MELO3C006232 (gene) Melon (DHL92) v3.5.1

NameMELO3C006232
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSeed maturation protein
Locationchr6 : 1895353 .. 1896398 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCAGTAAAGGAGAAGCTACACGATATGAGCGTCATGCGCAAGGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGTGAGCTCTCGATCATTTTAGGTTTACTTGTATTATTGAAAACATTTTCAATTCGAATGTCATAAATAATCATTAATTGTTTACCATCTTCCATAACTAGTACCATTTTTTTCTTGATCCTTCCCGATCTAGATGTAAAACAATCTATATTCAAATAAAAATTTAACATTTTCATCTTACCCTCAAACTATCAACCTCTTTGAGCTTTTTCTGTGAAATCAAATGAACATATCAAATCTTGATCTTCAATTTTTATTTTGTAGAATCATTTGAATTTCCTAATGGATTAACCACATATTCAAATAAATTTTTAAAATGGATCTCGGAATGATCACAATGTAATTTCTGCATGTTAAATTTTAGGAGAAAATATCAAATTAAATTTGAGATAGATATACGATCAGGTCATCGTTCTAGTCAAGATCTCACCGAAAAAGCCCTATAAATAATTTAGATTTGTTCCCAAAAAAGAGTTGGAATTTTTTTAATCTCAGGATCTAATCAAGAAATGAAACCAATAAAAAGAGTAGTCGTTCTAGTTATGAAAGATGAAAACTTTATAGGTTATTTTTTACGACTCTTCCCTTGACTCATGTTCTTCCCCGATCAAAGATATTCGAGATTCGAACGATGAGTTACGAGTTTTCTATTTTATTTTAATGGTAAATGAGCAGGCAGAGAAGGAGCTAGCAAAAGCAAGAGTGGAAGTGGCTCATGAGGTAAGATTGGCAAGAGAGGCTGAAGCTGCAATGGATCTTCATGTAGCCAAAGCTGGAATGAAGGCTGAGAAAGAGATGGCTAAGTATGCTGATACTCACACCAATACCTTCGTGGCTCCGGGCGGAACCGTCACCCCTCCTGATTACTCCGCAAACGTACCAGTCGCTCCCGGCATGACTATGGTTGGAGCCCCCGGCACCGTCGACATGGCCGGAGCTCCTTCTCCCGCTAATAAGAAGTTACTGTAA

mRNA sequence

ATGCAAGCAGTAAAGGAGAAGCTACACGATATGAGCGTCATGCGCAAGGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGCAGAGAAGGAGCTAGCAAAAGCAAGAGTGGAAGTGGCTCATGAGGTAAGATTGGCAAGAGAGGCTGAAGCTGCAATGGATCTTCATGTAGCCAAAGCTGGAATGAAGGCTGAGAAAGAGATGGCTAAGTATGCTGATACTCACACCAATACCTTCGTGGCTCCGGGCGGAACCGTCACCCCTCCTGATTACTCCGCAAACGTACCAGTCGCTCCCGGCATGACTATGGTTGGAGCCCCCGGCACCGTCGACATGGCCGGAGCTCCTTCTCCCGCTAATAAGAAGTTACTGTAA

Coding sequence (CDS)

ATGCAAGCAGTAAAGGAGAAGCTACACGATATGAGCGTCATGCGCAAGGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGCAGAGAAGGAGCTAGCAAAAGCAAGAGTGGAAGTGGCTCATGAGGTAAGATTGGCAAGAGAGGCTGAAGCTGCAATGGATCTTCATGTAGCCAAAGCTGGAATGAAGGCTGAGAAAGAGATGGCTAAGTATGCTGATACTCACACCAATACCTTCGTGGCTCCGGGCGGAACCGTCACCCCTCCTGATTACTCCGCAAACGTACCAGTCGCTCCCGGCATGACTATGGTTGGAGCCCCCGGCACCGTCGACATGGCCGGAGCTCCTTCTCCCGCTAATAAGAAGTTACTGTAA

Protein sequence

MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPANKKLL*
BLAST of MELO3C006232 vs. TrEMBL
Match: A0A0A0L6I7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127070 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 9.0e-56
Identity = 116/123 (94.31%), Postives = 118/123 (95.93%), Query Frame = 1

