CsGy6G027470 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G027470
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	transmembrane protein
Location	Chr6 : 26635603 .. 26635887 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCACTCGGGTTTTAACTTACTTCTTTCTATTCATCATCTTGTCTCACCATCTCGTTGTTATTGAAGGAAGGAGATTGAAAGTAAAAAAAAATGGGCTACGTTGTGGAACTTGCATGACTCCCACCACTCCAAAAACCATAACCAAATCAGAAGAGGAAGCACAAAAAAGCACTAATAATAAGCTCCACCACAGAATTGCCGATGGCTATGTGGATGCCTTCCGCCCCACCACCCCCGGCCATAGTCCCGGCGTTGGTCACTCCATTCAAAACCGATAA

mRNA sequence

ATGGCCGCCACTCGGGTTTTAACTTACTTCTTTCTATTCATCATCTTGTCTCACCATCTCGTTGTTATTGAAGGAAGGAGATTGAAAGTAAAAAAAAATGGGCTACGTTGTGGAACTTGCATGACTCCCACCACTCCAAAAACCATAACCAAATCAGAAGAGGAAGCACAAAAAAGCACTAATAATAAGCTCCACCACAGAATTGCCGATGGCTATGTGGATGCCTTCCGCCCCACCACCCCCGGCCATAGTCCCGGCGTTGGTCACTCCATTCAAAACCGATAA

Coding sequence (CDS)

ATGGCCGCCACTCGGGTTTTAACTTACTTCTTTCTATTCATCATCTTGTCTCACCATCTCGTTGTTATTGAAGGAAGGAGATTGAAAGTAAAAAAAAATGGGCTACGTTGTGGAACTTGCATGACTCCCACCACTCCAAAAACCATAACCAAATCAGAAGAGGAAGCACAAAAAAGCACTAATAATAAGCTCCACCACAGAATTGCCGATGGCTATGTGGATGCCTTCCGCCCCACCACCCCCGGCCATAGTCCCGGCGTTGGTCACTCCATTCAAAACCGATAA

Protein sequence

MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKSTNNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR

Homology

[Close]

BLAST of CsGy6G027470 vs. NCBI nr
Match: KGN48514.1 (hypothetical protein Csa_6G490780 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 4.7e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST 60
          MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST
Sbjct: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST 60

Query: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 95
          NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR
Sbjct: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 94

[Close]

BLAST of CsGy6G027470 vs. NCBI nr
Match: PIA46381.1 (hypothetical protein AQUCO_01500130v1 [Aquilegia coerulea])

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 12 LFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKSTNNKLHHRIAD- 71
          L ++LSH ++  EGR LK+KK    C  C +  T +   K E + QK+++  +HH+I   
Sbjct: 14 LVLVLSHEMIHTEGRHLKIKKR-TACVKCSSSNTVR--GKKESDGQKTSD--VHHKITPM 73

Query: 72 -GYVDAFRPTTPGHSPGVGHSIQN 94
           G+V+AFRPTTPGHSPG+GHSIQ+
Sbjct: 74 AGFVEAFRPTTPGHSPGIGHSIQH 92

[Close]

BLAST of CsGy6G027470 vs. NCBI nr
Match: ONH96545.1 (hypothetical protein PRUPE_7G136000 [Prunus persica])

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 10 FFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKSTNNKLHHRIA 69
          FFL +I SH L+ IEGR L V K+ L+C  C++P  PKT     +E      + L    +
Sbjct: 11 FFLLMIFSHELICIEGRNLNVSKD-LKCVKCLSP-DPKTSAGEVDE-----EHTLVESPS 70

Query: 70 DGYVDAFRPTTPGHSPGVGHSIQN 94
           G+V+AFRPTTPGHSPGVGH++ N
Sbjct: 71 PGHVEAFRPTTPGHSPGVGHAVHN 87

[Close]

BLAST of CsGy6G027470 vs. NCBI nr
Match: ESR39096.1 (hypothetical protein CICLE_v10027106mg [Citrus clementina])

HSP 1 Score: 73.9 bits (180), Expect = 3.2e-10
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 0


Query: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST 60
          MA       FF+ +I SH L  +EGR LK+ K+ L+C  C+   +P   +KS+  A+ + 
Sbjct: 1  MANVSCTCLFFILMIFSHELCDVEGRNLKISKS-LKCAKCL--LSPDGQSKSKPIARDTN 60

Query: 61 NNK-----LHH--RIADGYVDAFRPTTPGHSPGVGH 90
          N+      LHH  +  +G+VDAFRPTTPGHSPGVGH
Sbjct: 61 NHDASPSLLHHGTKTTEGFVDAFRPTTPGHSPGVGH 93

[Close]

BLAST of CsGy6G027470 vs. NCBI nr
Match: PNT27019.1 (hypothetical protein POPTR_007G041500v3 [Populus trichocarpa])

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST 60
          MA       FFL ++LS++++ +EGR L++KK       C      K+I ++      S 
Sbjct: 1  MANAACTCLFFLLMLLSYNILCVEGRSLELKKALKHAKRC--NPGGKSIERNTLLNSASP 60

