Csa2G076530 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G076530
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 6357415 .. 6357988 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCTCGTTGGTCTAAATTTCAACTCTTTCTTCATCTTTCATATACTGAGCGCCGAAGAAGGCTTGCTTTCAACCAATGTTCCATCTAAATCTGCTCCCATACCCAAGGAACTGAAATTGAACTAGGAAAAGGGTGACTGCTTGTTTTTTGCAATTGTTTCCTCGAAGCCTGTGCCTCTGGAAGCATCATTTTCCATTCAAATACCGCCGTCAGGCTTGGTTTTAGGGGTTTTATCATTTTAACATATGAATCTTTTGGTTTTGATTTGATTTTGAGATGGAGGAGAAGCACGAGGACGTGGATGATGTTGGAAGCGCGTCCGGTGATTCTTTTATTGATGATTCTGAAGACGATGGGCCATCGACTTCTGGGAAGGACGATCAGTTACATCTCGAGGCAAGCGACATTAGCCTTTTCATTTGTATTTACCAAGTCTTGGCTTTACTTGTTGCTTCATGTCTTGCTAGTCAGTAGGTATTAATATGTTTCAGTTTTATTGTGTTCTATAATCTCAAGTATGCTACGTTTGTTGTTTGTTTTCGTTTGGTTCATTGAGCAGGAACCATTGACTGA

mRNA sequence

ATGGAGGAGAAGCACGAGGACGTGGATGATGTTGGAAGCGCGTCCGGTGATTCTTTTATTGATGATTCTGAAGACGATGGGCCATCGACTTCTGGGAAGGACGATCAGTTACATCTCGAGGCAAGCGACATTAGCCTTTTCATTTGTATTTACCAAGTCTTGGCTTTACTTGTTGCTTCATGTCTTGCTAGAACCATTGACTGA

Coding sequence (CDS)

ATGGAGGAGAAGCACGAGGACGTGGATGATGTTGGAAGCGCGTCCGGTGATTCTTTTATTGATGATTCTGAAGACGATGGGCCATCGACTTCTGGGAAGGACGATCAGTTACATCTCGAGGCAAGCGACATTAGCCTTTTCATTTGTATTTACCAAGTCTTGGCTTTACTTGTTGCTTCATGTCTTGCTAGAACCATTGACTGA

Protein sequence

MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISLFICIYQVLALLVASCLARTID*

Homology

[Close]

BLAST of Csa2G076530 vs. TrEMBL
Match: A0A0A0LKL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G076530 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISLFICIYQVLALLVAS 60
          MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISLFICIYQVLALLVAS
Sbjct: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISLFICIYQVLALLVAS 60

Query: 61 CLARTID 68
          CLARTID
Sbjct: 61 CLARTID 67

[Close]

BLAST of Csa2G076530 vs. TrEMBL
Match: W9S6N2_9ROSA (Transcriptional regulator ATRX-like protein OS=Morus notabilis GN=L484_024481 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-09
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGK-DDQLHLEASDISLFICIYQVL 55
          MEE HEDV+DVG +S DSFIDDSEDDGPSTSG+ DD+L +EA++  +   I ++L
Sbjct: 1  MEENHEDVEDVGDSSSDSFIDDSEDDGPSTSGRDDDELQMEATEEEIEEIIAELL 55

[Close]

BLAST of Csa2G076530 vs. TrEMBL
Match: A0A061F1R3_THECC (Chromatin remodeling complex subunit isoform 1 OS=Theobroma cacao GN=TCM_026141 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-07
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEAS 43
          M+EKHE+V+DV SAS DSFI DS+ D PSTSG+DD LHLE S
Sbjct: 2  MKEKHEEVEDVASASSDSFILDSDGDEPSTSGQDDGLHLEES 43

[Close]

BLAST of Csa2G076530 vs. TrEMBL
Match: A0A061F0I1_THECC (Chromatin remodeling complex subunit isoform 3 OS=Theobroma cacao GN=TCM_026141 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-07
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEAS 43
          M+EKHE+V+DV SAS DSFI DS+ D PSTSG+DD LHLE S
Sbjct: 2  MKEKHEEVEDVASASSDSFILDSDGDEPSTSGQDDGLHLEES 43

[Close]

BLAST of Csa2G076530 vs. TrEMBL
Match: A0A061F8L0_THECC (P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_026141 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-07
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEAS 43
          M+EKHE+V+DV SAS DSFI DS+ D PSTSG+DD LHLE S
Sbjct: 2  MKEKHEEVEDVASASSDSFILDSDGDEPSTSGQDDGLHLEES 43

[Close]

