MELO3C011187.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C011187.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMethionyl-tRNA synthetase
Locationchr03 : 28008581 .. 28009286 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTTTCCCAAAACCAGACTTTTCATTCATTCAAACCCATTACAAAACAGACAAACGAATTAGCAAAAAGAATCCCTCAGCCAGAGAATTTAAGAAGAAAAGCAAGAACCTAAAGAAGGAGAAGAAGAAGATGTGTTTGGTGTTCGTGTGCGATGAGGATCAAAGGGTTTTGTCTAGGCAACCAGCTCCAGGGGCATGCCCCTTCTGTGGAGGTATGATCCAAGCCACTGACGTTGAAAGCCAATGGAGGTTCTGTTTCGTTCCTCTTTACTGGAAAACCAAACGCAAGTTCTATTGCACTATGTGCACTAGGCAACTCGTTATGCAGTAGAAAAAACACCGTTACTTTATATAATTGTTGTTTTTTTCCCATGATCTGTGAAGTTTTGAGAGGAGGGTTGACCTAATTTTATCTTTGTTCTGTGAATTTGATGTAAAATATATACTGTATGAGAAATAGAGATATTCATATACTTACCTTGATTGCATGAAATCTTTTGCCTTTCTTCTCCCACGTTTCTCTTTTATGATTATAAGCTACTTAGTGTTTGCCCCACGATCTCTTTATCTGCAGAAATCGTTTGTAATTCTGGGTGTCCTCATAAAAGTATGATCATGCGTATTTAACATGAACTAGAAGAGGAACGTAAAAGAATTAGCAACCCTTTTAAAGTTGAGTTCAGGAGAGATTCTTTTTTGGGTGGGG

mRNA sequence

AACTTTCCCAAAACCAGACTTTTCATTCATTCAAACCCATTACAAAACAGACAAACGAATTAGCAAAAAGAATCCCTCAGCCAGAGAATTTAAGAAGAAAAGCAAGAACCTAAAGAAGGAGAAGAAGAAGATGTGTTTGGTGTTCGTGTGCGATGAGGATCAAAGGGTTTTGTCTAGGCAACCAGCTCCAGGGGCATGCCCCTTCTGTGGAGGTATGATCCAAGCCACTGACGTTGAAAGCCAATGGAGGTTCTGTTTCGTTCCTCTTTACTGGAAAACCAAACGCAAGTTCTATTGCACTATGTGCACTAGGCAACTCGTTATGCAGTAGAAAAAACACCGTTACTTTATATAATTGTTGTTTTTTTCCCATGATCTGTGAAGTTTTGAGAGGAGGGTTGACCTAATTTTATCTTTGTTCTGTGAATTTGATGTAAAATATATACTGTATGAGAAATAGAGATATTCATATACTTACCTTGATTGCATGAAATCTTTTGCCTTTCTTCTCCCACGTTTCTCTTTTATGATTATAAGCTACTTAGTGTTTGCCCCACGATCTCTTTATCTGCAGAAATCGTTTGTAATTCTGGGTGTCCTCATAAAAGTATGATCATGCGTATTTAACATGAACTAGAAGAGGAACGTAAAAGAATTAGCAACCCTTTTAAAGTTGAGTTCAGGAGAGATTCTTTTTTGGGTGGGG

Coding sequence (CDS)

ACTTTCCCAAAACCAGACTTTTCATTCATTCAAACCCATTACAAAACAGACAAACGAATTAGCAAAAAGAATCCCTCAGCCAGAGAATTTAAGAAGAAAAGCAAGAACCTAAAGAAGGAGAAGAAGAAGATGTGTTTGGTGTTCGTGTGCGATGAGGATCAAAGGGTTTTGTCTAGGCAACCAGCTCCAGGGGCATGCCCCTTCTGTGGAGGTATGATCCAAGCCACTGACGTTGAAAGCCAATGGAGGTTCTGTTTCGTTCCTCTTTACTGGAAAACCAAACGCAAGTTCTATTGCACTATGTGCACTAGGCAACTCGTTATGCAGTAG

Protein sequence

TFPKPDFSFIQTHYKTDKRISKKNPSAREFKKKSKNLKKEKKKMCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCTRQLVMQ
BLAST of MELO3C011187.2 vs. NCBI nr
Match: XP_008445081.1 (PREDICTED: uncharacterized protein LOC103488227 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 3.1e-33
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 44  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 103
           MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT
Sbjct: 1   MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 60

