MELO3C006643.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C006643.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionE3 ubiquitin-protein ligase
Locationchr06 : 4766411 .. 4767299 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATGGAAGATCTTACCGAAGAAGAAAGACGTGCTCTACGAGGAAGCAAGTTCGCTCCTCTCCCATCGCAATCCACTTCTTCTCGATCTCACCCAAGGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTATCTGGGTATCTAGGGTTTTTTCTTCTAATCAATGGGGTTTCTATGCAAAGGTTGGCTCATCCAGGTGGACCATTGAAAACCAACAAAGCCGCGGCTCTCGCTAAGTTTCTTCACCGGAAATTGCACCAAGATCCTAATGCTTTCTCTTCTATTAATCCCCAGATTTTGGACCTTGCTGTTCGAAATGCCAAAGCCTCTGTTCATTCCAGTTCGTATTTTCTCCCACCCTTTTGTATTTCTATTTTTCTTTGTTGAGATCATGAATGCGTTGGATACGGAACAGAATTAACTTAATCTAATCAAATCAAAGTTTTGTGTGTGTTTTTCTTCTCTATCTATATGTATATATATCTATGATGATGTTTCAGGTGGTACAAATATTCGGCATGTGGACACATTTGATGACCCTGAGGTTTGCTCTATTCAGAATTCTTGAATCTAATGTCTTAAATCATCATTGTAGTAACAATTTGACTGATGATAATGATGGATGAATGATGATGATGATTCAGGCTTCTTTTGATGAAGGGGAATCTATGAATTCTGAGCCTAAAAAACAAAAGAAAAAGAACAAGAAGAAGAAAAATAAAAATAAGAAGAACAAAAGGCAAAAGGTTGAAATTCTCCTTCTTCAAGCTCTATATAATCTTAGTGTTGCCTCAGTTTTTCCTTATGTTGAGATTGTGCACTGCAGATTGTTGAGGACTCCGAGTGTGGCGTTGGAAAAAACCCAAACCCAAAAAGAAGTTGA

mRNA sequence

ATGGTGATGGAAGATCTTACCGAAGAAGAAAGACGTGCTCTACGAGGAAGCAAGTTCGCTCCTCTCCCATCGCAATCCACTTCTTCTCGATCTCACCCAAGGTTGGCTCATCCAGGTGGACCATTGAAAACCAACAAAGCCGCGGCTCTCGCTAAGTTTCTTCACCGGAAATTGCACCAAGATCCTAATGCTTTCTCTTCTATTAATCCCCAGATTTTGGACCTTGCTGTTCGAAATGCCAAAGCCTCTGTTCATTCCAGTGGTACAAATATTCGGCATGTGGACACATTTGATGACCCTGAGGCTTCTTTTGATGAAGGGGAATCTATGAATTCTGAGCCTAAAAAACAAAAGAAAAAGAACAAGAAGAAGAAAAATAAAAATAAGAAGAACAAAAGGCAAAAGATTGTTGAGGACTCCGAGTGTGGCGTTGGAAAAAACCCAAACCCAAAAAGAAGTTGA

Coding sequence (CDS)

ATGGTGATGGAAGATCTTACCGAAGAAGAAAGACGTGCTCTACGAGGAAGCAAGTTCGCTCCTCTCCCATCGCAATCCACTTCTTCTCGATCTCACCCAAGGTTGGCTCATCCAGGTGGACCATTGAAAACCAACAAAGCCGCGGCTCTCGCTAAGTTTCTTCACCGGAAATTGCACCAAGATCCTAATGCTTTCTCTTCTATTAATCCCCAGATTTTGGACCTTGCTGTTCGAAATGCCAAAGCCTCTGTTCATTCCAGTGGTACAAATATTCGGCATGTGGACACATTTGATGACCCTGAGGCTTCTTTTGATGAAGGGGAATCTATGAATTCTGAGCCTAAAAAACAAAAGAAAAAGAACAAGAAGAAGAAAAATAAAAATAAGAAGAACAAAAGGCAAAAGATTGTTGAGGACTCCGAGTGTGGCGTTGGAAAAAACCCAAACCCAAAAAGAAGTTGA