Query: 61 NNKLHHRI--ADGYVDAFRPTTPGHSPGVGHSIQN 94
          +N LHH +  +DG+V+AFRPT PGHSPGVGHS+ N
Sbjct: 61 SNHLHHTVKTSDGFVEAFRPTNPGHSPGVGHSVHN 93

[Close]

BLAST of CsGy6G027470 vs. TAIR10
Match: AT2G23440.1 (unknown protein)

HSP 1 Score: 45.1 bits (105), Expect = 2.9e-05
Identity = 33/93 (35.48%), Postives = 43/93 (46.24%), Query Frame = 0


Query: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST 60
          MA   V  + F+F +L+  +  IEGR+L          T  T TT + I         S 
Sbjct: 1  MATINVYVFAFIF-LLTISVGSIEGRKL----------TKFTVTTSEEIRAGGSVLSSSP 60

Query: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQN 94
            +         VD FRPT PGHSPG+GHS+ N
Sbjct: 61 PTEPLESPPSHGVDTFRPTEPGHSPGIGHSVHN 82

[Close]

BLAST of CsGy6G027470 vs. Swiss-Prot
Match: sp|O80460|PCEP3_ARATH (Precursor of CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.2e-04
Identity = 33/93 (35.48%), Postives = 43/93 (46.24%), Query Frame = 0


Query: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST 60
          MA   V  + F+F +L+  +  IEGR+L          T  T TT + I         S 
Sbjct: 1  MATINVYVFAFIF-LLTISVGSIEGRKL----------TKFTVTTSEEIRAGGSVLSSSP 60

Query: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQN 94
            +         VD FRPT PGHSPG+GHS+ N
Sbjct: 61 PTEPLESPPSHGVDTFRPTEPGHSPGIGHSVHN 82

[Close]

BLAST of CsGy6G027470 vs. TrEMBL
Match: tr|A0A0A0KIB5|A0A0A0KIB5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490780 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.1e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST 60
          MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST
Sbjct: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST 60

Query: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 95
          NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR
Sbjct: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 94

[Close]

BLAST of CsGy6G027470 vs. TrEMBL
Match: tr|A0A2G5DS81|A0A2G5DS81_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01500130v1 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.4e-11
Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 12 LFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKSTNNKLHHRIAD- 71
          L ++LSH ++  EGR LK+KK    C  C +  T +   K E + QK+++  +HH+I   
Sbjct: 14 LVLVLSHEMIHTEGRHLKIKKR-TACVKCSSSNTVR--GKKESDGQKTSD--VHHKITPM 73

Query: 72 -GYVDAFRPTTPGHSPGVGHSIQN 94
           G+V+AFRPTTPGHSPG+GHSIQ+
Sbjct: 74 AGFVEAFRPTTPGHSPGIGHSIQH 92

[Close]

BLAST of CsGy6G027470 vs. TrEMBL
Match: tr|M5W563|M5W563_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G136000 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 10 FFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKSTNNKLHHRIA 69
          FFL +I SH L+ IEGR L V K+ L+C  C++P  PKT     +E      + L    +
Sbjct: 11 FFLLMIFSHELICIEGRNLNVSKD-LKCVKCLSP-DPKTSAGEVDE-----EHTLVESPS 70

Query: 70 DGYVDAFRPTTPGHSPGVGHSIQN 94
           G+V+AFRPTTPGHSPGVGH++ N
Sbjct: 71 PGHVEAFRPTTPGHSPGVGHAVHN 87

[Close]

BLAST of CsGy6G027470 vs. TrEMBL
Match: tr|V4SPP4|V4SPP4_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027106mg PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-10
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 0


Query: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST 60
          MA       FF+ +I SH L  +EGR LK+ K+ L+C  C+   +P   +KS+  A+ + 
Sbjct: 1  MANVSCTCLFFILMIFSHELCDVEGRNLKISKS-LKCAKCL--LSPDGQSKSKPIARDTN 60

Query: 61 NNK-----LHH--RIADGYVDAFRPTTPGHSPGVGH 90
          N+      LHH  +  +G+VDAFRPTTPGHSPGVGH
Sbjct: 61 NHDASPSLLHHGTKTTEGFVDAFRPTTPGHSPGVGH 93

[Close]

BLAST of CsGy6G027470 vs. TrEMBL
Match: tr|U5G8B4|U5G8B4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G041500v3 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.0e-10
Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST 60
          MA       FFL ++LS++++ +EGR L++KK       C      K+I ++      S 
Sbjct: 1  MANAACTCLFFLLMLLSYNILCVEGRSLELKKALKHAKRC--NPGGKSIERNTLLNSASP 60

Query: 61 NNKLHHRI--ADGYVDAFRPTTPGHSPGVGHSIQN 94
          +N LHH +  +DG+V+AFRPT PGHSPGVGHS+ N
Sbjct: 61 SNHLHHTVKTSDGFVEAFRPTNPGHSPGVGHSVHN 93

The following BLAST results are available for this feature:

