Bhi03G001450 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi03G001450
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Precursor of CEP3
Location	chr3 : 39431082 .. 39431363 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCACTCGGTTTTTAACTTACTTATTTGTGTTCATGATTTTGTCTCACCAACTTGTTTTGATTGAAGGAAGGAGGTTGAAAGTAAAGAAAAATGGGCTGCGTTGTGGGAGTTGCATGACTCCCGACACCCCAAAAACCATAACCAAATCAGACGAAGCACAAAAAACCATTAATAATAAGCTGCACCACAGAATTGCCGATGGCTTTGTCGATGCCTTTCGCCCCACCACTCCCGGCCATAGTCCCGGCGTTGGTCACTCCATTCAAAACCGATAA

mRNA sequence

ATGGCCGCCACTCGGTTTTTAACTTACTTATTTGTGTTCATGATTTTGTCTCACCAACTTGTTTTGATTGAAGGAAGGAGGTTGAAAGTAAAGAAAAATGGGCTGCGTTGTGGGAGTTGCATGACTCCCGACACCCCAAAAACCATAACCAAATCAGACGAAGCACAAAAAACCATTAATAATAAGCTGCACCACAGAATTGCCGATGGCTTTGTCGATGCCTTTCGCCCCACCACTCCCGGCCATAGTCCCGGCGTTGGTCACTCCATTCAAAACCGATAA

Coding sequence (CDS)

ATGGCCGCCACTCGGTTTTTAACTTACTTATTTGTGTTCATGATTTTGTCTCACCAACTTGTTTTGATTGAAGGAAGGAGGTTGAAAGTAAAGAAAAATGGGCTGCGTTGTGGGAGTTGCATGACTCCCGACACCCCAAAAACCATAACCAAATCAGACGAAGCACAAAAAACCATTAATAATAAGCTGCACCACAGAATTGCCGATGGCTTTGTCGATGCCTTTCGCCCCACCACTCCCGGCCATAGTCCCGGCGTTGGTCACTCCATTCAAAACCGATAA

Protein sequence

MAATRFLTYLFVFMILSHQLVLIEGRRLKVKKNGLRCGSCMTPDTPKTITKSDEAQKTINNKLHHRIADGFVDAFRPTTPGHSPGVGHSIQNR

Homology

[Close]

BLAST of Bhi03G001450 vs. Swiss-Prot
Match: sp|P0DN97|PCEP8_ARATH (Precursor of CEP8 OS=Arabidopsis thaliana OX=3702 GN=CEP8 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.3e-04
Identity = 24/82 (29.27%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 7  LTYLFVFMILSHQLVLIEGRRLKVKKNGLRCGSCMTPDTPKTITKSDEAQKTINNKLHHR 66
          ++ L + +++SH+++  E R L+  +  ++  +    +    +     + KT  +K  H 
Sbjct: 11 ISLLIIAILVSHEIIPTEARHLRTHRKSIKNSTLTVHEGAGGLRTGGGSVKTDISKEEHG 70

Query: 67 IADGFVDAFRPTTPGHSPGVGH 89
               VD FRPTTPG+SPG+GH
Sbjct: 71 -----VDEFRPTTPGNSPGIGH 87

[Close]

BLAST of Bhi03G001450 vs. Swiss-Prot
Match: sp|O80460|PCEP3_ARATH (Precursor of CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.1e-04
Identity = 31/96 (32.29%), Postives = 45/96 (46.88%), Query Frame = 0


Query: 1  MAATRFLTYLFVFMILSHQLVLIEGRRLK----VKKNGLRCGSCMTPDTPKTITKSDEAQ 60
          MA      + F+F +L+  +  IEGR+L          +R G  +   +P T        
Sbjct: 1  MATINVYVFAFIF-LLTISVGSIEGRKLTKFTVTTSEEIRAGGSVLSSSPPT-------- 60

