MELO3C010687 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010687
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Descriptioncyclin-dependent kinase D1;3
Locationchr3 : 29188257 .. 29188565 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATTTCCGAAGACGAGCGCTGTTTGTTTCTGAAAATGAAGCCAAAGGTGGCGGATCGGACGGAGATGGATCTGGAGGAACAACCAACTACTCCAACCAGTGAAGAGTTTAGAATTGGCCGGCGAGTGCATAATTATTTGACATGCCCTCCACCGCCGAGGAAGCCTAAATCACTCCCCGGCCCCATCACCATGAGTCGTACTACTCTACTCCACAATAATAATAATGTCGCCAAATACTTCACTACTTACTCGGAACTCCACGCCGCCTTCTTCGCCTCCACTTCATCATTTCCCTCTACCTAA

mRNA sequence

ATGGTGATTTCCGAAGACGAGCGCTGTTTGTTTCTGAAAATGAAGCCAAAGGTGGCGGATCGGACGGAGATGGATCTGGAGGAACAACCAACTACTCCAACCAGTGAAGAGTTTAGAATTGGCCGGCGAGTGCATAATTATTTGACATGCCCTCCACCGCCGAGGAAGCCTAAATCACTCCCCGGCCCCATCACCATGAGTCGTACTACTCTACTCCACAATAATAATAATGTCGCCAAATACTTCACTACTTACTCGGAACTCCACGCCGCCTTCTTCGCCTCCACTTCATCATTTCCCTCTACCTAA

Coding sequence (CDS)

ATGGTGATTTCCGAAGACGAGCGCTGTTTGTTTCTGAAAATGAAGCCAAAGGTGGCGGATCGGACGGAGATGGATCTGGAGGAACAACCAACTACTCCAACCAGTGAAGAGTTTAGAATTGGCCGGCGAGTGCATAATTATTTGACATGCCCTCCACCGCCGAGGAAGCCTAAATCACTCCCCGGCCCCATCACCATGAGTCGTACTACTCTACTCCACAATAATAATAATGTCGCCAAATACTTCACTACTTACTCGGAACTCCACGCCGCCTTCTTCGCCTCCACTTCATCATTTCCCTCTACCTAA

Protein sequence

MVISEDERCLFLKMKPKVADRTEMDLEEQPTTPTSEEFRIGRRVHNYLTCPPPPRKPKSLPGPITMSRTTLLHNNNNVAKYFTTYSELHAAFFASTSSFPST*
Homology
[Close]
BLAST of MELO3C010687 vs. TrEMBL
Match: A0A0A0LNC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G349030 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.5e-36
Identity = 83/104 (79.81%), Postives = 88/104 (84.62%), Query Frame = 1 

Query: 1   MVISEDERC--LFLKMKPKVADRTEMDLEEQPTTPTSEEFRIGRRVHNYLTCPPPPRKPK 60
           MVISEDERC  L +K+KPKVAD  EM   EQPTTPTSEEFRIGR VHNYL CPPPPRKPK
Sbjct: 1   MVISEDERCRCLLMKVKPKVADLEEM---EQPTTPTSEEFRIGR-VHNYLACPPPPRKPK 60

Query: 61  SLPGPITMSRTTLLHNNNNVAKYFTTYSELHAAFFASTSSFPST 103
           SLPGPITMS TT+ +NNNN AKYFT+YSEL A FFASTS FPST
Sbjct: 61  SLPGPITMSFTTVHNNNNNGAKYFTSYSELQAFFFASTSPFPST 100

[Close]
BLAST of MELO3C010687 vs. NCBI nr
Match: gi|700207198|gb|KGN62317.1| (hypothetical protein Csa_2G349030 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 9.4e-36
Identity = 83/104 (79.81%), Postives = 88/104 (84.62%), Query Frame = 1 