Query: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAV+EKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG
Sbjct: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPANK 120
           MKAEKEMAKYADTHTNTFV+PGGT T PDYS  VPVAPGMTMVGAPGTVDMAGAPSP NK
Sbjct: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYS--VPVAPGMTMVGAPGTVDMAGAPSPVNK 120

Query: 121 KLL 124
           KLL
Sbjct: 121 KLL 121

BLAST of MELO3C006232 vs. TrEMBL
Match: A0A151SFH7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_024626 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.9e-23
Identity = 61/93 (65.59%), Postives = 74/93 (79.57%), Query Frame = 1

Query: 1  MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
          MQAVKEKL DM+ +RKAKAEA+AEEKAEKE+AKAR++VAHEVRLA+EAEAAMDLHVAKAG
Sbjct: 1  MQAVKEKLQDMNAIRKAKAEARAEEKAEKEIAKARMDVAHEVRLAKEAEAAMDLHVAKAG 60

Query: 61 MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSAN 94
           + + E+AK+  T  N+  A       P Y+AN
Sbjct: 61 KRVDNELAKH--TLDNSNAATMDAANGPTYTAN 91

BLAST of MELO3C006232 vs. TrEMBL
Match: B9IB39_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17700g PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.9e-23
Identity = 57/76 (75.00%), Postives = 67/76 (88.16%), Query Frame = 1

Query: 1  MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
          MQAVK+KLHDM+ MR+AKAEAKAEEKAEKELAKAR++VAHEVRLAREAEA M+LHVAKAG
Sbjct: 1  MQAVKDKLHDMTAMRQAKAEAKAEEKAEKELAKARIDVAHEVRLAREAEAEMELHVAKAG 60

Query: 61 MKAEKEMAKYADTHTN 77
           + E+E+AK+     N
Sbjct: 61 QRVEREIAKHEFNENN 76

BLAST of MELO3C006232 vs. TrEMBL
Match: B9SKJ7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0659670 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-22
Identity = 62/91 (68.13%), Postives = 72/91 (79.12%), Query Frame = 1

Query: 1  MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
          MQA+KEKLHD++ MRKAKAEAKAEEKA KELAKARV++A EVRLAREAEA M+LHVAKAG
Sbjct: 1  MQAIKEKLHDLNTMRKAKAEAKAEEKAHKELAKARVDIAREVRLAREAEAEMELHVAKAG 60

Query: 61 MKAEKEMAKY-ADTHTNTF--VAPGGTVTPP 89
            AEKE+AK+ ++ H  T     PG T   P
Sbjct: 61 EMAEKEIAKHVSEDHKATAHNALPGATAASP 91

BLAST of MELO3C006232 vs. TrEMBL
Match: A0A072TZA1_MEDTR (Late embryogenesis abundant protein OS=Medicago truncatula GN=MTR_7g034335 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-22
Identity = 58/93 (62.37%), Postives = 73/93 (78.49%), Query Frame = 1

Query: 1  MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
          MQAVK+KL DM+ MRKA+AEAKA+EKAEKE+A+ARV++AHEVRLA+EAEA MDLHV KAG
Sbjct: 1  MQAVKDKLQDMNAMRKARAEAKAQEKAEKEIAQARVDIAHEVRLAKEAEAQMDLHVTKAG 60

Query: 61 MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSAN 94
           +AEKE+ K++ T+ N           PD +AN
Sbjct: 61 ERAEKEIEKHSSTNPN--------AANPDVNAN 85

BLAST of MELO3C006232 vs. TAIR10
Match: AT1G32560.1 (AT1G32560.1 Late embryogenesis abundant protein, group 1 protein)

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-11
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1

Query: 1  MQAVKEKLHDMSVMRKAK---AEAKAEEKAEKELAKARVE--VAHEVRLAREAEAAMDLH 60
          MQ+ K+K+ DM+   K K    +AKA+EKAE+ +A+ + E  +AH+ R A+EAEA MD+H
Sbjct: 1  MQSAKQKISDMASTAKEKMVICQAKADEKAERAMARTKEEKEIAHQRRKAKEAEANMDMH 60

Query: 61 VAKAGMKAEKEMAKYADTH 75
          +AKA    +K MAK +  H
Sbjct: 61 MAKAAHAEDKLMAKQSHYH 79

BLAST of MELO3C006232 vs. NCBI nr
Match: gi|659075595|ref|XP_008438228.1| (PREDICTED: uncharacterized protein LOC103483397 [Cucumis melo])