Protein sequence

MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLHQDPNAFSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDPEASFDEGESMNSEPKKQKKKNKKKKNKNKKNKRQKIVEDSECGVGKNPNPKRS
BLAST of MELO3C006643.2 vs. NCBI nr
Match: XP_008438870.1 (PREDICTED: uncharacterized protein LOC103483832 [Cucumis melo])

HSP 1 Score: 246.9 bits (629), Expect = 4.4e-62
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0

Query: 1   MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLHQ 60
           MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLHQ
Sbjct: 1   MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLHQ 60

Query: 61  DPNAFSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDPEASFDEGESMXXXXXXXXXX 120
           DPNAFSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDPEASFDEGESMXXXXXXXXXX
Sbjct: 61  DPNAFSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDPEASFDEGESMXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXIVEDSECGVGKNPNPKRS 154
           XXXXXXXXXXXXXXXIVEDSECGVGKNPNPKRS
Sbjct: 121 XXXXXXXXXXXXXXXIVEDSECGVGKNPNPKRS 153

BLAST of MELO3C006643.2 vs. NCBI nr
Match: XP_004134201.1 (PREDICTED: uncharacterized protein LOC101221899 [Cucumis sativus] >KGN57091.1 hypothetical protein Csa_3G153160 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 2.8e-56
Identity = 145/151 (96.03%), Postives = 146/151 (96.69%), Query Frame = 0

Query: 1   MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLHQ 60
           MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKL+Q
Sbjct: 1   MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQ 60

Query: 61  DPNAFSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDPEASFDEGESMXXXXXXXXXX 120
           DPNA SSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDPEASFDEGESMXXXXXXXXXX
Sbjct: 61  DPNALSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDPEASFDEGESMXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXIVEDSECGVGKNPNPK 152
           XXXXXXXXXXXXXXXIVEDSECGVG  P  K
Sbjct: 121 XXXXXXXXXXXXXXXIVEDSECGVGGKPKKK 151

BLAST of MELO3C006643.2 vs. NCBI nr
Match: XP_022979960.1 (uncharacterized protein LOC111479494 [Cucurbita maxima])

HSP 1 Score: 201.4 bits (511), Expect = 2.1e-48
Identity = 133/152 (87.50%), Postives = 137/152 (90.13%), Query Frame = 0

Query: 3   MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLHQDP 62
           MEDL+EEERRALRGSKFAPLPSQ TSSRSHPRLAHPGGPLKTNKAAALAKFL RKLHQDP
Sbjct: 1   MEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDP 60

Query: 63  NAFSSINPQILDLAVRNAKASV-HSSGTNIRHVDTFDDPEASFDEGESM--XXXXXXXXX 122
           N  SSINPQIL+LAVRNAKASV  SSGTNIRHVDTFDDPEASFD+GE+M     XXXXXX
Sbjct: 61  NGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDPEASFDDGEAMNSEPKXXXXXX 120

Query: 123 XXXXXXXXXXXXXXXXIVEDSECGVGKNPNPK 152
           XXXXXXXXXXXXXXXXIVEDS CGVGK P  K
Sbjct: 121 XXXXXXXXXXXXXXXXIVEDSGCGVGKRPKKK 152

BLAST of MELO3C006643.2 vs. NCBI nr
Match: XP_022956118.1 (uncharacterized protein LOC111457905 isoform X1 [Cucurbita moschata])

HSP 1 Score: 200.7 bits (509), Expect = 3.7e-48
Identity = 136/156 (87.18%), Postives = 141/156 (90.38%), Query Frame = 0

Query: 2   VMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLHQD 61
           +MEDL+EEERRALRGSKFAPLPSQ TSSRSHPRLAHPGGPLKTNKAAALAKFL RKLHQD
Sbjct: 1   MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQD 60

Query: 62  PNAFSSINPQILDLAVRNAKASV-HSSGTNIRHVDTFDDPEASFDEGESM-----XXXXX 121
           PN  SSINPQIL+LAVRNAKASV  SSGTNIRHVDTFDDPEASFD+GE+M     XXXXX
Sbjct: 61  PNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDPEASFDDGEAMNSEPKXXXXX 120

Query: 122 XXXXXXXXXXXXXXXXXXXXIVEDSECGVGKNPNPK 152
           XXXXXXXXXXXXXXXXXXXXIVEDS CGVGK P  K
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXIVEDSGCGVGKRPKKK 156

