Lsi08G011260 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi08G011260
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionMethionyl-tRNA synthetase
Locationchr08 : 19893688 .. 19895830 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAATGTAATACAAATAAAATAATTTCACAATTTATTTCACGTATACAAGTGTAAAATGTTTAATTATTAATTTACATATGTATCTTTAATATATATATATATATTTTTTTTTACATTTTAAAATATATCCATCAATATCAATATTTTTATGTCAATAAATTTGAGACTTTAACATTTTCATTGACATAAACATTTTAAACCTTGAATTTCAATATTTTTTCCTTTAAAAACAAAACAATCACAAATGACTTAGGTCCCTATATTTACAATTTTGATTCATTTTGGCTCTTATATTTCCAAAATATCTATTTTAGTCCTTATATTTACAGCAATCGTTCATTTAATTCTTGGACTTTTGGAATATTTATTTTAGTTTCTCTACTTTTAAAAAATAACCATTATGGTCCTTTCATTTTTATATTATAATATATTTAGATCAAAATTATATCATGACACTTTATTCACTAAATCATTTAAAACTTAGCCATAAATCTATACTAAAGAGGTTTCATTGTTTGTACTAGGTGATAGTCTGTTCGATTTTGTCCGTTTTGAGGTCAACTAAGAATCAAACAAAATCAATTGGAGATATCCAATAAACAACAAAACCATTGGATTGATTTTTATTTGGTTCGATTTATTATCAGTTTGATTCTCAATTTGGTTCTCGATTTTGACATTTTTTTTCTTTCAAATTTTAATTTATATTTCTAATATTTTTTTGAATTAGTCATTTTTGCTAATTTTAAATTAAAATGGGGTCTATTTCTTTTCTTATAGATTGAAATTAGACATTTTTTTGACACTTTCTAAATAAAAAACACACACTCCACAATAATTAGTATTTTTTCTAAAACAATAAATATATATGCACCATAATAATTAAAATACTAAAAAATATCTAATGTTAGAGTTTATTTTTAAGGGTATATATACCATGACTTCAATTTTGATTAGTTTTTCCAATCAAAATCCAATCCAAATCAATACATATGTCTAATTTTATACTAAAAAAATCAAACCAAACCAGTTGATCGACTTAGATTAGTTTGGTTTTTCAATTTTTAGTTGCACTCCTAGTTTGTACAACTTATGTTAAAACTTTGCGAATCAAAATCAAAATTGTCAAATTTTAAAATATACAAACTAAAATGAATAAAATAAAGAGTATAAAATCAAAACAAACATTTTAAAAGTATAAAAACCACACAATTAGAGTATGGAACCAAAAATTTTAAAAGTAAGTAAATAAATAAAAATAATAATAATAATAATAAGCAACAACTAATTTTGAACCACAACCAAAGCATCACTCTTAGATTCTCATGACTACCTACGGTTTGAGAGGTTGAAATGTAATAAAGATTATTGAAAATCAGATGAGTGTTGGAATGTGTAAGGTATCGAAGACAGAATAGAAATGAAATCGTGACATGTGAAAGTGGTGGGAGAGAATGTTTGATTAAAAACTGTCGAAATGGAATGAGTTTAATATTACAAATTCGGTCCAAAATACTCCATCCAAACATAGATTTTAGATTACATTACAATCTAAACCCATTTCAATATGGTCCCAAACCGCTAATGGGAAGGAAGGATAAATTCGATTTGACAAAGAAGCCAAAAGGATTGGTCAAAGTCCAAAGTCAACAGTCCACGTATTATTATTGTCAAAGACAAGGGTCAACTTTCTTCGGAACGCAATAATTTTCTTCGCCTAGTTTCGAGAATAAGTCAGAAACTTCTAGAGATACACGGTTCTCCATATCCCCTCAAATTCCACGAAACTTCCTTCTCTTTCTCTATAAAAACATCAAAGCTCACAACTTCCCTGATCCTAGACTTTTCATCCAAAACCCAGAAAAGAAAACAACAAACAACAGCAGAAAGAAATCCCTCAGCCAGGAAAGCAAGAAGAACCTAAAGGAAGAGAAAAATATGTGTTTGGTATTTGTTTGCGATGAAGATCAGAGAGTATTATCAAGGCAACCAGCTCCAGGGGCATGCCCCTTCTGCGGAGGTATTATCCAAGCCACCGACATTGAAAGCCAATGGAGGTTCTGTTTCCTCCCTCTTTACTGGAAAACCAAACGAAAGTTCTATTGCACTATGTGCACCAGACAACTCGTTATGAAGTAG

