MELO3C007552.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C007552.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionDNA-directed RNA polymerase II subunit RPB1-like protein
Locationchr08 : 3579600 .. 3579884 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCACTCGGGTTTTAACTTACTTCTTTTTATTCATCATCTTGTCTCACCATCTCGTTGTTATTGAAGGAAGGAGATTGAAAGTGAATAAAAAGGGGCTACGTTGTGGGACATGCATGACTCCCACCACACCAAAAACCATAACCAAATCAGGAGAGGAAGCACAAAAAAGCATTAATAATAAGCTCCACCACAGAATTGCCGATGGCTATGTGGATGCCTTCCGCCCCACAACCCCCGGCCATAGTCCCGGCGTTGGTCACTCCATTCAGAACCGATAA

mRNA sequence

ATGGCCGCCACTCGGGTTTTAACTTACTTCTTTTTATTCATCATCTTGTCTCACCATCTCGTTGTTATTGAAGGAAGGAGATTGAAAGTGAATAAAAAGGGGCTACGTTGTGGGACATGCATGACTCCCACCACACCAAAAACCATAACCAAATCAGGAGAGGAAGCACAAAAAAGCATTAATAATAAGCTCCACCACAGAATTGCCGATGGCTATGTGGATGCCTTCCGCCCCACAACCCCCGGCCATAGTCCCGGCGTTGGTCACTCCATTCAGAACCGATAA

Coding sequence (CDS)

ATGGCCGCCACTCGGGTTTTAACTTACTTCTTTTTATTCATCATCTTGTCTCACCATCTCGTTGTTATTGAAGGAAGGAGATTGAAAGTGAATAAAAAGGGGCTACGTTGTGGGACATGCATGACTCCCACCACACCAAAAACCATAACCAAATCAGGAGAGGAAGCACAAAAAAGCATTAATAATAAGCTCCACCACAGAATTGCCGATGGCTATGTGGATGCCTTCCGCCCCACAACCCCCGGCCATAGTCCCGGCGTTGGTCACTCCATTCAGAACCGATAA

Protein sequence

MAATRVLTYFFLFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSINNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR
BLAST of MELO3C007552.2 vs. NCBI nr
Match: KGN48514.1 (hypothetical protein Csa_6G490780 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 9.8e-44
Identity = 90/94 (95.74%), Postives = 90/94 (95.74%), Query Frame = 0

Query: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSI 60
          MAATRVLTYFFLFIILSHHLVVIEGRRLKV K GLRCGTCMTPTTPKTITKS EEAQKS 
Sbjct: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST 60

Query: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 95
          NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR
Sbjct: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 94

BLAST of MELO3C007552.2 vs. NCBI nr
Match: PQQ18182.1 (hypothetical protein Pyn_35999 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 76.6 bits (187), Expect = 4.9e-11
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 0

Query: 10 FFLFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSINNKLHHRIA 69
          FFL +I SH L+ IEGR +KVN K L+C  C++P      T++GE   +       H +A
Sbjct: 11 FFLLMIFSHELICIEGRNVKVN-KDLKCVKCLSPDAK---TRAGEAYGE-------HTVA 70

Query: 70 D----GYVDAFRPTTPGHSPGVGHSIQN 94
          +    G+V+AFRPTTPGHSPGVGH++ N
Sbjct: 71 ESPSPGHVEAFRPTTPGHSPGVGHAVHN 87

BLAST of MELO3C007552.2 vs. NCBI nr
Match: ONH96545.1 (hypothetical protein PRUPE_7G136000 [Prunus persica])

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 0

Query: 10 FFLFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSINNKLHHRIA 69
          FFL +I SH L+ IEGR L V+ K L+C  C++P  PKT     +E    + +      +
Sbjct: 11 FFLLMIFSHELICIEGRNLNVS-KDLKCVKCLSP-DPKTSAGEVDEEHTLVESP-----S 70

Query: 70 DGYVDAFRPTTPGHSPGVGHSIQN 94
           G+V+AFRPTTPGHSPGVGH++ N
Sbjct: 71 PGHVEAFRPTTPGHSPGVGHAVHN 87

BLAST of MELO3C007552.2 vs. NCBI nr
Match: ESR39096.1 (hypothetical protein CICLE_v10027106mg [Citrus clementina])