Query: 104 RQLVMQ 110
           RQLVMQ
Sbjct: 61  RQLVMQ 66

BLAST of MELO3C011187.2 vs. NCBI nr
Match: XP_004138769.1 (PREDICTED: uncharacterized protein LOC101206986 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 9.0e-33
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0

Query: 44  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 103
           MCLVFVCDEDQRVLSRQPAPG CPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT
Sbjct: 1   MCLVFVCDEDQRVLSRQPAPGVCPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 60

Query: 104 RQLVMQ 110
           RQLVMQ
Sbjct: 61  RQLVMQ 66

BLAST of MELO3C011187.2 vs. NCBI nr
Match: XP_022962063.1 (uncharacterized protein LOC111462635 [Cucurbita moschata] >XP_022996793.1 uncharacterized protein LOC111491925 [Cucurbita maxima] >XP_023546190.1 uncharacterized protein LOC111805366 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.9 bits (372), Expect = 2.0e-32
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 44  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 103
           MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCF+PLYWKTKRKFYCTMCT
Sbjct: 1   MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60

Query: 104 RQLVMQ 110
           RQLV+Q
Sbjct: 61  RQLVIQ 66

BLAST of MELO3C011187.2 vs. NCBI nr
Match: XP_015868421.1 (uncharacterized protein LOC107405842 [Ziziphus jujuba])

HSP 1 Score: 137.5 bits (345), Expect = 2.7e-29
Identity = 56/66 (84.85%), Postives = 65/66 (98.48%), Query Frame = 0

Query: 44  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 103
           MCLVFVCDED+RV+SRQPAPGACP+CGGM+QA DVESQWRFCF+PLYWKTKRKFYC++CT
Sbjct: 1   MCLVFVCDEDERVVSRQPAPGACPYCGGMVQAMDVESQWRFCFLPLYWKTKRKFYCSLCT 60

Query: 104 RQLVMQ 110
           R+LV+Q
Sbjct: 61  RRLVVQ 66

BLAST of MELO3C011187.2 vs. NCBI nr
Match: XP_008378155.1 (PREDICTED: uncharacterized protein LOC103441232 [Malus domestica] >XP_008347650.1 PREDICTED: uncharacterized protein LOC103410760 [Malus domestica])

HSP 1 Score: 134.0 bits (336), Expect = 3.0e-28
Identity = 54/66 (81.82%), Postives = 64/66 (96.97%), Query Frame = 0

Query: 44  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 103
           MCLVFVCDE++RVLSRQPAPGACP+CGGM+QA DVES WRFCF+PLYW+TKRKFYC++CT
Sbjct: 1   MCLVFVCDEEERVLSRQPAPGACPYCGGMVQAMDVESNWRFCFLPLYWRTKRKFYCSLCT 60

Query: 104 RQLVMQ 110
           R+LV+Q
Sbjct: 61  RKLVVQ 66

BLAST of MELO3C011187.2 vs. TAIR10
Match: AT5G10695.1 (unknown protein)

HSP 1 Score: 100.5 bits (249), Expect = 6.6e-22
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 44  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 103
           MCLVFVCD+D+RV+ R  APGACP+CGG +Q  DV SQWRFCFVPL  K+KR+  C+ C 
Sbjct: 1   MCLVFVCDQDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCG 60

Query: 104 RQLVM 109
           ++L++
Sbjct: 61  KRLIV 65

BLAST of MELO3C011187.2 vs. TAIR10
Match: AT5G57123.1 (unknown protein)

HSP 1 Score: 94.4 bits (233), Expect = 4.8e-20
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 0

Query: 44  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 103
           MCLV +CDE++  L RQ APG+CP+CGG +Q  DVE +W FCFVPL +K KRK+ C+ C 
Sbjct: 1   MCLVCLCDEEETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSCD 60

Query: 104 RQLVM 109
           R+LV+
Sbjct: 61  RRLVL 65

BLAST of MELO3C011187.2 vs. TAIR10
Match: AT4G29905.1 (unknown protein)

HSP 1 Score: 84.7 bits (208), Expect = 3.8e-17
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 0

Query: 44  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 103
           MCL  V  E++  L RQ APG CP+CGG + A D+E++W FCF+PL +K KRK+ C+ C 
Sbjct: 1   MCLEVVYHEEKTELGRQQAPGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSCE 60

Query: 104 RQLVM 109
           R LV+
Sbjct: 61  RHLVL 65

BLAST of MELO3C011187.2 vs. TAIR10
Match: AT1G52855.1 (unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-09
Identity = 21/59 (35.59%), Postives = 35/59 (59.32%), Query Frame = 0