BLAST of MELO3C006643.2 vs. NCBI nr
Match: XP_022956119.1 (uncharacterized protein LOC111457905 isoform X2 [Cucurbita moschata])

HSP 1 Score: 199.1 bits (505), Expect = 1.1e-47
Identity = 134/155 (86.45%), Postives = 139/155 (89.68%), Query Frame = 0

Query: 2   VMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLHQD 61
           +MEDL+EEERRALRGSKFAPLPSQ TSSRSHPRLAHPGGPLKTNKAAALAKFL RKLHQD
Sbjct: 1   MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQD 60

Query: 62  PNAFSSINPQILDLAVRNAKASV-HSSGTNIRHVDTFDDPEASFDEGESM----XXXXXX 121
           PN  SSINPQIL+LAVRNAKASV  SSGTNIRHVDTFDDPEASFD+GE+M     XXXXX
Sbjct: 61  PNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDPEASFDDGEAMNSEPKXXXXX 120

Query: 122 XXXXXXXXXXXXXXXXXXXIVEDSECGVGKNPNPK 152
           XXXXXXXXXXXXXXXXXXX VEDS CGVGK P  K
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXVEDSGCGVGKRPKKK 155

BLAST of MELO3C006643.2 vs. TAIR10
Match: AT5G18540.1 (unknown protein)

HSP 1 Score: 124.0 bits (310), Expect = 7.9e-29
Identity = 71/108 (65.74%), Postives = 85/108 (78.70%), Query Frame = 0

Query: 4   EDLTEEERRALRGSKFAPLPSQSTSSRSH-PRLAHPGGPLKTNKAAALAKFLHRKLHQDP 63
           E+LTE+E+RALRGSKFAPL S  +SSRS  PRLAHPGGPLKTNKAAALAKFL RKL QDP
Sbjct: 8   EELTEDEKRALRGSKFAPLTSLPSSSRSKPPRLAHPGGPLKTNKAAALAKFLERKL-QDP 67

Query: 64  NAFSSINPQILDLAVRNAKASV-----HSSGTNIRHVDTFDDPEASFD 106
           N  +SI+P +++LAV+NAK +V      SSG  I+HV +F+D E S D
Sbjct: 68  NGLASIDPALVELAVKNAKDTVISSGASSSGRRIQHVASFEDVEVSSD 114

BLAST of MELO3C006643.2 vs. TrEMBL
Match: tr|A0A1S3AY37|A0A1S3AY37_CUCME (uncharacterized protein LOC103483832 OS=Cucumis melo OX=3656 GN=LOC103483832 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.9e-62
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0

Query: 1   MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLHQ 60
           MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLHQ
Sbjct: 1   MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLHQ 60

Query: 61  DPNAFSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDPEASFDEGESMXXXXXXXXXX 120
           DPNAFSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDPEASFDEGESMXXXXXXXXXX
Sbjct: 61  DPNAFSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDPEASFDEGESMXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXIVEDSECGVGKNPNPKRS 154
           XXXXXXXXXXXXXXXIVEDSECGVGKNPNPKRS
Sbjct: 121 XXXXXXXXXXXXXXXIVEDSECGVGKNPNPKRS 153

BLAST of MELO3C006643.2 vs. TrEMBL
Match: tr|A0A0A0LAK0|A0A0A0LAK0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G153160 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.8e-56
Identity = 145/151 (96.03%), Postives = 146/151 (96.69%), Query Frame = 0

Query: 1   MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLHQ 60
           MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKL+Q
Sbjct: 1   MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQ 60

Query: 61  DPNAFSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDPEASFDEGESMXXXXXXXXXX 120
           DPNA SSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDPEASFDEGESMXXXXXXXXXX
Sbjct: 61  DPNALSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDPEASFDEGESMXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXIVEDSECGVGKNPNPK 152
           XXXXXXXXXXXXXXXIVEDSECGVG  P  K
Sbjct: 121 XXXXXXXXXXXXXXXIVEDSECGVGGKPKKK 151

BLAST of MELO3C006643.2 vs. TrEMBL
Match: tr|A0A061EW19|A0A061EW19_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_046784 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.9e-30
Identity = 77/111 (69.37%), Postives = 87/111 (78.38%), Query Frame = 0