HSP 1 Score: 73.2 bits (178), Expect = 5.4e-10
Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = 0

Query: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSI 60
          MA       FF+ +I SH L  +EGR LK++ K L+C  C+   +P   +KS   A+ + 
Sbjct: 1  MANVSCTCLFFILMIFSHELCDVEGRNLKIS-KSLKCAKCL--LSPDGQSKSKPIARDTN 60

Query: 61 NNK-----LHH--RIADGYVDAFRPTTPGHSPGVGH 90
          N+      LHH  +  +G+VDAFRPTTPGHSPGVGH
Sbjct: 61 NHDASPSLLHHGTKTTEGFVDAFRPTTPGHSPGVGH 93

BLAST of MELO3C007552.2 vs. NCBI nr
Match: PNT27019.1 (hypothetical protein POPTR_007G041500v3 [Populus trichocarpa])

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 41/95 (43.16%), Postives = 60/95 (63.16%), Query Frame = 0

Query: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSI 60
          MA       FFL ++LS++++ +EGR L++ KK L+      P   K+I ++      S 
Sbjct: 1  MANAACTCLFFLLMLLSYNILCVEGRSLEL-KKALKHAKRCNP-GGKSIERNTLLNSASP 60

Query: 61 NNKLHHRI--ADGYVDAFRPTTPGHSPGVGHSIQN 94
          +N LHH +  +DG+V+AFRPT PGHSPGVGHS+ N
Sbjct: 61 SNHLHHTVKTSDGFVEAFRPTNPGHSPGVGHSVHN 93

BLAST of MELO3C007552.2 vs. TAIR10
Match: AT2G23440.1 (unknown protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.0e-06
Identity = 34/93 (36.56%), Postives = 44/93 (47.31%), Query Frame = 0

Query: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSI 60
          MA   V  + F+F +L+  +  IEGR+L          T  T TT + I   G     S 
Sbjct: 1  MATINVYVFAFIF-LLTISVGSIEGRKL----------TKFTVTTSEEIRAGGSVLSSSP 60

Query: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQN 94
            +         VD FRPT PGHSPG+GHS+ N
Sbjct: 61 PTEPLESPPSHGVDTFRPTEPGHSPGIGHSVHN 82

BLAST of MELO3C007552.2 vs. TAIR10
Match: AT3G50610.1 (unknown protein)

HSP 1 Score: 40.4 bits (93), Expect = 7.0e-04
Identity = 17/39 (43.59%), Postives = 21/39 (53.85%), Query Frame = 0

Query: 55  EAQKSINNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQN 94
           E +K +   +      G  D F PT+PGHSPGVGH   N
Sbjct: 63  EGRKLLKTNVQDHFKTGSTDDFAPTSPGHSPGVGHKKGN 101

BLAST of MELO3C007552.2 vs. Swiss-Prot
Match: sp|O80460|PCEP3_ARATH (Precursor of CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.6e-05
Identity = 34/93 (36.56%), Postives = 44/93 (47.31%), Query Frame = 0

Query: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSI 60
          MA   V  + F+F +L+  +  IEGR+L          T  T TT + I   G     S 
Sbjct: 1  MATINVYVFAFIF-LLTISVGSIEGRKL----------TKFTVTTSEEIRAGGSVLSSSP 60

Query: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQN 94
            +         VD FRPT PGHSPG+GHS+ N
Sbjct: 61 PTEPLESPPSHGVDTFRPTEPGHSPGIGHSVHN 82

BLAST of MELO3C007552.2 vs. Swiss-Prot
Match: sp|P0DN97|PCEP8_ARATH (Precursor of CEP8 OS=Arabidopsis thaliana OX=3702 GN=CEP8 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.6e-05
Identity = 25/83 (30.12%), Postives = 43/83 (51.81%), Query Frame = 0

Query: 7  LTYFFLFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSINNKLHH 66
          ++   + I++SH ++  E R L+ ++K ++  T         +   G   +  I+ + H 
Sbjct: 11 ISLLIIAILVSHEIIPTEARHLRTHRKSIKNSTLTVHEGAGGLRTGGGSVKTDISKEEHG 70