Query: 61 KTINNKLHHRIADGFVDAFRPTTPGHSPGVGHSIQN 93
          + + +   H      VD FRPT PGHSPG+GHS+ N
Sbjct: 61 EPLESPPSHG-----VDTFRPTEPGHSPGIGHSVHN 82

[Close]

BLAST of Bhi03G001450 vs. TAIR10
Match: AT2G23440.1 (unknown protein)

HSP 1 Score: 45.1 bits (105), Expect = 2.8e-05
Identity = 31/96 (32.29%), Postives = 45/96 (46.88%), Query Frame = 0


Query: 1  MAATRFLTYLFVFMILSHQLVLIEGRRLK----VKKNGLRCGSCMTPDTPKTITKSDEAQ 60
          MA      + F+F +L+  +  IEGR+L          +R G  +   +P T        
Sbjct: 1  MATINVYVFAFIF-LLTISVGSIEGRKLTKFTVTTSEEIRAGGSVLSSSPPT-------- 60

Query: 61 KTINNKLHHRIADGFVDAFRPTTPGHSPGVGHSIQN 93
          + + +   H      VD FRPT PGHSPG+GHS+ N
Sbjct: 61 EPLESPPSHG-----VDTFRPTEPGHSPGIGHSVHN 82

[Close]

BLAST of Bhi03G001450 vs. TAIR10
Match: AT3G50610.1 (unknown protein)

HSP 1 Score: 42.0 bits (97), Expect = 2.4e-04
Identity = 18/42 (42.86%), Postives = 22/42 (52.38%), Query Frame = 0


Query: 51  KSDEAQKTINNKLHHRIADGFVDAFRPTTPGHSPGVGHSIQN 93
           K  E +K +   +      G  D F PT+PGHSPGVGH   N
Sbjct: 60  KPTEGRKLLKTNVQDHFKTGSTDDFAPTSPGHSPGVGHKKGN 101

[Close]

BLAST of Bhi03G001450 vs. TrEMBL
Match: tr|A0A0A0KIB5|A0A0A0KIB5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490780 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.4e-38
Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1  MAATRFLTYLFVFMILSHQLVLIEGRRLKVKKNGLRCGSCMTPDTPKTITKS-DEAQKTI 60
          MAATR LTY F+F+ILSH LV+IEGRRLKVKKNGLRCG+CMTP TPKTITKS +EAQK+ 
Sbjct: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST 60

Query: 61 NNKLHHRIADGFVDAFRPTTPGHSPGVGHSIQNR 94
          NNKLHHRIADG+VDAFRPTTPGHSPGVGHSIQNR
Sbjct: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 94

[Close]

BLAST of Bhi03G001450 vs. TrEMBL
Match: tr|A0A2G5DS81|A0A2G5DS81_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01500130v1 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.4e-12
Identity = 42/85 (49.41%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 10 LFVFMILSHQLVLIEGRRLKVKKNGLRCGSCMTPDTPKTITKSDEAQKTINNKLHHRIAD 69
          L + ++LSH+++  EGR LK+KK    C  C + +T +   +SD  QKT  + +HH+I  
Sbjct: 12 LLLVLVLSHEMIHTEGRHLKIKKR-TACVKCSSSNTVRGKKESD-GQKT--SDVHHKITP 71

Query: 70 --GFVDAFRPTTPGHSPGVGHSIQN 93
            GFV+AFRPTTPGHSPG+GHSIQ+
Sbjct: 72 MAGFVEAFRPTTPGHSPGIGHSIQH 92

[Close]

BLAST of Bhi03G001450 vs. TrEMBL
Match: tr|M5W563|M5W563_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G136000 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-11
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 11 FVFMILSHQLVLIEGRRLKVKKNGLRCGSCMTPDTPKTITKSDEAQKTINNKLHHRIADG 70
          F+ MI SH+L+ IEGR L V K+ L+C  C++PD   +  + DE    + +      + G
Sbjct: 12 FLLMIFSHELICIEGRNLNVSKD-LKCVKCLSPDPKTSAGEVDEEHTLVESP-----SPG 71