BLAST of CsGy6G027470 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48514.1	4.7e-46	100.00	hypothetical protein Csa_6G490780 [Cucumis sativus]	[more]
PIA46381.1	1.4e-10	47.62	hypothetical protein AQUCO_01500130v1 [Aquilegia coerulea]	[more]
ONH96545.1	1.9e-10	48.81	hypothetical protein PRUPE_7G136000 [Prunus persica]	[more]
ESR39096.1	3.2e-10	44.79	hypothetical protein CICLE_v10027106mg [Citrus clementina]	[more]
PNT27019.1	1.2e-09	42.11	hypothetical protein POPTR_007G041500v3 [Populus trichocarpa]	[more]

BLAST of CsGy6G027470 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G23440.1	2.9e-05	35.48	unknown protein	[more]

BLAST of CsGy6G027470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O80460\|PCEP3_ARATH	5.2e-04	35.48	Precursor of CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=1 SV=1	[more]

BLAST of CsGy6G027470 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KIB5\|A0A0A0KIB5_CUCSA	3.1e-46	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490780 PE=4 SV=1	[more]
tr\|A0A2G5DS81\|A0A2G5DS81_AQUCA	9.4e-11	47.62	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01500130v1 PE=4...	[more]
tr\|M5W563\|M5W563_PRUPE	1.2e-10	48.81	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G136000 PE=4 SV=1	[more]
tr\|V4SPP4\|V4SPP4_9ROSI	2.1e-10	44.79	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027106mg PE=4 ...	[more]
tr\|U5G8B4\|U5G8B4_POPTR	8.0e-10	42.11	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G041500v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0048364	root development

Vocabulary: **INTERPRO**
Term	Definition
IPR033250	CEP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048364	root development
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G027470.1	CsGy6G027470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..94
None	No IPR available	PANTHER	PTHR33348:SF7	SUBFAMILY NOT NAMED	coord: 5..93
IPR033250	C-terminally encoded peptide	PANTHER	PTHR33348	FAMILY NOT NAMED	coord: 5..93

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G027470	Csa6G490780	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G027470	MELO3C007552	Melon (DHL92) v3.5.1	cgybmeB444
CsGy6G027470	ClCG01G016730	Watermelon (Charleston Gray)	cgybwcgB399
CsGy6G027470	CSPI06G28020	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G027470	CmaCh07G007120	Cucurbita maxima (Rimu)	cgybcmaB861
CsGy6G027470	CmoCh07G007280	Cucurbita moschata (Rifu)	cgybcmoB843
CsGy6G027470	Cp4.1LG19g11300	Cucurbita pepo (Zucchini)	cgybcpeB810
CsGy6G027470	Cp4.1LG10g02520	Cucurbita pepo (Zucchini)	cgybcpeB710
CsGy6G027470	MELO3C007552.2	Melon (DHL92) v3.6.1	cgybmedB440
CsGy6G027470	CsaV3_6G043150	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G027470	Bhi03G001450	Wax gourd	cgybwgoB600

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G027470	Watermelon (Charleston Gray)	cgybwcgB418
CsGy6G027470	Watermelon (97103) v1	cgybwmB495
CsGy6G027470	Watermelon (97103) v1	cgybwmB468
CsGy6G027470	Wild cucumber (PI 183967)	cgybcpiB276
CsGy6G027470	Silver-seed gourd	carcgybB0198
CsGy6G027470	Silver-seed gourd	carcgybB0418
CsGy6G027470	Silver-seed gourd	carcgybB0799
CsGy6G027470	Cucumber (Chinese Long) v3	cgybcucB264
CsGy6G027470	Cucumber (Chinese Long) v3	cgybcucB308
CsGy6G027470	Watermelon (97103) v2	cgybwmbB394
CsGy6G027470	Wax gourd	cgybwgoB576
CsGy6G027470	Cucumber (Gy14) v2	cgybcgybB068
CsGy6G027470	Cucumber (Gy14) v2	cgybcgybB129
CsGy6G027470	Cucurbita maxima (Rimu)	cgybcmaB699
CsGy6G027470	Cucurbita maxima (Rimu)	cgybcmaB831
CsGy6G027470	Cucurbita maxima (Rimu)	cgybcmaB848
CsGy6G027470	Cucurbita moschata (Rifu)	cgybcmoB811
CsGy6G027470	Cucurbita pepo (Zucchini)	cgybcpeB719
CsGy6G027470	Cucurbita pepo (Zucchini)	cgybcpeB820
CsGy6G027470	Cucurbita pepo (Zucchini)	cgybcpeB868
CsGy6G027470	Bottle gourd (USVL1VR-Ls)	cgyblsiB388
CsGy6G027470	Bottle gourd (USVL1VR-Ls)	cgyblsiB398
CsGy6G027470	Bottle gourd (USVL1VR-Ls)	cgyblsiB422
CsGy6G027470	Melon (DHL92) v3.5.1	cgybmeB378
CsGy6G027470	Melon (DHL92) v3.5.1	cgybmeB443
CsGy6G027470	Melon (DHL92) v3.6.1	cgybmedB378
CsGy6G027470	Melon (DHL92) v3.6.1	cgybmedB438