mRNA sequence

ATGTTAATTTTCGAGAATAAGTCAGAAACTTCTAGAGATACACGGTTCTCCATATCCCCTCAAATTCCACGAAACTTCCTTCTCTTTCTCTATAAAAACATCAAAGCTCACAACTTCCCTGATCCTAGACTTTTCATCCAAAACCCAGAAAAGAAAACAACAAACAACAGCAGAAAGAAATCCCTCAGCCAGGAAAGCAAGAAGAACCTAAAGGAAGAGAAAAATATGTGTTTGGTATTTGTTTGCGATGAAGATCAGAGAGTATTATCAAGGCAACCAGCTCCAGGGGCATGCCCCTTCTGCGGAGGTATTATCCAAGCCACCGACATTGAAAGCCAATGGAGGTTCTGTTTCCTCCCTCTTTACTGGAAAACCAAACGAAAGTTCTATTGCACTATGTGCACCAGACAACTCGTTATGAAGTAG

Coding sequence (CDS)

ATGTTAATTTTCGAGAATAAGTCAGAAACTTCTAGAGATACACGGTTCTCCATATCCCCTCAAATTCCACGAAACTTCCTTCTCTTTCTCTATAAAAACATCAAAGCTCACAACTTCCCTGATCCTAGACTTTTCATCCAAAACCCAGAAAAGAAAACAACAAACAACAGCAGAAAGAAATCCCTCAGCCAGGAAAGCAAGAAGAACCTAAAGGAAGAGAAAAATATGTGTTTGGTATTTGTTTGCGATGAAGATCAGAGAGTATTATCAAGGCAACCAGCTCCAGGGGCATGCCCCTTCTGCGGAGGTATTATCCAAGCCACCGACATTGAAAGCCAATGGAGGTTCTGTTTCCTCCCTCTTTACTGGAAAACCAAACGAAAGTTCTATTGCACTATGTGCACCAGACAACTCGTTATGAAGTAG

Protein sequence

MLIFENKSETSRDTRFSISPQIPRNFLLFLYKNIKAHNFPDPRLFIQNPEKKTTNNSRKKSLSQESKKNLKEEKNMCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCTRQLVMK
BLAST of Lsi08G011260 vs. TrEMBL
Match: W9SK68_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019841 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.9e-28
Identity = 54/66 (81.82%), Postives = 63/66 (95.45%), Query Frame = 1

Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCDED+RVLSRQ APGACP+CGG+IQA D+ESQWRFCFLPLYWKTKRKFYC++C 
Sbjct: 1   MCLVFVCDEDERVLSRQVAPGACPYCGGMIQAMDVESQWRFCFLPLYWKTKRKFYCSVCA 60

Query: 136 RQLVMK 142
           R+LV++
Sbjct: 61  RRLVLQ 66

BLAST of Lsi08G011260 vs. TrEMBL
Match: A0A0D2TEV4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G067200 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.2e-26
Identity = 50/65 (76.92%), Postives = 62/65 (95.38%), Query Frame = 1

Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCDED+RV+SRQPAPGACP+CGG++QA D+ESQWRFCFLPLY+KTKR++YC+ C 
Sbjct: 1   MCLVFVCDEDERVISRQPAPGACPYCGGMVQAMDVESQWRFCFLPLYFKTKRRYYCSFCA 60

Query: 136 RQLVM 141
           R+LV+
Sbjct: 61  RRLVV 65

BLAST of Lsi08G011260 vs. TrEMBL
Match: B9T1K2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0216640 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.8e-26
Identity = 49/66 (74.24%), Postives = 64/66 (96.97%), Query Frame = 1

Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCDE++RV++RQPAPGACP+CGG++QA D+ESQWRFCFLPLY+KTK++FYC++C 
Sbjct: 1   MCLVFVCDEEERVVARQPAPGACPYCGGMVQAMDVESQWRFCFLPLYFKTKKRFYCSVCA 60

Query: 136 RQLVMK 142
           R+LVM+
Sbjct: 61  RRLVMQ 66

BLAST of Lsi08G011260 vs. TrEMBL
Match: A0A061GHB3_THECC (Methionyl-tRNA synthetase OS=Theobroma cacao GN=TCM_036826 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.4e-26
Identity = 49/66 (74.24%), Postives = 63/66 (95.45%), Query Frame = 1

Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCDED+RV++RQPA GACP+CGG++QA D+ESQWRFCFLPLY+KTKRK+YC++C 
Sbjct: 1   MCLVFVCDEDERVIARQPAAGACPYCGGMVQAMDVESQWRFCFLPLYFKTKRKYYCSLCA 60

Query: 136 RQLVMK 142
           R+LV++
Sbjct: 61  RRLVIQ 66

BLAST of Lsi08G011260 vs. TrEMBL
Match: A0A0B2PRF2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_017872 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.9e-25
Identity = 51/66 (77.27%), Postives = 61/66 (92.42%), Query Frame = 1

Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVC ED+RV+SRQPAPGACP+C G+IQA D+ESQW FCFLPLY KTKR++YCTMCT
Sbjct: 1   MCLVFVCGEDERVVSRQPAPGACPYCRGMIQAMDVESQWNFCFLPLYSKTKRRYYCTMCT 60

Query: 136 RQLVMK 142
           R+LV++
Sbjct: 61  RKLVLQ 66

BLAST of Lsi08G011260 vs. TAIR10
Match: AT5G10695.1 (AT5G10695.1 unknown protein)

HSP 1 Score: 99.4 bits (246), Expect = 1.9e-21
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 1

Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCD+D+RV+ R  APGACP+CGG +Q  D+ SQWRFCF+PL  K+KR+  C+ C 
Sbjct: 1   MCLVFVCDQDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCG 60

Query: 136 RQLVM 141
           ++L++
Sbjct: 61  KRLIV 65

BLAST of Lsi08G011260 vs. TAIR10
Match: AT5G57123.1 (AT5G57123.1 unknown protein)

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-19
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 1

Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLV +CDE++  L RQ APG+CP+CGG +Q  D+E +W FCF+PL +K KRK+ C+ C 
Sbjct: 1   MCLVCLCDEEETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSCD 60

Query: 136 RQLVM 141
           R+LV+
Sbjct: 61  RRLVL 65

BLAST of Lsi08G011260 vs. TAIR10
Match: AT4G29905.1 (AT4G29905.1 unknown protein)

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-17
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1

Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCL  V  E++  L RQ APG CP+CGG + A DIE++W FCFLPL +K KRK+ C+ C 
Sbjct: 1   MCLEVVYHEEKTELGRQQAPGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSCE 60

Query: 136 RQLVM 141
           R LV+
Sbjct: 61  RHLVL 65

BLAST of Lsi08G011260 vs. TAIR10
Match: AT1G52855.1 (AT1G52855.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-09
Identity = 21/59 (35.59%), Postives = 35/59 (59.32%), Query Frame = 1

Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMC 135
           +C  F+ D+ ++V   +PA G C  CG      D+++  RFCF+P+YW++ R   C+ C
Sbjct: 2   VCFCFLVDQTRKVKRSKPAAGTCSRCGHCASIADMKTSTRFCFIPIYWRSWRAVVCSFC 60

BLAST of Lsi08G011260 vs. TAIR10
Match: AT3G15534.1 (AT3G15534.1 unknown protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.1e-07
Identity = 19/59 (32.20%), Postives = 34/59 (57.63%), Query Frame = 1

Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMC 135
           +C  F+ D+ ++V   +PA G C  CG   +  D+++  RFC +P+Y ++ R   C+ C
Sbjct: 2   VCFCFLVDQKRKVKGSKPAAGTCSRCGRGARVADMKTSTRFCLIPIYCRSWRAIVCSFC 60

BLAST of Lsi08G011260 vs. NCBI nr
Match: gi|659088627|ref|XP_008445081.1| (PREDICTED: uncharacterized protein LOC103488227 [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 3.9e-32
Identity = 62/66 (93.94%), Postives = 66/66 (100.00%), Query Frame = 1

Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCDEDQRVLSRQPAPGACPFCGG+IQATD+ESQWRFCF+PLYWKTKRKFYCTMCT
Sbjct: 1   MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 60

Query: 136 RQLVMK 142
           RQLVM+
Sbjct: 61  RQLVMQ 66

BLAST of Lsi08G011260 vs. NCBI nr
Match: gi|449441998|ref|XP_004138769.1| (PREDICTED: uncharacterized protein LOC101206986 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-31
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 1

Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCDEDQRVLSRQPAPG CPFCGG+IQATD+ESQWRFCF+PLYWKTKRKFYCTMCT
Sbjct: 1   MCLVFVCDEDQRVLSRQPAPGVCPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 60