BLAST of Csa2G076530 vs. NCBI nr
Match: gi|700206178|gb|KGN61297.1| (hypothetical protein Csa_2G076530 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 2.5e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISLFICIYQVLALLVAS 60
          MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISLFICIYQVLALLVAS
Sbjct: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISLFICIYQVLALLVAS 60

Query: 61 CLARTID 68
          CLARTID
Sbjct: 61 CLARTID 67

[Close]

BLAST of Csa2G076530 vs. NCBI nr
Match: gi|778667965|ref|XP_011649017.1| (PREDICTED: protein CHROMATIN REMODELING 20 isoform X2 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 3.0e-14
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE 41
          MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
Sbjct: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE 40

[Close]

BLAST of Csa2G076530 vs. NCBI nr
Match: gi|659082333|ref|XP_008441784.1| (PREDICTED: transcriptional regulator ATRX isoform X2 [Cucumis melo])

HSP 1 Score: 85.9 bits (211), Expect = 3.0e-14
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE 41
          MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
Sbjct: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE 40

[Close]

BLAST of Csa2G076530 vs. NCBI nr
Match: gi|778667959|ref|XP_011649015.1| (PREDICTED: protein CHROMATIN REMODELING 20 isoform X1 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 3.0e-14
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE 41
          MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
Sbjct: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE 40

[Close]

BLAST of Csa2G076530 vs. NCBI nr
Match: gi|659082335|ref|XP_008441785.1| (PREDICTED: transcriptional regulator ATRX isoform X3 [Cucumis melo])

HSP 1 Score: 85.9 bits (211), Expect = 3.0e-14
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1


Query: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE 41
          MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
Sbjct: 1  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE 40

The following BLAST results are available for this feature:

BLAST of Csa2G076530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKL8_CUCSA	1.8e-29	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G076530 PE=4 SV=1	[more]
W9S6N2_9ROSA	1.5e-09	61.82	Transcriptional regulator ATRX-like protein OS=Morus notabilis GN=L484_024481 PE...	[more]
A0A061F1R3_THECC	1.9e-07	71.43	Chromatin remodeling complex subunit isoform 1 OS=Theobroma cacao GN=TCM_026141 ...	[more]
A0A061F0I1_THECC	1.9e-07	71.43	Chromatin remodeling complex subunit isoform 3 OS=Theobroma cacao GN=TCM_026141 ...	[more]
A0A061F8L0_THECC	1.9e-07	71.43	P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform...	[more]

BLAST of Csa2G076530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206178\|gb\|KGN61297.1\|	2.5e-29	100.00	hypothetical protein Csa_2G076530 [Cucumis sativus]	[more]
gi\|778667965\|ref\|XP_011649017.1\|	3.0e-14	100.00	PREDICTED: protein CHROMATIN REMODELING 20 isoform X2 [Cucumis sativus]	[more]
gi\|659082333\|ref\|XP_008441784.1\|	3.0e-14	100.00	PREDICTED: transcriptional regulator ATRX isoform X2 [Cucumis melo]	[more]
gi\|778667959\|ref\|XP_011649015.1\|	3.0e-14	100.00	PREDICTED: protein CHROMATIN REMODELING 20 isoform X1 [Cucumis sativus]	[more]
gi\|659082335\|ref\|XP_008441785.1\|	3.0e-14	100.00	PREDICTED: transcriptional regulator ATRX isoform X3 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G076530.1	Csa2G076530.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G076530	Cla007886	Watermelon (97103) v1	cuwmB156
Csa2G076530	MELO3C008638	Melon (DHL92) v3.5.1	cumeB137
Csa2G076530	CsGy2G007770	Cucumber (Gy14) v2	cgybcuB056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G076530	Melon (DHL92) v3.6.1	cumedB129
Csa2G076530	Melon (DHL92) v3.6.1	cumedB135
Csa2G076530	Silver-seed gourd	carcuB0184
Csa2G076530	Silver-seed gourd	carcuB0514
Csa2G076530	Watermelon (97103) v2	cuwmbB109
Csa2G076530	Wax gourd	cuwgoB139
Csa2G076530	Cucumber (Gy14) v1	cgycuB274
Csa2G076530	Cucurbita maxima (Rimu)	cmacuB165
Csa2G076530	Cucurbita maxima (Rimu)	cmacuB786
Csa2G076530	Cucurbita moschata (Rifu)	cmocuB150
Csa2G076530	Cucurbita moschata (Rifu)	cmocuB779
Csa2G076530	Watermelon (Charleston Gray)	cuwcgB103
Csa2G076530	Cucurbita pepo (Zucchini)	cpecuB098
Csa2G076530	Cucurbita pepo (Zucchini)	cpecuB811
Csa2G076530	Bottle gourd (USVL1VR-Ls)	culsiB098