CmoCh12G002480 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G002480
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMethionyl-tRNA synthetase
LocationCmo_Chr12 : 1615238 .. 1615702 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTTGGTGTTTGTGTGCGATGAGGACCAGAGGATCCTGTCGAGGCAGCCAGCTCCGGGGGCATGTCCCTACTGCGGAGGCACGATCCAGGCCACCGACGTAGAAACCAAATGGAGGTTCTGTTTCCTCCCTCTCTACTGGAAAAGTAAACGCAAGTTCAATTGCAACAGCTGCAACAGAGAGCTTGTTATGCAGTAGAAACACTGTTATCTTACAGATTTGTTCTTTTCCATGATCTTTGAAGTTAAGATGGGGGTGACCCATCTTATCTTCGTTTTGAGATTATGATCAGTGTTTGTGTAATAATCTCCTACTATCTTAAAAATAGATATACTGATATACATACCTTGAGATTGCTAGAGAATTTTGACCTTTCTCCACGTCTCTTTTATGATTACGAACTACTGTGTATGCTGCATGATCTCTATAGAAATAGATTGCAGTTCTGGATTCAAAACGTAG

mRNA sequence

ATGTGTTTGGTGTTTGTGTGCGATGAGGACCAGAGGATCCTGTCGAGGCAGCCAGCTCCGGGGGCATGTCCCTACTGCGGAGGCACGATCCAGGCCACCGACGTAGAAACCAAATGGAGGTTCTGTTTCCTCCCTCTCTACTGGAAAAGTAAACGCAAGTTCAATTGCAACAGCTGCAACAGAGAGCTTGTTATGCATTCTGGATTCAAAACGTAG

Coding sequence (CDS)

ATGTGTTTGGTGTTTGTGTGCGATGAGGACCAGAGGATCCTGTCGAGGCAGCCAGCTCCGGGGGCATGTCCCTACTGCGGAGGCACGATCCAGGCCACCGACGTAGAAACCAAATGGAGGTTCTGTTTCCTCCCTCTCTACTGGAAAAGTAAACGCAAGTTCAATTGCAACAGCTGCAACAGAGAGCTTGTTATGCATTCTGGATTCAAAACGTAG
Homology
[Close]
BLAST of CmoCh12G002480 vs. TrEMBL
Match: W9SK68_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019841 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.5e-26
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 1 

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLVFVCDED+R+LSRQ APGACPYCGG IQA DVE++WRFCFLPLYWK+KRKF C+ C 
Sbjct: 1  MCLVFVCDEDERVLSRQVAPGACPYCGGMIQAMDVESQWRFCFLPLYWKTKRKFYCSVCA 60

Query: 61 RELVM 66
          R LV+
Sbjct: 61 RRLVL 65

[Close]
BLAST of CmoCh12G002480 vs. TrEMBL
Match: A0A0D2TEV4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G067200 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-25
Identity = 48/66 (72.73%), Postives = 60/66 (90.91%), Query Frame = 1 

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLVFVCDED+R++SRQPAPGACPYCGG +QA DVE++WRFCFLPLY+K+KR++ C+ C 
Sbjct: 1  MCLVFVCDEDERVISRQPAPGACPYCGGMVQAMDVESQWRFCFLPLYFKTKRRYYCSFCA 60

Query: 61 RELVMH 67
          R LV+H
Sbjct: 61 RRLVVH 66

[Close]
BLAST of CmoCh12G002480 vs. TrEMBL
Match: B9T1K2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0216640 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.0e-24
Identity = 46/65 (70.77%), Postives = 59/65 (90.77%), Query Frame = 1 

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLVFVCDE++R+++RQPAPGACPYCGG +QA DVE++WRFCFLPLY+K+K++F C+ C 
Sbjct: 1  MCLVFVCDEEERVVARQPAPGACPYCGGMVQAMDVESQWRFCFLPLYFKTKKRFYCSVCA 60

Query: 61 RELVM 66
          R LVM
Sbjct: 61 RRLVM 65

[Close]
BLAST of CmoCh12G002480 vs. TrEMBL
Match: A0A059CQ97_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02015 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 6.8e-24
Identity = 47/67 (70.15%), Postives = 59/67 (88.06%), Query Frame = 1 

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLVFVCDED+++++RQ APGACPYCGG IQA DVE++WRFCFLPLY+++KRKF C+ C 
Sbjct: 1  MCLVFVCDEDEQVVARQAAPGACPYCGGAIQAMDVESQWRFCFLPLYFRTKRKFYCSLCA 60

Query: 61 RELVMHS 68
          R LV+ S
Sbjct: 61 RRLVVQS 67

[Close]
BLAST of CmoCh12G002480 vs. TrEMBL
Match: A0A061GHB3_THECC (Methionyl-tRNA synthetase OS=Theobroma cacao GN=TCM_036826 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 8.8e-24
Identity = 46/65 (70.77%), Postives = 58/65 (89.23%), Query Frame = 1 

