MELO3C008021 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C008021
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPHD finger protein MALE MEIOCYTE DEATH 1
Locationchr8 : 6819662 .. 6820118 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGAATCGTCGAGTTCGCGTAATTCGGAGGAGGTATTGGGTGCGGCGCAGCAGTTGATGCAGTTAAGCAACGACGACAATAGTAGCAATGTCGATGTAGTCGTTGCGGCGAAGAAGAACAAGAAGAAGGATTGTTGTGGTGGTGGCGGTCGAGAGGAAGAGGTTGATCAAAAGAGATGTCAAATAGAATCGTCGATTTGGTTGAAAATTGAAGAGATTTTTGGGAAAGATGAAGGAGGTTGTTGTGATCATCATCATTCTTCTATTATTAACTCTCGTCCTAAGAAGAGACGATTTCGATCCATTCAAAGTATATATATGAAGACTAAACCTATGATCACTAATGGTAGATTCTCTACTAAGACGATGGTCGGGAATTGATCAACGTACGTACGCGGTGGCAGTGACCGTGGCGACGGTGGTAGGTTCGACTAATTTGGAGTTTCTTTGA

mRNA sequence

ATGGAAGAAGAATCGTCGAGTTCGCGTAATTCGGAGGAGGTATTGGGTGCGGCGCAGCAGTTGATGCAGTTAAGCAACGACGACAATAGTAGCAATGTCGATGTAGTCGTTGCGGCGAAGAAGAACAAGAAGAAGGATTGTTGTGGTGGTGGCGGTCGAGAGGAAGAGGTTGATCAAAAGAGATGTCAAATAGAATCGTCGATTTGGTTGAAAATTGAAGAGATTTTTGGGAAAGATGAAGGAGATTCTCTACTAAGACGATGGTCGGGAATTGATCAACGTACGTACGCGGTGGCAGTGACCGTGGCGACGGTGGTAGGTTCGACTAATTTGGAGTTTCTTTGA

Coding sequence (CDS)

ATGGAAGAAGAATCGTCGAGTTCGCGTAATTCGGAGGAGGTATTGGGTGCGGCGCAGCAGTTGATGCAGTTAAGCAACGACGACAATAGTAGCAATGTCGATGTAGTCGTTGCGGCGAAGAAGAACAAGAAGAAGGATTGTTGTGGTGGTGGCGGTCGAGAGGAAGAGGTTGATCAAAAGAGATGTCAAATAGAATCGTCGATTTGGTTGAAAATTGAAGAGATTTTTGGGAAAGATGAAGGAGATTCTCTACTAAGACGATGGTCGGGAATTGATCAACGTACGTACGCGGTGGCAGTGACCGTGGCGACGGTGGTAGGTTCGACTAATTTGGAGTTTCTTTGA

Protein sequence

MEEESSSSRNSEEVLGAAQQLMQLSNDDNSSNVDVVVAAKKNKKKDCCGGGGREEEVDQKRCQIESSIWLKIEEIFGKDEGDSLLRRWSGIDQRTYAVAVTVATVVGSTNLEFL*
Homology
[Close]
BLAST of MELO3C008021 vs. TrEMBL
Match: A0A0A0KFU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486710 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-29
Identity = 79/98 (80.61%), Postives = 80/98 (81.63%), Query Frame = 1 

Query: 1  MEEESSSSRNSEEVLGAAQQLMQLSNDDNSSNVDVVVA-AKKNKKKDCCGGGG-----RE 60
          MEEESSSS NSEEVLGAAQQLMQLSNDDNSSNVDVVVA AKKNKKKD  G GG     RE
Sbjct: 1  MEEESSSSPNSEEVLGAAQQLMQLSNDDNSSNVDVVVAEAKKNKKKDFGGDGGGGGGCRE 60

Query: 61 EEVDQKRCQIESSIWLKIEEIFGKD-EGDSLLRRWSGI 92
          EEVDQKRCQIESS+WLKIEEIFGKD EGD      S I
Sbjct: 61 EEVDQKRCQIESSVWLKIEEIFGKDNEGDHCCHHHSSI 98

[Close]
BLAST of MELO3C008021 vs. NCBI nr
Match: gi|700193194|gb|KGN48398.1| (hypothetical protein Csa_6G486710 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.5e-29
Identity = 79/98 (80.61%), Postives = 80/98 (81.63%), Query Frame = 1 

Query: 1  MEEESSSSRNSEEVLGAAQQLMQLSNDDNSSNVDVVVA-AKKNKKKDCCGGGG-----RE 60
          MEEESSSS NSEEVLGAAQQLMQLSNDDNSSNVDVVVA AKKNKKKD  G GG     RE
Sbjct: 1  MEEESSSSPNSEEVLGAAQQLMQLSNDDNSSNVDVVVAEAKKNKKKDFGGDGGGGGGCRE 60

Query: 61 EEVDQKRCQIESSIWLKIEEIFGKD-EGDSLLRRWSGI 92
          EEVDQKRCQIESS+WLKIEEIFGKD EGD      S I
Sbjct: 61 EEVDQKRCQIESSVWLKIEEIFGKDNEGDHCCHHHSSI 98

The following BLAST results are available for this feature:
BLAST of MELO3C008021 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFU1_CUCSA1.0e-2980.61Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486710 PE=4 SV=1[more]
BLAST of MELO3C008021 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193194|gb|KGN48398.1|1.5e-2980.61hypothetical protein Csa_6G486710 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU47945melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008021T1MELO3C008021T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU47945MU47945transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C008021Cla008466Watermelon (97103) v1mewmB571
MELO3C008021ClCG01G015770Watermelon (Charleston Gray)mewcgB516
MELO3C008021Cla97C01G014720Watermelon (97103) v2mewmbB516
MELO3C008021CSPI06G26890Wild cucumber (PI 183967)cpimeB513
MELO3C008021CsaV3_6G042040Cucumber (Chinese Long) v3cucmeB521
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C008021Silver-seed gourdcarmeB0242
MELO3C008021Silver-seed gourdcarmeB0806
MELO3C008021Wax gourdmewgoB654
MELO3C008021Cucumber (Gy14) v1cgymeB132
MELO3C008021Cucurbita maxima (Rimu)cmameB609
MELO3C008021Cucurbita maxima (Rimu)cmameB799
MELO3C008021Cucurbita moschata (Rifu)cmomeB598
MELO3C008021Cucurbita moschata (Rifu)cmomeB783
MELO3C008021Cucumber (Chinese Long) v2cumeB153
MELO3C008021Cucumber (Chinese Long) v2cumeB508
MELO3C008021Cucurbita pepo (Zucchini)cpemeB069
MELO3C008021Cucurbita pepo (Zucchini)cpemeB458
MELO3C008021Bottle gourd (USVL1VR-Ls)lsimeB150
MELO3C008021Cucumber (Gy14) v2cgybmeB446