Query: 67 RIADGYVDAFRPTTPGHSPGVGH 90
                VD FRPTTPG+SPG+GH
Sbjct: 71 ------VDEFRPTTPGNSPGIGH 87

BLAST of MELO3C007552.2 vs. TrEMBL
Match: tr|A0A0A0KIB5|A0A0A0KIB5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490780 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.5e-44
Identity = 90/94 (95.74%), Postives = 90/94 (95.74%), Query Frame = 0

Query: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSI 60
          MAATRVLTYFFLFIILSHHLVVIEGRRLKV K GLRCGTCMTPTTPKTITKS EEAQKS 
Sbjct: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST 60

Query: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 95
          NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR
Sbjct: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 94

BLAST of MELO3C007552.2 vs. TrEMBL
Match: tr|M5W563|M5W563_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G136000 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.2e-11
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 0

Query: 10 FFLFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSINNKLHHRIA 69
          FFL +I SH L+ IEGR L V+ K L+C  C++P  PKT     +E    + +      +
Sbjct: 11 FFLLMIFSHELICIEGRNLNVS-KDLKCVKCLSP-DPKTSAGEVDEEHTLVESP-----S 70

Query: 70 DGYVDAFRPTTPGHSPGVGHSIQN 94
           G+V+AFRPTTPGHSPGVGH++ N
Sbjct: 71 PGHVEAFRPTTPGHSPGVGHAVHN 87

BLAST of MELO3C007552.2 vs. TrEMBL
Match: tr|V4SPP4|V4SPP4_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027106mg PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-10
Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = 0

Query: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSI 60
          MA       FF+ +I SH L  +EGR LK++ K L+C  C+   +P   +KS   A+ + 
Sbjct: 1  MANVSCTCLFFILMIFSHELCDVEGRNLKIS-KSLKCAKCL--LSPDGQSKSKPIARDTN 60

Query: 61 NNK-----LHH--RIADGYVDAFRPTTPGHSPGVGH 90
          N+      LHH  +  +G+VDAFRPTTPGHSPGVGH
Sbjct: 61 NHDASPSLLHHGTKTTEGFVDAFRPTTPGHSPGVGH 93

BLAST of MELO3C007552.2 vs. TrEMBL
Match: tr|A0A2G5DS81|A0A2G5DS81_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01500130v1 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-09
Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 0

Query: 12 LFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSINNKLHHRIAD- 71
          L ++LSH ++  EGR LK+ KK   C  C +  T +   K   + QK+  + +HH+I   
Sbjct: 14 LVLVLSHEMIHTEGRHLKI-KKRTACVKCSSSNTVR--GKKESDGQKT--SDVHHKITPM 73

Query: 72 -GYVDAFRPTTPGHSPGVGHSIQN 94
           G+V+AFRPTTPGHSPG+GHSIQ+
Sbjct: 74 AGFVEAFRPTTPGHSPGIGHSIQH 92

BLAST of MELO3C007552.2 vs. TrEMBL
Match: tr|U5G8B4|U5G8B4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G041500v3 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-09
Identity = 41/95 (43.16%), Postives = 60/95 (63.16%), Query Frame = 0

Query: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSI 60
          MA       FFL ++LS++++ +EGR L++ KK L+      P   K+I ++      S 
Sbjct: 1  MANAACTCLFFLLMLLSYNILCVEGRSLEL-KKALKHAKRCNP-GGKSIERNTLLNSASP 60