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLVFVCDED+R+++RQPA GACPYCGG +QA DVE++WRFCFLPLY+K+KRK+ C+ C 
Sbjct: 1  MCLVFVCDEDERVIARQPAAGACPYCGGMVQAMDVESQWRFCFLPLYFKTKRKYYCSLCA 60

Query: 61 RELVM 66
          R LV+
Sbjct: 61 RRLVI 65

[Close]
BLAST of CmoCh12G002480 vs. TAIR10
Match: AT5G10695.1 (AT5G10695.1 unknown protein)

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-23
Identity = 39/66 (59.09%), Postives = 53/66 (80.30%), Query Frame = 1 

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLVFVCD+D+R++ R  APGACPYCGG +Q  DV ++WRFCF+PL  KSKR+  C++C 
Sbjct: 1  MCLVFVCDQDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCG 60

Query: 61 RELVMH 67
          + L++H
Sbjct: 61 KRLIVH 66

[Close]
BLAST of CmoCh12G002480 vs. TAIR10
Match: AT5G57123.1 (AT5G57123.1 unknown protein)

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-22
Identity = 40/66 (60.61%), Postives = 53/66 (80.30%), Query Frame = 1 

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLV +CDE++  L RQ APG+CPYCGG +Q  DVE KW FCF+PL +K KRK++C+SC+
Sbjct: 1  MCLVCLCDEEETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSCD 60

Query: 61 RELVMH 67
          R LV++
Sbjct: 61 RRLVLY 66

[Close]
BLAST of CmoCh12G002480 vs. TAIR10
Match: AT4G29905.1 (AT4G29905.1 unknown protein)

HSP 1 Score: 96.3 bits (238), Expect = 8.2e-21
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1 

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCL  V  E++  L RQ APG CPYCGG + A D+ETKW FCFLPL +K KRK++C+SC 
Sbjct: 1  MCLEVVYHEEKTELGRQQAPGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSCE 60

Query: 61 RELVMH 67
          R LV++
Sbjct: 61 RHLVLY 66

[Close]
BLAST of CmoCh12G002480 vs. TAIR10
Match: AT1G52855.1 (AT1G52855.1 unknown protein)

HSP 1 Score: 63.2 bits (152), Expect = 7.7e-11
Identity = 23/63 (36.51%), Postives = 36/63 (57.14%), Query Frame = 1 

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          +C  F+ D+ +++   +PA G C  CG      D++T  RFCF+P+YW+S R   C+ C 
Sbjct: 2  VCFCFLVDQTRKVKRSKPAAGTCSRCGHCASIADMKTSTRFCFIPIYWRSWRAVVCSFCG 61

Query: 61 REL 64
            L
Sbjct: 62 SVL 64

[Close]
BLAST of CmoCh12G002480 vs. TAIR10
Match: AT3G15534.1 (AT3G15534.1 unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 5.5e-09
Identity = 21/63 (33.33%), Postives = 35/63 (55.56%), Query Frame = 1 

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          +C  F+ D+ +++   +PA G C  CG   +  D++T  RFC +P+Y +S R   C+ C 
Sbjct: 2  VCFCFLVDQKRKVKGSKPAAGTCSRCGRGARVADMKTSTRFCLIPIYCRSWRAIVCSFCG 61

Query: 61 REL 64
            L
Sbjct: 62 SVL 64

[Close]
BLAST of CmoCh12G002480 vs. NCBI nr
Match: gi|659088627|ref|XP_008445081.1| (PREDICTED: uncharacterized protein LOC103488227 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 6.5e-28
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 1 

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLVFVCDEDQR+LSRQPAPGACP+CGG IQATDVE++WRFCF+PLYWK+KRKF C  C 
Sbjct: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 60

Query: 61 RELVM 66
          R+LVM
Sbjct: 61 RQLVM 65

[Close]
BLAST of CmoCh12G002480 vs. NCBI nr
Match: gi|449441998|ref|XP_004138769.1| (PREDICTED: uncharacterized protein LOC101206986 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.9e-27
Identity = 52/65 (80.00%), Postives = 59/65 (90.77%), Query Frame = 1 

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLVFVCDEDQR+LSRQPAPG CP+CGG IQATDVE++WRFCF+PLYWK+KRKF C  C 
Sbjct: 1  MCLVFVCDEDQRVLSRQPAPGVCPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 60

Query: 61 RELVM 66
          R+LVM
Sbjct: 61 RQLVM 65

[Close]
BLAST of CmoCh12G002480 vs. NCBI nr
Match: gi|1009174591|ref|XP_015868421.1| (PREDICTED: uncharacterized protein LOC107405842 [Ziziphus jujuba])