Query: 1   MVISEDERC--LFLKMKPKVADRTEMDLEEQPTTPTSEEFRIGRRVHNYLTCPPPPRKPK 60
           MVISEDERC  L +K+KPKVAD  EM   EQPTTPTSEEFRIGR VHNYL CPPPPRKPK
Sbjct: 1   MVISEDERCRCLLMKVKPKVADLEEM---EQPTTPTSEEFRIGR-VHNYLACPPPPRKPK 60

Query: 61  SLPGPITMSRTTLLHNNNNVAKYFTTYSELHAAFFASTSSFPST 103
           SLPGPITMS TT+ +NNNN AKYFT+YSEL A FFASTS FPST
Sbjct: 61  SLPGPITMSFTTVHNNNNNGAKYFTSYSELQAFFFASTSPFPST 100

The following BLAST results are available for this feature:
BLAST of MELO3C010687 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNC7_CUCSA6.5e-3679.81Uncharacterized protein OS=Cucumis sativus GN=Csa_2G349030 PE=4 SV=1[more]
BLAST of MELO3C010687 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207198|gb|KGN62317.1|9.4e-3679.81hypothetical protein Csa_2G349030 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010687T1MELO3C010687T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C010687Csa2G349030Cucumber (Chinese Long) v2cumeB117
MELO3C010687Bhi04G000565Wax gourdmewgoB345
MELO3C010687CSPI02G17290Wild cucumber (PI 183967)cpimeB118
MELO3C010687Lsi08G016490Bottle gourd (USVL1VR-Ls)lsimeB469
MELO3C010687CsaV3_2G024890Cucumber (Chinese Long) v3cucmeB124
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010687Cucurbita pepo (Zucchini)cpemeB037
MELO3C010687Cucurbita pepo (Zucchini)cpemeB091
MELO3C010687Cucurbita pepo (Zucchini)cpemeB402
MELO3C010687Cucurbita pepo (Zucchini)cpemeB762
MELO3C010687Bottle gourd (USVL1VR-Ls)lsimeB303
MELO3C010687Cucumber (Gy14) v2cgybmeB102
MELO3C010687Cucumber (Gy14) v2cgybmeB340
MELO3C010687Silver-seed gourdcarmeB0248
MELO3C010687Silver-seed gourdcarmeB0506
MELO3C010687Silver-seed gourdcarmeB0624
MELO3C010687Silver-seed gourdcarmeB0720
MELO3C010687Cucumber (Chinese Long) v3cucmeB066
MELO3C010687Cucumber (Chinese Long) v3cucmeB402
MELO3C010687Watermelon (97103) v2mewmbB298
MELO3C010687Watermelon (97103) v2mewmbB302
MELO3C010687Wax gourdmewgoB362
MELO3C010687Melon (DHL92) v3.5.1memeB029
MELO3C010687Melon (DHL92) v3.5.1memeB068
MELO3C010687Cucumber (Gy14) v1cgymeB479
MELO3C010687Cucumber (Gy14) v1cgymeB646
MELO3C010687Cucurbita maxima (Rimu)cmameB163
MELO3C010687Cucurbita maxima (Rimu)cmameB373
MELO3C010687Cucurbita maxima (Rimu)cmameB681
MELO3C010687Cucurbita maxima (Rimu)cmameB727
MELO3C010687Cucurbita moschata (Rifu)cmomeB152
MELO3C010687Cucurbita moschata (Rifu)cmomeB364
MELO3C010687Cucurbita moschata (Rifu)cmomeB673
MELO3C010687Cucurbita moschata (Rifu)cmomeB718
MELO3C010687Wild cucumber (PI 183967)cpimeB064
MELO3C010687Wild cucumber (PI 183967)cpimeB389
MELO3C010687Cucumber (Chinese Long) v2cumeB393
MELO3C010687Watermelon (Charleston Gray)mewcgB295
MELO3C010687Watermelon (Charleston Gray)mewcgB291
MELO3C010687Watermelon (97103) v1mewmB300
MELO3C010687Watermelon (97103) v1mewmB320