HSP 1 Score: 242.3 bits (617), Expect = 4.6e-61
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1

Query: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG
Sbjct: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPANK 120
           MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPANK
Sbjct: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPANK 120

Query: 121 KLL 124
           KLL
Sbjct: 121 KLL 123

BLAST of MELO3C006232 vs. NCBI nr
Match: gi|449433139|ref|XP_004134355.1| (PREDICTED: uncharacterized protein LOC101219295 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.3e-55
Identity = 116/123 (94.31%), Postives = 118/123 (95.93%), Query Frame = 1

Query: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAV+EKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG
Sbjct: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPANK 120
           MKAEKEMAKYADTHTNTFV+PGGT T PDYS  VPVAPGMTMVGAPGTVDMAGAPSP NK
Sbjct: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYS--VPVAPGMTMVGAPGTVDMAGAPSPVNK 120

Query: 121 KLL 124
           KLL
Sbjct: 121 KLL 121

BLAST of MELO3C006232 vs. NCBI nr
Match: gi|1009110461|ref|XP_015895645.1| (PREDICTED: uncharacterized protein LOC107429466 [Ziziphus jujuba])

HSP 1 Score: 119.4 bits (298), Expect = 4.5e-24
Identity = 67/119 (56.30%), Postives = 82/119 (68.91%), Query Frame = 1

Query: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAVK+K+ DM+ MRK KAEAKAEEKAEKE+AKAR+EVAHEVRLA+EAEAAMD+HVAKAG
Sbjct: 1   MQAVKDKISDMNAMRKVKAEAKAEEKAEKEIAKARMEVAHEVRLAKEAEAAMDMHVAKAG 60

Query: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPAN 120
            KA++E+AK+  T                 SA+   + GM    AP T +M+G P   N
Sbjct: 61  QKAQRELAKHNMT-----------------SASATASTGMPNTMAPPTNNMSGPPHHNN 102

BLAST of MELO3C006232 vs. NCBI nr
Match: gi|743932890|ref|XP_011010743.1| (PREDICTED: uncharacterized protein LOC105115528 [Populus euphratica])

HSP 1 Score: 117.5 bits (293), Expect = 1.7e-23
Identity = 59/81 (72.84%), Postives = 72/81 (88.89%), Query Frame = 1

Query: 1  MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
          MQAVK+KLHDM+ MRKAKAEAKAEEKAEKELAKAR++VAHEVRLAREAEA M+LHVAKAG
Sbjct: 1  MQAVKDKLHDMTTMRKAKAEAKAEEKAEKELAKARMDVAHEVRLAREAEAEMELHVAKAG 60

Query: 61 MKAEKEMAKYADTHTNTFVAP 82
           + E+E+AK+ + + N ++ P
Sbjct: 61 QRVEREIAKH-EFNENDYIVP 80

BLAST of MELO3C006232 vs. NCBI nr
Match: gi|1012342293|gb|KYP53488.1| (hypothetical protein KK1_024626 [Cajanus cajan])

HSP 1 Score: 115.2 bits (287), Expect = 8.4e-23
Identity = 61/93 (65.59%), Postives = 74/93 (79.57%), Query Frame = 1

Query: 1  MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
          MQAVKEKL DM+ +RKAKAEA+AEEKAEKE+AKAR++VAHEVRLA+EAEAAMDLHVAKAG
Sbjct: 1  MQAVKEKLQDMNAIRKAKAEARAEEKAEKEIAKARMDVAHEVRLAKEAEAAMDLHVAKAG 60