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-26
Identity = 50/65 (76.92%), Postives = 59/65 (90.77%), Query Frame = 1 

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLVFVCDED+R++SRQPAPGACPYCGG +QA DVE++WRFCFLPLYWK+KRKF C+ C 
Sbjct: 1  MCLVFVCDEDERVVSRQPAPGACPYCGGMVQAMDVESQWRFCFLPLYWKTKRKFYCSLCT 60

Query: 61 RELVM 66
          R LV+
Sbjct: 61 RRLVV 65

[Close]
BLAST of CmoCh12G002480 vs. NCBI nr
Match: gi|764539942|ref|XP_011459028.1| (PREDICTED: uncharacterized protein LOC105349868 [Fragaria vesca subsp. vesca])

HSP 1 Score: 125.2 bits (313), Expect = 4.7e-26
Identity = 50/65 (76.92%), Postives = 58/65 (89.23%), Query Frame = 1 

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLVFVCDED+ +LSRQPAPGACPYCGG +QA DVET+WRFCFLPLYW++KRKF C+ C 
Sbjct: 1  MCLVFVCDEDETVLSRQPAPGACPYCGGLVQAMDVETQWRFCFLPLYWRTKRKFYCSLCA 60

Query: 61 RELVM 66
          R LV+
Sbjct: 61 RRLVV 65

[Close]
BLAST of CmoCh12G002480 vs. NCBI nr
Match: gi|694372641|ref|XP_009363624.1| (PREDICTED: uncharacterized protein LOC103953586 [Pyrus x bretschneideri])

HSP 1 Score: 125.2 bits (313), Expect = 4.7e-26
Identity = 49/65 (75.38%), Postives = 59/65 (90.77%), Query Frame = 1 

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLVFVCDE++R+LSRQPAPGACPYCGGT+QA DVE+ WRFCFLPLYW++KRK  C+ C 
Sbjct: 1  MCLVFVCDEEERVLSRQPAPGACPYCGGTVQAMDVESNWRFCFLPLYWRTKRKLYCSLCT 60

