMBL
Match: tr|A0A1S2Y9R1|A0A1S2Y9R1_CICAR (DNA-directed RNA polymerase subunit OS=Cicer arietinum OX=3827 GN=LOC101500974 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.9e-38
Identity = 75/116 (64.66%), Postives = 100/116 (86.21%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           M+YSRG DFLFC+LCGTML+  ST+Y +CPLCK++++ ++I G+EISYT++AE+IR++LG
Sbjct: 1   MSYSRGRDFLFCHLCGTMLAVPSTEYAQCPLCKTRKNIRDIKGKEISYTISAEDIRRELG 60

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           I LI E+K+QL+K  + CEKCG+ EA F +RQMRSADEGQTTFYTCT+C HQ +EN
Sbjct: 61  IDLIEEQKVQLSKVNKTCEKCGHGEATFYTRQMRSADEGQTTFYTCTRCGHQFQEN 116

The following BLAST results are available for this feature:
BLAST of MELO3C011355.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008445334.16.4e-61100.00PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_0... [more]
XP_004143007.15.0e-5896.55PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Cucumis sativus] >XP_004... [more]
XP_023546814.13.3e-5795.69DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo][more]
XP_022144336.19.5e-5794.83DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_02214... [more]
XP_022962626.12.1e-5694.83DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata] >XP_022962... [more]
BLAST of MELO3C011355.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G25940.19.8e-3256.78TFIIB zinc-binding protein[more]
AT1G20065.21.7e-1260.38FUNCTIONS IN: molecular_function unknown[more]
AT1G01210.11.3e-0730.70DNA-directed RNA polymerase, subunit M, archaeal[more]
AT4G07950.11.3e-0730.70DNA-directed RNA polymerase, subunit M, archaeal[more]
BLAST of MELO3C011355.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q1RMP0|RPA12_BOVIN1.2e-1033.64DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=ZNRD1 PE=2 ... [more]
sp|Q5TM50|RPA12_MACMU1.2e-1033.64DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=ZNRD1 P... [more]
sp|Q9P1U0|RPA12_HUMAN2.0e-1033.64DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=ZNRD1 PE=... [more]
sp|Q1XHV8|RPA12_PANTR2.0e-1033.64DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=ZNRD1 ... [more]
sp|Q6MFY5|RPA12_RAT7.8e-1033.64DNA-directed RNA polymerase I subunit RPA12 OS=Rattus norvegicus OX=10116 GN=Znr... [more]
BLAST of MELO3C011355.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BBZ4|A0A1S3BBZ4_CUCME4.2e-61100.00DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3... [more]
tr|A0A0A0LKC4|A0A0A0LKC4_CUCSA3.3e-5896.55DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 P... [more]
tr|B3FNK6|B3FNK6_CUCSA2.1e-5290.52DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 PE=2 SV=1[more]
tr|A0A1S2YYN8|A0A1S2YYN8_CICAR3.5e-3967.24DNA-directed RNA polymerase subunit OS=Cicer arietinum OX=3827 GN=LOC101496606 P... [more]
tr|A0A1S2Y9R1|A0A1S2Y9R1_CICAR2.9e-3864.66DNA-directed RNA polymerase subunit OS=Cicer arietinum OX=3827 GN=LOC101500974 P... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006379mRNA cleavage
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR034004Zn_ribbon_RPA12_C
IPR012164Rpa12/Rpb9/Rpc10/TFS
IPR001222Znf_TFIIS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006379 mRNA cleavage
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
cellular_component GO:0005730 nucleolus
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C011355.2.1MELO3C011355.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 76..115
e-value: 3.7E-12
score: 56.4
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 77..112
e-value: 7.8E-16
score: 57.5
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 74..114
score: 12.826
NoneNo IPR availableGENE3DG3DSA:2.20.25.10coord: 63..116
e-value: 3.7E-18
score: 66.5
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 5..116
NoneNo IPR availablePANTHERPTHR11239:SF14DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12coord: 5..116
NoneNo IPR availableSUPERFAMILYSSF57783Zinc beta-ribboncoord: 56..116
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 9..116
e-value: 5.9E-26
score: 89.1
IPR034004Pol I subunit A12, C-terminal zinc ribbonCDDcd10507Zn-ribbon_RPA12coord: 76..116
e-value: 2.02354E-19
score: 75.3172