Query: 44  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMC 103
           +C  F+ D+ ++V   +PA G C  CG      D+++  RFCF+P+YW++ R   C+ C
Sbjct: 2   VCFCFLVDQTRKVKRSKPAAGTCSRCGHCASIADMKTSTRFCFIPIYWRSWRAVVCSFC 60

BLAST of MELO3C011187.2 vs. TAIR10
Match: AT3G15534.1 (unknown protein)

HSP 1 Score: 53.5 bits (127), Expect = 9.3e-08
Identity = 19/59 (32.20%), Postives = 34/59 (57.63%), Query Frame = 0

Query: 44  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMC 103
           +C  F+ D+ ++V   +PA G C  CG   +  D+++  RFC +P+Y ++ R   C+ C
Sbjct: 2   VCFCFLVDQKRKVKGSKPAAGTCSRCGRGARVADMKTSTRFCLIPIYCRSWRAIVCSFC 60

BLAST of MELO3C011187.2 vs. TrEMBL
Match: tr|A0A1S3BCK8|A0A1S3BCK8_CUCME (uncharacterized protein LOC103488227 OS=Cucumis melo OX=3656 GN=LOC103488227 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.0e-33
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 44  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 103
           MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT
Sbjct: 1   MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 60

Query: 104 RQLVMQ 110
           RQLVMQ
Sbjct: 61  RQLVMQ 66

BLAST of MELO3C011187.2 vs. TrEMBL
Match: tr|W9SK68|W9SK68_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019841 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.6e-28
Identity = 56/66 (84.85%), Postives = 63/66 (95.45%), Query Frame = 0

Query: 44  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 103
           MCLVFVCDED+RVLSRQ APGACP+CGGMIQA DVESQWRFCF+PLYWKTKRKFYC++C 
Sbjct: 1   MCLVFVCDEDERVLSRQVAPGACPYCGGMIQAMDVESQWRFCFLPLYWKTKRKFYCSVCA 60

Query: 104 RQLVMQ 110
           R+LV+Q
Sbjct: 61  RRLVLQ 66

BLAST of MELO3C011187.2 vs. TrEMBL
Match: tr|A0A2P5G1E3|A0A2P5G1E3_9ROSA (Methionyl-tRNA synthetase OS=Trema orientalis OX=63057 GN=TorRG33x02_001450 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.3e-27
Identity = 53/66 (80.30%), Postives = 63/66 (95.45%), Query Frame = 0

Query: 44  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 103
           MCLVFVCDED+RV+SRQ APG CP+CGGM+QA DVESQWRFCF+PLYWKT+RKFYCT+C+
Sbjct: 1   MCLVFVCDEDERVVSRQAAPGTCPYCGGMVQAMDVESQWRFCFLPLYWKTRRKFYCTICS 60

Query: 104 RQLVMQ 110
           R+LV+Q
Sbjct: 61  RRLVVQ 66

BLAST of MELO3C011187.2 vs. TrEMBL
Match: tr|A0A2P5DIF1|A0A2P5DIF1_PARAD (Methionyl-tRNA synthetase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_061930 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.3e-27
Identity = 53/66 (80.30%), Postives = 63/66 (95.45%), Query Frame = 0

Query: 44  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 103
           MCLVFVCDED+RV+SRQ APG CP+CGGM+QA DVESQWRFCF+PLYWKT+RKFYCT+C+
Sbjct: 1   MCLVFVCDEDERVVSRQAAPGTCPYCGGMVQAMDVESQWRFCFLPLYWKTRRKFYCTICS 60

Query: 104 RQLVMQ 110
           R+LV+Q
Sbjct: 61  RRLVVQ 66

BLAST of MELO3C011187.2 vs. TrEMBL
Match: tr|A0A2I4GP06|A0A2I4GP06_9ROSI (uncharacterized protein LOC109009566 OS=Juglans regia OX=51240 GN=LOC109009566 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.2e-27
Identity = 55/66 (83.33%), Postives = 63/66 (95.45%), Query Frame = 0

Query: 44  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 103
           MCLVFVCDED+RV+SRQPA GACP+CGGMIQA DV+SQWRFCFVPLY+KTKRKFYCT+C 
Sbjct: 1   MCLVFVCDEDERVMSRQPAQGACPYCGGMIQAMDVQSQWRFCFVPLYFKTKRKFYCTICA 60