Query: 71 FVDAFRPTTPGHSPGVGHSIQN 93
           V+AFRPTTPGHSPGVGH++ N
Sbjct: 72 HVEAFRPTTPGHSPGVGHAVHN 87

[Close]

BLAST of Bhi03G001450 vs. TrEMBL
Match: tr|V4SPP4|V4SPP4_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027106mg PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.5e-11
Identity = 44/96 (45.83%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 1  MAATRFLTYLFVFMILSHQLVLIEGRRLKVKKNGLRCGSCMTPDTPKTITKSDEAQKTIN 60
          MA        F+ MI SH+L  +EGR LK+ K+ L+C  C+   +P   +KS    +  N
Sbjct: 1  MANVSCTCLFFILMIFSHELCDVEGRNLKISKS-LKCAKCLL--SPDGQSKSKPIARDTN 60

Query: 61 NK------LHH--RIADGFVDAFRPTTPGHSPGVGH 89
          N       LHH  +  +GFVDAFRPTTPGHSPGVGH
Sbjct: 61 NHDASPSLLHHGTKTTEGFVDAFRPTTPGHSPGVGH 93

[Close]

BLAST of Bhi03G001450 vs. TrEMBL
Match: tr|A0A067GI40|A0A067GI40_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g045305mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.3e-11
Identity = 43/94 (45.74%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 1  MAATRFLTYLFVFMILSHQLVLIEGRRLKVKKNGLRCGSC-MTPDTP---KTITKSDEAQ 60
          MA        F+ MI SH+L  +EGR LK+ K+ L+C  C ++PD     K I +     
Sbjct: 1  MANVSCTCLFFILMIFSHELCDVEGRNLKISKS-LKCAKCLLSPDGQSKFKPIARDTNNH 60

Query: 61 KTINNKLHH--RIADGFVDAFRPTTPGHSPGVGH 89
              + LHH  +  +GFVDAFRPTTPGHSPGVGH
Sbjct: 61 DASPSLLHHGTKTTEGFVDAFRPTTPGHSPGVGH 93

[Close]

BLAST of Bhi03G001450 vs. NCBI nr
Match: KGN48514.1 (hypothetical protein Csa_6G490780 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 2.1e-38
Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1  MAATRFLTYLFVFMILSHQLVLIEGRRLKVKKNGLRCGSCMTPDTPKTITKS-DEAQKTI 60
          MAATR LTY F+F+ILSH LV+IEGRRLKVKKNGLRCG+CMTP TPKTITKS +EAQK+ 
Sbjct: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST 60

Query: 61 NNKLHHRIADGFVDAFRPTTPGHSPGVGHSIQNR 94
          NNKLHHRIADG+VDAFRPTTPGHSPGVGHSIQNR
Sbjct: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 94

[Close]

BLAST of Bhi03G001450 vs. NCBI nr
Match: PIA46381.1 (hypothetical protein AQUCO_01500130v1 [Aquilegia coerulea])

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 42/85 (49.41%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 10 LFVFMILSHQLVLIEGRRLKVKKNGLRCGSCMTPDTPKTITKSDEAQKTINNKLHHRIAD 69
          L + ++LSH+++  EGR LK+KK    C  C + +T +   +SD  QKT  + +HH+I  
Sbjct: 12 LLLVLVLSHEMIHTEGRHLKIKKR-TACVKCSSSNTVRGKKESD-GQKT--SDVHHKITP 71

Query: 70 --GFVDAFRPTTPGHSPGVGHSIQN 93
            GFV+AFRPTTPGHSPG+GHSIQ+
Sbjct: 72 MAGFVEAFRPTTPGHSPGIGHSIQH 92

[Close]

BLAST of Bhi03G001450 vs. NCBI nr
Match: ONH96545.1 (hypothetical protein PRUPE_7G136000 [Prunus persica])

