MELO3C008021T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C008021T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPHD finger protein MALE MEIOCYTE DEATH 1
Locationchr8 : 6819662 .. 6820118 (-)
Sequence length345
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGAATCGTCGAGTTCGCGTAATTCGGAGGAGGTATTGGGTGCGGCGCAGCAGTTGATGCAGTTAAGCAACGACGACAATAGTAGCAATGTCGATGTAGTCGTTGCGGCGAAGAAGAACAAGAAGAAGGATTGTTGTGGTGGTGGCGGTCGAGAGGAAGAGGTTGATCAAAAGAGATGTCAAATAGAATCGTCGATTTGGTTGAAAATTGAAGAGATTTTTGGGAAAGATGAAGGAGGTTGTTGTGATCATCATCATTCTTCTATTATTAACTCTCGTCCTAAGAAGAGACGATTTCGATCCATTCAAAGTATATATATGAAGACTAAACCTATGATCACTAATGGTAGATTCTCTACTAAGACGATGGTCGGGAATTGATCAACGTACGTACGCGGTGGCAGTGACCGTGGCGACGGTGGTAGGTTCGACTAATTTGGAGTTTCTTTGA

mRNA sequence

ATGGAAGAAGAATCGTCGAGTTCGCGTAATTCGGAGGAGGTATTGGGTGCGGCGCAGCAGTTGATGCAGTTAAGCAACGACGACAATAGTAGCAATGTCGATGTAGTCGTTGCGGCGAAGAAGAACAAGAAGAAGGATTGTTGTGGTGGTGGCGGTCGAGAGGAAGAGGTTGATCAAAAGAGATGTCAAATAGAATCGTCGATTTGGTTGAAAATTGAAGAGATTTTTGGGAAAGATGAAGGAGATTCTCTACTAAGACGATGGTCGGGAATTGATCAACGTACGTACGCGGTGGCAGTGACCGTGGCGACGGTGGTAGGTTCGACTAATTTGGAGTTTCTTTGA

Coding sequence (CDS)

ATGGAAGAAGAATCGTCGAGTTCGCGTAATTCGGAGGAGGTATTGGGTGCGGCGCAGCAGTTGATGCAGTTAAGCAACGACGACAATAGTAGCAATGTCGATGTAGTCGTTGCGGCGAAGAAGAACAAGAAGAAGGATTGTTGTGGTGGTGGCGGTCGAGAGGAAGAGGTTGATCAAAAGAGATGTCAAATAGAATCGTCGATTTGGTTGAAAATTGAAGAGATTTTTGGGAAAGATGAAGGAGATTCTCTACTAAGACGATGGTCGGGAATTGATCAACGTACGTACGCGGTGGCAGTGACCGTGGCGACGGTGGTAGGTTCGACTAATTTGGAGTTTCTTTGA

Protein sequence

MEEESSSSRNSEEVLGAAQQLMQLSNDDNSSNVDVVVAAKKNKKKDCCGGGGREEEVDQKRCQIESSIWLKIEEIFGKDEGDSLLRRWSGIDQRTYAVAVTVATVVGSTNLEFL*
Homology
[Close]
BLAST of MELO3C008021T1 vs. TrEMBL
Match: A0A0A0KFU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486710 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-29
Identity = 79/98 (80.61%), Postives = 80/98 (81.63%), Query Frame = 1 

Query: 1  MEEESSSSRNSEEVLGAAQQLMQLSNDDNSSNVDVVVA-AKKNKKKDCCGGGG-----RE 60
          MEEESSSS NSEEVLGAAQQLMQLSNDDNSSNVDVVVA AKKNKKKD  G GG     RE
Sbjct: 1  MEEESSSSPNSEEVLGAAQQLMQLSNDDNSSNVDVVVAEAKKNKKKDFGGDGGGGGGCRE 60

Query: 61 EEVDQKRCQIESSIWLKIEEIFGKD-EGDSLLRRWSGI 92
          EEVDQKRCQIESS+WLKIEEIFGKD EGD      S I
Sbjct: 61 EEVDQKRCQIESSVWLKIEEIFGKDNEGDHCCHHHSSI 98

[Close]
BLAST of MELO3C008021T1 vs. NCBI nr
Match: gi|700193194|gb|KGN48398.1| (hypothetical protein Csa_6G486710 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.5e-29
Identity = 79/98 (80.61%), Postives = 80/98 (81.63%), Query Frame = 1 

Query: 1  MEEESSSSRNSEEVLGAAQQLMQLSNDDNSSNVDVVVA-AKKNKKKDCCGGGG-----RE 60
          MEEESSSS NSEEVLGAAQQLMQLSNDDNSSNVDVVVA AKKNKKKD  G GG     RE
Sbjct: 1  MEEESSSSPNSEEVLGAAQQLMQLSNDDNSSNVDVVVAEAKKNKKKDFGGDGGGGGGCRE 60

Query: 61 EEVDQKRCQIESSIWLKIEEIFGKD-EGDSLLRRWSGI 92
          EEVDQKRCQIESS+WLKIEEIFGKD EGD      S I
Sbjct: 61 EEVDQKRCQIESSVWLKIEEIFGKDNEGDHCCHHHSSI 98

The following BLAST results are available for this feature:
BLAST of MELO3C008021T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFU1_CUCSA1.0e-2980.61Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486710 PE=4 SV=1[more]
BLAST of MELO3C008021T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193194|gb|KGN48398.1|1.5e-2980.61hypothetical protein Csa_6G486710 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C008021MELO3C008021gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C008021T1MELO3C008021T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C008021T1.cds2MELO3C008021T1.cds2CDS
MELO3C008021T1.cds1MELO3C008021T1.cds1CDS