MELO3C008638 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008638
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Chromatin remodeling complex subunit isoform 1
Location	chr5 : 15919170 .. 15919367 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGAAGCACGAGGACGTGGATGATGTTGGAAGCGCGTCCGGTGATTCTTTTATCGATGATTCTGAAGACGATGGGCCATCAACTTCTGGGAAGGACGATCAGTTGCATCTCGAGGCAAGCGACATTAGCTTCTTCATTTGTATTTACCTAGTCTTGGCTTTACTTGTTGCTTCATGTCTTGCTAGTCAGTAG

mRNA sequence

ATGGAGGAGAAGCACGAGGACGTGGATGATGTTGGAAGCGCGTCCGGTGATTCTTTTATCGATGATTCTGAAGACGATGGGCCATCAACTTCTGGGAAGGACGATCAGTTGCATCTCGAGGCAAGCGACATTAGCTTCTTCATTTGTATTTACCTAGTCTTGGCTTTACTTGTTGCTTCATGTCTTGCTAGTCAGTAG

Coding sequence (CDS)

ATGGAGGAGAAGCACGAGGACGTGGATGATGTTGGAAGCGCGTCCGGTGATTCTTTTATCGATGATTCTGAAGACGATGGGCCATCAACTTCTGGGAAGGACGATCAGTTGCATCTCGAGGCAAGCGACATTAGCTTCTTCATTTGTATTTACCTAGTCTTGGCTTTACTTGTTGCTTCATGTCTTGCTAGTCAGTAG

Protein sequence

MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISFFICIYLVLALLVASCLASQ*

Homology

[Close]

BLAST of MELO3C008638 vs. TrEMBL
Match: A0A0A0LKL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G076530 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 6.7e-26
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISFFICIYLVLALLVAS 60
          MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDIS FICIY VLALLVAS
Sbjct: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISLFICIYQVLALLVAS 60

Query: 61 CLA 64
          CLA
Sbjct: 61 CLA 63

[Close]

BLAST of MELO3C008638 vs. TrEMBL
Match: W9S6N2_9ROSA (Transcriptional regulator ATRX-like protein OS=Morus notabilis GN=L484_024481 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-09
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGK-DDQLHLEASD 44
          MEE HEDV+DVG +S DSFIDDSEDDGPSTSG+ DD+L +EA++
Sbjct: 1  MEENHEDVEDVGDSSSDSFIDDSEDDGPSTSGRDDDELQMEATE 44

[Close]

BLAST of MELO3C008638 vs. TrEMBL
Match: A0A061F1R3_THECC (Chromatin remodeling complex subunit isoform 1 OS=Theobroma cacao GN=TCM_026141 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-07
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEAS 43
          M+EKHE+V+DV SAS DSFI DS+ D PSTSG+DD LHLE S
Sbjct: 2  MKEKHEEVEDVASASSDSFILDSDGDEPSTSGQDDGLHLEES 43

[Close]

BLAST of MELO3C008638 vs. TrEMBL
Match: A0A061F0I1_THECC (Chromatin remodeling complex subunit isoform 3 OS=Theobroma cacao GN=TCM_026141 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-07
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEAS 43
          M+EKHE+V+DV SAS DSFI DS+ D PSTSG+DD LHLE S
Sbjct: 2  MKEKHEEVEDVASASSDSFILDSDGDEPSTSGQDDGLHLEES 43

[Close]

BLAST of MELO3C008638 vs. TrEMBL
Match: A0A061F8L0_THECC (P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_026141 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-07
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEAS 43
          M+EKHE+V+DV SAS DSFI DS+ D PSTSG+DD LHLE S
Sbjct: 2  MKEKHEEVEDVASASSDSFILDSDGDEPSTSGQDDGLHLEES 43

[Close]

BLAST of MELO3C008638 vs. NCBI nr
Match: gi|700206178|gb|KGN61297.1| (hypothetical protein Csa_2G076530 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 9.6e-26
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISFFICIYLVLALLVAS 60
          MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDIS FICIY VLALLVAS
Sbjct: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISLFICIYQVLALLVAS 60

Query: 61 CLA 64
          CLA
Sbjct: 61 CLA 63

[Close]