Query: 61 MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSAN 94
           + + E+AK+  T  N+  A       P Y+AN
Sbjct: 61 KRVDNELAKH--TLDNSNAATMDAANGPTYTAN 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L6I7_CUCSA9.0e-5694.31Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127070 PE=4 SV=1[more]
A0A151SFH7_CAJCA5.9e-2365.59Uncharacterized protein OS=Cajanus cajan GN=KK1_024626 PE=4 SV=1[more]
B9IB39_POPTR5.9e-2375.00Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17700g PE=4 SV=1[more]
B9SKJ7_RICCO1.0e-2268.13Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0659670 PE=4 SV=1[more]
A0A072TZA1_MEDTR3.8e-2262.37Late embryogenesis abundant protein OS=Medicago truncatula GN=MTR_7g034335 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT1G32560.13.5e-1145.57 Late embryogenesis abundant protein, group 1 protein[more]
Match NameE-valueIdentityDescription
gi|659075595|ref|XP_008438228.1|4.6e-61100.00PREDICTED: uncharacterized protein LOC103483397 [Cucumis melo][more]
gi|449433139|ref|XP_004134355.1|1.3e-5594.31PREDICTED: uncharacterized protein LOC101219295 [Cucumis sativus][more]
gi|1009110461|ref|XP_015895645.1|4.5e-2456.30PREDICTED: uncharacterized protein LOC107429466 [Ziziphus jujuba][more]
gi|743932890|ref|XP_011010743.1|1.7e-2372.84PREDICTED: uncharacterized protein LOC105115528 [Populus euphratica][more]
gi|1012342293|gb|KYP53488.1|8.4e-2365.59hypothetical protein KK1_024626 [Cajanus cajan][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005513LEA_1
Vocabulary: Biological Process
TermDefinition
GO:0009790embryo development
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009790 embryo development
biological_process GO:0009793 embryo development ending in seed dormancy
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006232T1MELO3C006232T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005513Late embryogenesis abundant protein, LEA-25/LEA-D113PFAMPF03760LEA_1coord: 1..66
score: 3.0
NoneNo IPR availableunknownCoilCoilcoord: 14..37
scor
NoneNo IPR availablePANTHERPTHR33493FAMILY NOT NAMEDcoord: 1..76
score: 2.4
NoneNo IPR availablePANTHERPTHR33493:SF3SUBFAMILY NOT NAMEDcoord: 1..76
score: 2.4

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006232Cucumber (Gy14) v1cgymeB439
MELO3C006232Cucumber (Gy14) v1cgymeB533
MELO3C006232Cucumber (Gy14) v1cgymeB594
MELO3C006232Cucurbita maxima (Rimu)cmameB242
MELO3C006232Cucurbita maxima (Rimu)cmameB343
MELO3C006232Cucurbita maxima (Rimu)cmameB852
MELO3C006232Cucurbita moschata (Rifu)cmomeB336
MELO3C006232Cucurbita moschata (Rifu)cmomeB755
MELO3C006232Cucurbita moschata (Rifu)cmomeB834
MELO3C006232Wild cucumber (PI 183967)cpimeB236
MELO3C006232Wild cucumber (PI 183967)cpimeB238
MELO3C006232Wild cucumber (PI 183967)cpimeB496
MELO3C006232Cucumber (Chinese Long) v2cumeB241
MELO3C006232Cucumber (Chinese Long) v2cumeB494
MELO3C006232Watermelon (Charleston Gray)mewcgB438
MELO3C006232Watermelon (97103) v1mewmB456
MELO3C006232Watermelon (97103) v1mewmB461
MELO3C006232Watermelon (97103) v1mewmB484
MELO3C006232Cucurbita pepo (Zucchini)cpemeB141
MELO3C006232Cucurbita pepo (Zucchini)cpemeB315
MELO3C006232Bottle gourd (USVL1VR-Ls)lsimeB034
MELO3C006232Bottle gourd (USVL1VR-Ls)lsimeB378
MELO3C006232Bottle gourd (USVL1VR-Ls)lsimeB445
MELO3C006232Cucumber (Gy14) v2cgybmeB205
MELO3C006232Cucumber (Gy14) v2cgybmeB208
MELO3C006232Cucumber (Gy14) v2cgybmeB435
MELO3C006232Silver-seed gourdcarmeB0236
MELO3C006232Silver-seed gourdcarmeB1049
MELO3C006232Cucumber (Chinese Long) v3cucmeB241
MELO3C006232Cucumber (Chinese Long) v3cucmeB244
MELO3C006232Cucumber (Chinese Long) v3cucmeB506
MELO3C006232Watermelon (97103) v2mewmbB428
MELO3C006232Watermelon (97103) v2mewmbB434
MELO3C006232Watermelon (97103) v2mewmbB445
MELO3C006232Wax gourdmewgoB513
MELO3C006232Wax gourdmewgoB522
MELO3C006232Melon (DHL92) v3.5.1memeB141
MELO3C006232Melon (DHL92) v3.5.1memeB054