Query: 3   MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLHQDP 62
           ME+L++EERRALRGSKFAPLPS    SRS PRLAHPGGPL TNKAAALAKFL RKL QDP
Sbjct: 6   MEELSDEERRALRGSKFAPLPSLPPPSRSQPRLAHPGGPLTTNKAAALAKFLERKL-QDP 65

Query: 63  NAFSSINPQILDLAVRNAKASV-----HSSGTNIRHVDTFDDPEASFDEGE 109
           N  SSINP +L+LAV NAKA+V      +SG  IRHVD+F D E S +EG+
Sbjct: 66  NGLSSINPDLLELAVNNAKATVFQSEASNSGRTIRHVDSFGDSEDSLEEGK 115

BLAST of MELO3C006643.2 vs. TrEMBL
Match: tr|A0A0B0NRZ7|A0A0B0NRZ7_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_04521 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-28
Identity = 76/111 (68.47%), Postives = 86/111 (77.48%), Query Frame = 0

Query: 4   EDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLHQDPN 63
           E+L+EEER+ALRGSKFAPLP  S S    PRLAHPGGPL TNKAAALAKFL RKL QDPN
Sbjct: 7   EELSEEERKALRGSKFAPLPPPSLSK---PRLAHPGGPLTTNKAAALAKFLERKL-QDPN 66

Query: 64  AFSSINPQILDLAVRNAKASV-----HSSGTNIRHVDTFDDPEASFDEGES 110
             SSINPQ+L+LAV NAKA+V      SSGT +RHVD+F D E S +E +S
Sbjct: 67  GLSSINPQLLELAVNNAKATVFQSGASSSGTRVRHVDSFGDSEDSLEEAKS 113

BLAST of MELO3C006643.2 vs. TrEMBL
Match: tr|A0A1U8MMQ8|A0A1U8MMQ8_GOSHI (uncharacterized protein LOC107938284 isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107938284 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-28
Identity = 76/111 (68.47%), Postives = 86/111 (77.48%), Query Frame = 0

Query: 4   EDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLHQDPN 63
           E+L+EEER+ALRGSKFAPLP  S S    PRLAHPGGPL TNKAAALAKFL RKL QDPN
Sbjct: 7   EELSEEERKALRGSKFAPLPPPSLSK---PRLAHPGGPLTTNKAAALAKFLERKL-QDPN 66

Query: 64  AFSSINPQILDLAVRNAKASV-----HSSGTNIRHVDTFDDPEASFDEGES 110
             SSINPQ+L+LAV NAKA+V      SSGT +RHVD+F D E S +E +S
Sbjct: 67  GLSSINPQLLELAVNNAKATVFQSGASSSGTRVRHVDSFGDSEDSLEEAKS 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008438870.14.4e-62100.00PREDICTED: uncharacterized protein LOC103483832 [Cucumis melo][more]
XP_004134201.12.8e-5696.03PREDICTED: uncharacterized protein LOC101221899 [Cucumis sativus] >KGN57091.1 hy... [more]
XP_022979960.12.1e-4887.50uncharacterized protein LOC111479494 [Cucurbita maxima][more]
XP_022956118.13.7e-4887.18uncharacterized protein LOC111457905 isoform X1 [Cucurbita moschata][more]
XP_022956119.11.1e-4786.45uncharacterized protein LOC111457905 isoform X2 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT5G18540.17.9e-2965.74unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3AY37|A0A1S3AY37_CUCME2.9e-62100.00uncharacterized protein LOC103483832 OS=Cucumis melo OX=3656 GN=LOC103483832 PE=... [more]
tr|A0A0A0LAK0|A0A0A0LAK0_CUCSA1.8e-5696.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G153160 PE=4 SV=1[more]
tr|A0A061EW19|A0A061EW19_THECC3.9e-3069.37Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_046784 PE=4 SV=1[more]
tr|A0A0B0NRZ7|A0A0B0NRZ7_GOSAR1.2e-2868.47Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_04521 PE=4 SV=1[more]
tr|A0A1U8MMQ8|A0A1U8MMQ8_GOSHI1.2e-2868.47uncharacterized protein LOC107938284 isoform X2 OS=Gossypium hirsutum OX=3635 GN... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006643.2.1MELO3C006643.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 115..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..131
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..153
NoneNo IPR availablePANTHERPTHR37255FAMILY NOT NAMEDcoord: 2..151

The following gene(s) are paralogous to this gene:

None