BLAST of MELO3C008638 vs. NCBI nr
Match: gi|778667965|ref|XP_011649017.1| (PREDICTED: protein CHROMATIN REMODELING 20 isoform X2 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-14
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE 41
          MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
Sbjct: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE 40

[Close]

BLAST of MELO3C008638 vs. NCBI nr
Match: gi|659082333|ref|XP_008441784.1| (PREDICTED: transcriptional regulator ATRX isoform X2 [Cucumis melo])

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-14
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE 41
          MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
Sbjct: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE 40

[Close]

BLAST of MELO3C008638 vs. NCBI nr
Match: gi|778667969|ref|XP_011649018.1| (PREDICTED: protein CHROMATIN REMODELING 20 isoform X3 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-14
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE 41
          MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
Sbjct: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE 40

[Close]

BLAST of MELO3C008638 vs. NCBI nr
Match: gi|659082335|ref|XP_008441785.1| (PREDICTED: transcriptional regulator ATRX isoform X3 [Cucumis melo])

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-14
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE 41
          MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
Sbjct: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE 40

The following BLAST results are available for this feature:

BLAST of MELO3C008638 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKL8_CUCSA	6.7e-26	96.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G076530 PE=4 SV=1	[more]
W9S6N2_9ROSA	2.0e-09	72.73	Transcriptional regulator ATRX-like protein OS=Morus notabilis GN=L484_024481 PE...	[more]
A0A061F1R3_THECC	1.8e-07	71.43	Chromatin remodeling complex subunit isoform 1 OS=Theobroma cacao GN=TCM_026141 ...	[more]
A0A061F0I1_THECC	1.8e-07	71.43	Chromatin remodeling complex subunit isoform 3 OS=Theobroma cacao GN=TCM_026141 ...	[more]
A0A061F8L0_THECC	1.8e-07	71.43	P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform...	[more]

BLAST of MELO3C008638 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206178\|gb\|KGN61297.1\|	9.6e-26	96.83	hypothetical protein Csa_2G076530 [Cucumis sativus]	[more]
gi\|778667965\|ref\|XP_011649017.1\|	2.9e-14	100.00	PREDICTED: protein CHROMATIN REMODELING 20 isoform X2 [Cucumis sativus]	[more]
gi\|659082333\|ref\|XP_008441784.1\|	2.9e-14	100.00	PREDICTED: transcriptional regulator ATRX isoform X2 [Cucumis melo]	[more]
gi\|778667969\|ref\|XP_011649018.1\|	2.9e-14	100.00	PREDICTED: protein CHROMATIN REMODELING 20 isoform X3 [Cucumis sativus]	[more]
gi\|659082335\|ref\|XP_008441785.1\|	2.9e-14	100.00	PREDICTED: transcriptional regulator ATRX isoform X3 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008638T1	MELO3C008638T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C008638	Csa2G076530	Cucumber (Chinese Long) v2	cumeB137
MELO3C008638	Cla007886	Watermelon (97103) v1	mewmB428
MELO3C008638	CsGy2G007770	Cucumber (Gy14) v2	cgybmeB125
MELO3C008638	Carg23458	Silver-seed gourd	carmeB0487
MELO3C008638	CsaV3_2G009970	Cucumber (Chinese Long) v3	cucmeB144

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008638	Cucurbita maxima (Rimu)	cmameB739
MELO3C008638	Cucurbita moschata (Rifu)	cmomeB167
MELO3C008638	Cucurbita moschata (Rifu)	cmomeB726
MELO3C008638	Wild cucumber (PI 183967)	cpimeB142
MELO3C008638	Watermelon (Charleston Gray)	mewcgB369
MELO3C008638	Cucurbita pepo (Zucchini)	cpemeB106
MELO3C008638	Cucurbita pepo (Zucchini)	cpemeB780
MELO3C008638	Bottle gourd (USVL1VR-Ls)	lsimeB117
MELO3C008638	Watermelon (97103) v2	mewmbB372
MELO3C008638	Wax gourd	mewgoB458
MELO3C008638	Cucumber (Gy14) v1	cgymeB321
MELO3C008638	Cucurbita maxima (Rimu)	cmameB178