Query: 61 RELVM 66
          R+LV+
Sbjct: 61 RKLVV 65

The following BLAST results are available for this feature:
BLAST of CmoCh12G002480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh12G002480 vs. TrEMBL
Match NameE-valueIdentityDescription
W9SK68_9ROSA5.5e-2678.46Uncharacterized protein OS=Morus notabilis GN=L484_019841 PE=4 SV=1[more]
A0A0D2TEV4_GOSRA1.2e-2572.73Uncharacterized protein OS=Gossypium raimondii GN=B456_009G067200 PE=4 SV=1[more]
B9T1K2_RICCO3.0e-2470.77Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0216640 PE=4 SV=1[more]
A0A059CQ97_EUCGR6.8e-2470.15Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02015 PE=4 SV=1[more]
A0A061GHB3_THECC8.8e-2470.77Methionyl-tRNA synthetase OS=Theobroma cacao GN=TCM_036826 PE=4 SV=1[more]
BLAST of CmoCh12G002480 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G10695.11.3e-2359.09 unknown protein[more]
AT5G57123.11.1e-2260.61 unknown protein[more]
AT4G29905.18.2e-2159.09 unknown protein[more]
AT1G52855.17.7e-1136.51 unknown protein[more]
AT3G15534.15.5e-0933.33 unknown protein[more]
BLAST of CmoCh12G002480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659088627|ref|XP_008445081.1|6.5e-2881.54PREDICTED: uncharacterized protein LOC103488227 [Cucumis melo][more]
gi|449441998|ref|XP_004138769.1|1.9e-2780.00PREDICTED: uncharacterized protein LOC101206986 [Cucumis sativus][more]
gi|1009174591|ref|XP_015868421.1|1.6e-2676.92PREDICTED: uncharacterized protein LOC107405842 [Ziziphus jujuba][more]
gi|764539942|ref|XP_011459028.1|4.7e-2676.92PREDICTED: uncharacterized protein LOC105349868 [Fragaria vesca subsp. vesca][more]
gi|694372641|ref|XP_009363624.1|4.7e-2675.38PREDICTED: uncharacterized protein LOC103953586 [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006418 tRNA aminoacylation for protein translation
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G002480.1CmoCh12G002480.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33320FAMILY NOT NAMEDcoord: 1..69
score: 4.5
NoneNo IPR availablePANTHERPTHR33320:SF9SUBFAMILY NOT NAMEDcoord: 1..69
score: 4.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh12G002480CmaCh05G006270Cucurbita maxima (Rimu)cmacmoB767
CmoCh12G002480Cla022256Watermelon (97103) v1cmowmB134
CmoCh12G002480MELO3C011187Melon (DHL92) v3.5.1cmomeB151
CmoCh12G002480Lsi08G011260Bottle gourd (USVL1VR-Ls)cmolsiB175
CmoCh12G002480MELO3C011187.2Melon (DHL92) v3.6.1cmomedB167
CmoCh12G002480Cla97C08G155900Watermelon (97103) v2cmowmbB178
CmoCh12G002480Carg08311Silver-seed gourdcarcmoB0078
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G002480Silver-seed gourdcarcmoB0748
CmoCh12G002480Silver-seed gourdcarcmoB0869
CmoCh12G002480Silver-seed gourdcarcmoB1310
CmoCh12G002480Cucumber (Chinese Long) v3cmocucB0176
CmoCh12G002480Cucumber (Chinese Long) v3cmocucB0189
CmoCh12G002480Cucumber (Chinese Long) v3cmocucB0197
CmoCh12G002480Cucumber (Chinese Long) v3cmocucB0199
CmoCh12G002480Watermelon (97103) v2cmowmbB170
CmoCh12G002480Watermelon (97103) v2cmowmbB184
CmoCh12G002480Wax gourdcmowgoB0195
CmoCh12G002480Wax gourdcmowgoB0223
CmoCh12G002480Cucurbita moschata (Rifu)cmocmoB006
CmoCh12G002480Cucurbita moschata (Rifu)cmocmoB142
CmoCh12G002480Cucurbita moschata (Rifu)cmocmoB151
CmoCh12G002480Cucurbita moschata (Rifu)cmocmoB159
CmoCh12G002480Cucumber (Gy14) v1cgycmoB0452
CmoCh12G002480Cucumber (Gy14) v1cgycmoB0448
CmoCh12G002480Cucumber (Gy14) v1cgycmoB0855
CmoCh12G002480Cucumber (Gy14) v1cgycmoB0857
CmoCh12G002480Cucurbita maxima (Rimu)cmacmoB035
CmoCh12G002480Cucurbita maxima (Rimu)cmacmoB176
CmoCh12G002480Cucurbita maxima (Rimu)cmacmoB455
CmoCh12G002480Cucurbita maxima (Rimu)cmacmoB773
CmoCh12G002480Wild cucumber (PI 183967)cmocpiB168
CmoCh12G002480Wild cucumber (PI 183967)cmocpiB150
CmoCh12G002480Wild cucumber (PI 183967)cmocpiB164
CmoCh12G002480Wild cucumber (PI 183967)cmocpiB171
CmoCh12G002480Cucumber (Chinese Long) v2cmocuB166
CmoCh12G002480Melon (DHL92) v3.5.1cmomeB157
CmoCh12G002480Cucumber (Chinese Long) v2cmocuB149
CmoCh12G002480Cucumber (Chinese Long) v2cmocuB161
CmoCh12G002480Cucumber (Chinese Long) v2cmocuB168
CmoCh12G002480Melon (DHL92) v3.5.1cmomeB149
CmoCh12G002480Melon (DHL92) v3.5.1cmomeB158
CmoCh12G002480Watermelon (Charleston Gray)cmowcgB153
CmoCh12G002480Watermelon (Charleston Gray)cmowcgB161
CmoCh12G002480Watermelon (Charleston Gray)cmowcgB167
CmoCh12G002480Watermelon (97103) v1cmowmB140
CmoCh12G002480Watermelon (97103) v1cmowmB148
CmoCh12G002480Cucurbita pepo (Zucchini)cmocpeB148
CmoCh12G002480Cucurbita pepo (Zucchini)cmocpeB158
CmoCh12G002480Cucurbita pepo (Zucchini)cmocpeB167
CmoCh12G002480Cucurbita pepo (Zucchini)cmocpeB173
CmoCh12G002480Cucurbita pepo (Zucchini)cmocpeB174
CmoCh12G002480Cucurbita pepo (Zucchini)cmocpeB177
CmoCh12G002480Bottle gourd (USVL1VR-Ls)cmolsiB163
CmoCh12G002480Bottle gourd (USVL1VR-Ls)cmolsiB164
CmoCh12G002480Bottle gourd (USVL1VR-Ls)cmolsiB181
CmoCh12G002480Cucumber (Gy14) v2cgybcmoB174
CmoCh12G002480Cucumber (Gy14) v2cgybcmoB160
CmoCh12G002480Cucumber (Gy14) v2cgybcmoB277
CmoCh12G002480Melon (DHL92) v3.6.1cmomedB164
CmoCh12G002480Melon (DHL92) v3.6.1cmomedB173
CmoCh12G002480Melon (DHL92) v3.6.1cmomedB174
CmoCh12G002480Silver-seed gourdcarcmoB0083