Query: 61 NNKLHHRI--ADGYVDAFRPTTPGHSPGVGHSIQN 94
          +N LHH +  +DG+V+AFRPT PGHSPGVGHS+ N
Sbjct: 61 SNHLHHTVKTSDGFVEAFRPTNPGHSPGVGHSVHN 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN48514.19.8e-4495.74hypothetical protein Csa_6G490780 [Cucumis sativus][more]
PQQ18182.14.9e-1147.73hypothetical protein Pyn_35999 [Prunus yedoensis var. nudiflora][more]
ONH96545.11.1e-1047.62hypothetical protein PRUPE_7G136000 [Prunus persica][more]
ESR39096.15.4e-1044.79hypothetical protein CICLE_v10027106mg [Citrus clementina][more]
PNT27019.11.6e-0943.16hypothetical protein POPTR_007G041500v3 [Populus trichocarpa][more]
Match NameE-valueIdentityDescription
AT2G23440.12.0e-0636.56unknown protein[more]
AT3G50610.17.0e-0443.59unknown protein[more]
Match NameE-valueIdentityDescription
sp|O80460|PCEP3_ARATH3.6e-0536.56Precursor of CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=1 SV=1[more]
sp|P0DN97|PCEP8_ARATH3.6e-0530.12Precursor of CEP8 OS=Arabidopsis thaliana OX=3702 GN=CEP8 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A0A0KIB5|A0A0A0KIB5_CUCSA6.5e-4495.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490780 PE=4 SV=1[more]
tr|M5W563|M5W563_PRUPE7.2e-1147.62Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G136000 PE=4 SV=1[more]
tr|V4SPP4|V4SPP4_9ROSI3.6e-1044.79Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027106mg PE=4 ... [more]
tr|A0A2G5DS81|A0A2G5DS81_AQUCA1.0e-0946.43Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01500130v1 PE=4... [more]
tr|U5G8B4|U5G8B4_POPTR1.0e-0943.16Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G041500v3 PE=... [more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0048364root development
Vocabulary: INTERPRO
TermDefinition
IPR033250CEP
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006995 cellular response to nitrogen starvation
biological_process GO:1902025 nitrate import
biological_process GO:1901371 regulation of leaf morphogenesis
biological_process GO:2000280 regulation of root development
biological_process GO:0032774 RNA biosynthetic process
biological_process GO:0048364 root development
cellular_component GO:0048046 apoplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0005179 hormone activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C007552.2.1MELO3C007552.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..94
NoneNo IPR availablePANTHERPTHR33348:SF7SUBFAMILY NOT NAMEDcoord: 5..93
IPR033250C-terminally encoded peptidePANTHERPTHR33348FAMILY NOT NAMEDcoord: 5..93

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C007552.2Watermelon (97103) v2medwmbB505
MELO3C007552.2Watermelon (97103) v2medwmbB518
MELO3C007552.2Wax gourdmedwgoB629
MELO3C007552.2Cucumber (Gy14) v2cgybmedB283
MELO3C007552.2Cucumber (Gy14) v2cgybmedB500
MELO3C007552.2Cucumber (Gy14) v1cgymedB131
MELO3C007552.2Cucumber (Gy14) v1cgymedB382
MELO3C007552.2Cucurbita maxima (Rimu)cmamedB045
MELO3C007552.2Cucurbita maxima (Rimu)cmamedB157
MELO3C007552.2Cucurbita maxima (Rimu)cmamedB565
MELO3C007552.2Cucurbita maxima (Rimu)cmamedB703
MELO3C007552.2Cucurbita maxima (Rimu)cmamedB840
MELO3C007552.2Cucurbita moschata (Rifu)cmomedB036
MELO3C007552.2Cucurbita moschata (Rifu)cmomedB146
MELO3C007552.2Cucurbita moschata (Rifu)cmomedB553
MELO3C007552.2Cucurbita moschata (Rifu)cmomedB694
MELO3C007552.2Cucurbita pepo (Zucchini)cpemedB135
MELO3C007552.2Cucurbita pepo (Zucchini)cpemedB288
MELO3C007552.2Cucurbita pepo (Zucchini)cpemedB648
MELO3C007552.2Cucurbita pepo (Zucchini)cpemedB772
MELO3C007552.2Cucurbita pepo (Zucchini)cpemedB873
MELO3C007552.2Wild cucumber (PI 183967)cpimedB317
MELO3C007552.2Wild cucumber (PI 183967)cpimedB561
MELO3C007552.2Bottle gourd (USVL1VR-Ls)lsimedB127
MELO3C007552.2Melon (DHL92) v3.6.1medmedB059
MELO3C007552.2Melon (DHL92) v3.6.1medmedB153
MELO3C007552.2Bottle gourd (USVL1VR-Ls)lsimedB349
MELO3C007552.2Watermelon (Charleston Gray)medwcgB513
MELO3C007552.2Watermelon (97103) v1medwmB559
MELO3C007552.2Watermelon (97103) v1medwmB579
MELO3C007552.2Silver-seed gourdcarmedB0192
MELO3C007552.2Silver-seed gourdcarmedB0418
MELO3C007552.2Silver-seed gourdcarmedB0818
MELO3C007552.2Cucumber (Chinese Long) v3cucmedB575