HSP 1 Score: 77.8 bits (190), Expect = 2.2e-11
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 11 FVFMILSHQLVLIEGRRLKVKKNGLRCGSCMTPDTPKTITKSDEAQKTINNKLHHRIADG 70
          F+ MI SH+L+ IEGR L V K+ L+C  C++PD   +  + DE    + +      + G
Sbjct: 12 FLLMIFSHELICIEGRNLNVSKD-LKCVKCLSPDPKTSAGEVDEEHTLVESP-----SPG 71

Query: 71 FVDAFRPTTPGHSPGVGHSIQN 93
           V+AFRPTTPGHSPGVGH++ N
Sbjct: 72 HVEAFRPTTPGHSPGVGHAVHN 87

[Close]

BLAST of Bhi03G001450 vs. NCBI nr
Match: PQQ18182.1 (hypothetical protein Pyn_35999 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 76.3 bits (186), Expect = 6.3e-11
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 11 FVFMILSHQLVLIEGRRLKVKKNGLRCGSCMTPDTPKTITKSDEAQKTINNKLHHRIAD- 70
          F+ MI SH+L+ IEGR +KV K+ L+C  C++PD     T++ EA         H +A+ 
Sbjct: 12 FLLMIFSHELICIEGRNVKVNKD-LKCVKCLSPDAK---TRAGEAYG------EHTVAES 71

Query: 71 ---GFVDAFRPTTPGHSPGVGHSIQN 93
             G V+AFRPTTPGHSPGVGH++ N
Sbjct: 72 PSPGHVEAFRPTTPGHSPGVGHAVHN 87

[Close]

BLAST of Bhi03G001450 vs. NCBI nr
Match: ESR39096.1 (hypothetical protein CICLE_v10027106mg [Citrus clementina])

HSP 1 Score: 75.9 bits (185), Expect = 8.2e-11
Identity = 44/96 (45.83%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 1  MAATRFLTYLFVFMILSHQLVLIEGRRLKVKKNGLRCGSCMTPDTPKTITKSDEAQKTIN 60
          MA        F+ MI SH+L  +EGR LK+ K+ L+C  C+   +P   +KS    +  N
Sbjct: 1  MANVSCTCLFFILMIFSHELCDVEGRNLKISKS-LKCAKCLL--SPDGQSKSKPIARDTN 60

Query: 61 NK------LHH--RIADGFVDAFRPTTPGHSPGVGH 89
          N       LHH  +  +GFVDAFRPTTPGHSPGVGH
Sbjct: 61 NHDASPSLLHHGTKTTEGFVDAFRPTTPGHSPGVGH 93

The following BLAST results are available for this feature:

BLAST of Bhi03G001450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P0DN97\|PCEP8_ARATH	2.3e-04	29.27	Precursor of CEP8 OS=Arabidopsis thaliana OX=3702 GN=CEP8 PE=2 SV=1	[more]
sp\|O80460\|PCEP3_ARATH	5.1e-04	32.29	Precursor of CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=1 SV=1	[more]

BLAST of Bhi03G001450 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G23440.1	2.8e-05	32.29	unknown protein	[more]
AT3G50610.1	2.4e-04	42.86	unknown protein	[more]

BLAST of Bhi03G001450 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KIB5\|A0A0A0KIB5_CUCSA	1.4e-38	86.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490780 PE=4 SV=1	[more]
tr\|A0A2G5DS81\|A0A2G5DS81_AQUCA	8.4e-12	49.41	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01500130v1 PE=4...	[more]
tr\|M5W563\|M5W563_PRUPE	1.4e-11	46.34	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G136000 PE=4 SV=1	[more]
tr\|V4SPP4\|V4SPP4_9ROSI	5.5e-11	45.83	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027106mg PE=4 ...	[more]
tr\|A0A067GI40\|A0A067GI40_CITSI	9.3e-11	45.74	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g045305mg PE=4 SV=1	[more]