Query: 104 RQLVMQ 110
           R+LV+Q
Sbjct: 61  RRLVIQ 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008445081.13.1e-33100.00PREDICTED: uncharacterized protein LOC103488227 [Cucumis melo][more]
XP_004138769.19.0e-3398.48PREDICTED: uncharacterized protein LOC101206986 [Cucumis sativus][more]
XP_022962063.12.0e-3296.97uncharacterized protein LOC111462635 [Cucurbita moschata] >XP_022996793.1 unchar... [more]
XP_015868421.12.7e-2984.85uncharacterized protein LOC107405842 [Ziziphus jujuba][more]
XP_008378155.13.0e-2881.82PREDICTED: uncharacterized protein LOC103441232 [Malus domestica] >XP_008347650.... [more]
Match NameE-valueIdentityDescription
AT5G10695.16.6e-2261.54unknown protein[more]
AT5G57123.14.8e-2058.46unknown protein[more]
AT4G29905.13.8e-1752.31unknown protein[more]
AT1G52855.11.0e-0935.59unknown protein[more]
AT3G15534.19.3e-0832.20unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3BCK8|A0A1S3BCK8_CUCME2.0e-33100.00uncharacterized protein LOC103488227 OS=Cucumis melo OX=3656 GN=LOC103488227 PE=... [more]
tr|W9SK68|W9SK68_9ROSA2.6e-2884.85Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019841 PE=4 SV=1[more]
tr|A0A2P5G1E3|A0A2P5G1E3_9ROSA1.3e-2780.30Methionyl-tRNA synthetase OS=Trema orientalis OX=63057 GN=TorRG33x02_001450 PE=4... [more]
tr|A0A2P5DIF1|A0A2P5DIF1_PARAD1.3e-2780.30Methionyl-tRNA synthetase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_061930 ... [more]
tr|A0A2I4GP06|A0A2I4GP06_9ROSI2.2e-2783.33uncharacterized protein LOC109009566 OS=Juglans regia OX=51240 GN=LOC109009566 P... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006418 tRNA aminoacylation for protein translation
cellular_component GO:0005575 cellular_component
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C011187.2.1MELO3C011187.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..38
NoneNo IPR availablePANTHERPTHR33320FAMILY NOT NAMEDcoord: 44..109
NoneNo IPR availablePANTHERPTHR33320:SF9SUBFAMILY NOT NAMEDcoord: 44..109

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C011187.2Cucumber (Gy14) v2cgybmedB101
MELO3C011187.2Cucumber (Gy14) v2cgybmedB166
MELO3C011187.2Cucumber (Gy14) v1cgymedB273
MELO3C011187.2Cucumber (Gy14) v1cgymedB512
MELO3C011187.2Cucurbita maxima (Rimu)cmamedB025
MELO3C011187.2Cucurbita maxima (Rimu)cmamedB173
MELO3C011187.2Cucurbita maxima (Rimu)cmamedB177
MELO3C011187.2Cucurbita maxima (Rimu)cmamedB471
MELO3C011187.2Cucurbita moschata (Rifu)cmomedB013
MELO3C011187.2Cucurbita moschata (Rifu)cmomedB164
MELO3C011187.2Cucurbita moschata (Rifu)cmomedB459
MELO3C011187.2Cucurbita moschata (Rifu)cmomedB816
MELO3C011187.2Cucurbita pepo (Zucchini)cpemedB116
MELO3C011187.2Cucurbita pepo (Zucchini)cpemedB610
MELO3C011187.2Cucurbita pepo (Zucchini)cpemedB854
MELO3C011187.2Cucurbita pepo (Zucchini)cpemedB893
MELO3C011187.2Cucurbita pepo (Zucchini)cpemedB897
MELO3C011187.2Wild cucumber (PI 183967)cpimedB114
MELO3C011187.2Wild cucumber (PI 183967)cpimedB186
MELO3C011187.2Cucumber (Chinese Long) v2cumedB114
MELO3C011187.2Cucumber (Chinese Long) v2cumedB186
MELO3C011187.2Melon (DHL92) v3.6.1medmedB120
MELO3C011187.2Bottle gourd (USVL1VR-Ls)lsimedB312
MELO3C011187.2Watermelon (Charleston Gray)medwcgB292
MELO3C011187.2Silver-seed gourdcarmedB0562
MELO3C011187.2Silver-seed gourdcarmedB0638
MELO3C011187.2Silver-seed gourdcarmedB0960
MELO3C011187.2Silver-seed gourdcarmedB0961
MELO3C011187.2Cucumber (Chinese Long) v3cucmedB118
MELO3C011187.2Cucumber (Chinese Long) v3cucmedB190
MELO3C011187.2Wax gourdmedwgoB322
MELO3C011187.2Wax gourdmedwgoB366