Query: 136 RQLVMK 142
           RQLVM+
Sbjct: 61  RQLVMQ 66

BLAST of Lsi08G011260 vs. NCBI nr
Match: gi|1009174591|ref|XP_015868421.1| (PREDICTED: uncharacterized protein LOC107405842 [Ziziphus jujuba])

HSP 1 Score: 135.6 bits (340), Expect = 6.8e-29
Identity = 54/66 (81.82%), Postives = 65/66 (98.48%), Query Frame = 1

Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCDED+RV+SRQPAPGACP+CGG++QA D+ESQWRFCFLPLYWKTKRKFYC++CT
Sbjct: 1   MCLVFVCDEDERVVSRQPAPGACPYCGGMVQAMDVESQWRFCFLPLYWKTKRKFYCSLCT 60

Query: 136 RQLVMK 142
           R+LV++
Sbjct: 61  RRLVVQ 66

BLAST of Lsi08G011260 vs. NCBI nr
Match: gi|657972741|ref|XP_008378155.1| (PREDICTED: uncharacterized protein LOC103441232 [Malus domestica])

HSP 1 Score: 132.1 bits (331), Expect = 7.6e-28
Identity = 52/66 (78.79%), Postives = 64/66 (96.97%), Query Frame = 1

Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCDE++RVLSRQPAPGACP+CGG++QA D+ES WRFCFLPLYW+TKRKFYC++CT
Sbjct: 1   MCLVFVCDEEERVLSRQPAPGACPYCGGMVQAMDVESNWRFCFLPLYWRTKRKFYCSLCT 60

Query: 136 RQLVMK 142
           R+LV++
Sbjct: 61  RKLVVQ 66

BLAST of Lsi08G011260 vs. NCBI nr
Match: gi|703158868|ref|XP_010112103.1| (hypothetical protein L484_019841 [Morus notabilis])

HSP 1 Score: 131.7 bits (330), Expect = 9.9e-28
Identity = 54/66 (81.82%), Postives = 63/66 (95.45%), Query Frame = 1

Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCDED+RVLSRQ APGACP+CGG+IQA D+ESQWRFCFLPLYWKTKRKFYC++C 
Sbjct: 1   MCLVFVCDEDERVLSRQVAPGACPYCGGMIQAMDVESQWRFCFLPLYWKTKRKFYCSVCA 60

Query: 136 RQLVMK 142
           R+LV++
Sbjct: 61  RRLVLQ 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
W9SK68_9ROSA6.9e-2881.82Uncharacterized protein OS=Morus notabilis GN=L484_019841 PE=4 SV=1[more]
A0A0D2TEV4_GOSRA2.2e-2676.92Uncharacterized protein OS=Gossypium raimondii GN=B456_009G067200 PE=4 SV=1[more]
B9T1K2_RICCO3.8e-2674.24Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0216640 PE=4 SV=1[more]
A0A061GHB3_THECC8.4e-2674.24Methionyl-tRNA synthetase OS=Theobroma cacao GN=TCM_036826 PE=4 SV=1[more]
A0A0B2PRF2_GLYSO1.9e-2577.27Uncharacterized protein OS=Glycine soja GN=glysoja_017872 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G10695.11.9e-2158.46 unknown protein[more]
AT5G57123.12.3e-1955.38 unknown protein[more]
AT4G29905.12.2e-1755.38 unknown protein[more]
AT1G52855.11.7e-0935.59 unknown protein[more]
AT3G15534.12.1e-0732.20 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659088627|ref|XP_008445081.1|3.9e-3293.94PREDICTED: uncharacterized protein LOC103488227 [Cucumis melo][more]
gi|449441998|ref|XP_004138769.1|1.1e-3192.42PREDICTED: uncharacterized protein LOC101206986 [Cucumis sativus][more]
gi|1009174591|ref|XP_015868421.1|6.8e-2981.82PREDICTED: uncharacterized protein LOC107405842 [Ziziphus jujuba][more]
gi|657972741|ref|XP_008378155.1|7.6e-2878.79PREDICTED: uncharacterized protein LOC103441232 [Malus domestica][more]
gi|703158868|ref|XP_010112103.1|9.9e-2881.82hypothetical protein L484_019841 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006418 tRNA aminoacylation for protein translation
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G011260.1Lsi08G011260.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33320FAMILY NOT NAMEDcoord: 68..140
score: 5.8
NoneNo IPR availablePANTHERPTHR33320:SF9SUBFAMILY NOT NAMEDcoord: 68..140
score: 5.8

The following gene(s) are paralogous to this gene:

None