BLAST of Bhi03G001450 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48514.1	2.1e-38	86.17	hypothetical protein Csa_6G490780 [Cucumis sativus]	[more]
PIA46381.1	1.3e-11	49.41	hypothetical protein AQUCO_01500130v1 [Aquilegia coerulea]	[more]
ONH96545.1	2.2e-11	46.34	hypothetical protein PRUPE_7G136000 [Prunus persica]	[more]
PQQ18182.1	6.3e-11	47.67	hypothetical protein Pyn_35999 [Prunus yedoensis var. nudiflora]	[more]
ESR39096.1	8.2e-11	45.83	hypothetical protein CICLE_v10027106mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0048364	root development

Vocabulary: **INTERPRO**
Term	Definition
IPR033250	CEP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902025	nitrate import
biological_process	GO:1901371	regulation of leaf morphogenesis
biological_process	GO:2000280	regulation of root development
biological_process	GO:0007165	signal transduction
biological_process	GO:0048364	root development
biological_process	GO:0006995	cellular response to nitrogen starvation
biological_process	GO:0032774	RNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0048046	apoplast
cellular_component	GO:0016020	membrane
molecular_function	GO:0005179	hormone activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M001450	Bhi03M001450	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..93
None	No IPR available	PANTHER	PTHR33348:SF7	SUBFAMILY NOT NAMED	coord: 5..92
IPR033250	C-terminally encoded peptide	PANTHER	PTHR33348	FAMILY NOT NAMED	coord: 5..92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi03G001450	Csa6G490780	Cucumber (Chinese Long) v2	cuwgoB630
Bhi03G001450	MELO3C007552	Melon (DHL92) v3.5.1	mewgoB653
Bhi03G001450	ClCG01G016730	Watermelon (Charleston Gray)	wcgwgoB228
Bhi03G001450	CSPI06G28020	Wild cucumber (PI 183967)	cpiwgoB636
Bhi03G001450	CmaCh07G007120	Cucurbita maxima (Rimu)	cmawgoB1060
Bhi03G001450	CmoCh07G007280	Cucurbita moschata (Rifu)	cmowgoB1053
Bhi03G001450	Cp4.1LG10g02520	Cucurbita pepo (Zucchini)	cpewgoB0099
Bhi03G001450	Cp4.1LG19g11300	Cucurbita pepo (Zucchini)	cpewgoB0609
Bhi03G001450	CsGy6G027470	Cucumber (Gy14) v2	cgybwgoB600
Bhi03G001450	MELO3C007552.2	Melon (DHL92) v3.6.1	medwgoB660
Bhi03G001450	CsaV3_6G043150	Cucumber (Chinese Long) v3	cucwgoB650

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi03G001450	Wax gourd	wgowgoB074
Bhi03G001450	Wax gourd	wgowgoB101
Bhi03G001450	Cucumber (Gy14) v1	cgywgoB155
Bhi03G001450	Cucumber (Gy14) v2	cgybwgoB657
Bhi03G001450	Cucurbita maxima (Rimu)	cmawgoB0790
Bhi03G001450	Cucurbita maxima (Rimu)	cmawgoB0953
Bhi03G001450	Cucurbita moschata (Rifu)	cmowgoB0785
Bhi03G001450	Cucurbita pepo (Zucchini)	cpewgoB0150
Bhi03G001450	Wild cucumber (PI 183967)	cpiwgoB698
Bhi03G001450	Cucumber (Chinese Long) v3	cucwgoB710
Bhi03G001450	Cucumber (Chinese Long) v2	cuwgoB686
Bhi03G001450	Bottle gourd (USVL1VR-Ls)	lsiwgoB171
Bhi03G001450	Watermelon (Charleston Gray)	wcgwgoB314
Bhi03G001450	Watermelon (97103) v2	wgowmbB403
Bhi03G001450	Watermelon (97103) v2	wgowmbB419
Bhi03G001450	Watermelon (97103) v1	wgowmB434
Bhi03G001450	Silver-seed gourd	carwgoB0235
Bhi03G001450	Silver-seed gourd	carwgoB0489
Bhi03G001450	Silver-seed gourd	carwgoB0944