Carg06352 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06352
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Late embryogenesis abundant protein
Location	Cucurbita_argyrosperma_scaffold_016 : 1146946 .. 1147930 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGCAAGCCGTCAAGGAAAAACTCCACGACATGAGCGTCCTGCGCAAGGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGTAAACACGTAAATCCGTTCATGTTAGTATTACATTTGAAAATGAATTGACATTTTTTTACCGTTAAATGTGTACGAGAAAGAAACTACCTGAGTAATTTTCCATTTAACTCTTCATCCACTTAGAAGAACCAAACAACAATCGATCACTAGCTTAACGTGAGATTACAAATCAGTTAAAGTGGGGAACGAAACATTATTTATAAGGGTTAAAGCGGACAATATTTGCTAGTGGTGGTCTTGGACAGTTACAAATGGGCTCATATCAATTGGAGTGGGGAACGAAACATGAATAGCTCAGCTCAAGCTACTCAATTTTCACGCTCTATAGTTCAAATCTAAGAAATGTTTTAAAAAGTCAAAATTTAGCATACAAACGAGACGTTTTATTAAGAAAAAAATGAAACTCGTAGTAAAAAAGAACGTGTACGGTTTTAAAAAATTTCACCGAGACGAAAATTTAGGGTTTGTACGAAATGGTTGAGAATTGTAGGTTGAGAAGGAGCTAGCAAAGGCAAGAGTGGAGGTGGCTCATGAGGTAAGACTAGCAAAAGAGGCGGAAGCTGAAATGGATCTTCATGTGGCGAGAGCTGGAATGATTGCTGAGAATGAAATGGCTATGTATGCCAAAAATCCTCCCACTTCCTTTGTACCTTCCGCCGCCGCCAACATTTCCATGGCCTCCGGCATGGCACTGGACGGAACCCCCTGCACCATCTACATGGCCGGAACTCCTGCCTCTAAGAAGTTACTGTAGTTTAATTTTCTTACTCTCAAAAACTAATAATTTTTACTATTTACTGCTTTGTTTCCTTTGTTTTTCCTTCAAGTTTTACCACATCTTGGGATGTTGTGTAATATTATATACAAATTTAAAATATCATAATAATTATTCAATTTATTATTT

mRNA sequence

AATGCAAGCCGTCAAGGAAAAACTCCACGACATGAGCGTCCTGCGCAAGGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGTTGAGAAGGAGCTAGCAAAGGCAAGAGTGGAGGTGGCTCATGAGGTAAGACTAGCAAAAGAGGCGGAAGCTGAAATGGATCTTCATGTGGCGAGAGCTGGAATGATTGCTGAGAATGAAATGGCTATGTATGCCAAAAATCCTCCCACTTCCTTTGTACCTTCCGCCGCCGCCAACATTTCCATGGCCTCCGGCATGGCACTGGACGGAACCCCCTGCACCATCTACATGGCCGGAACTCCTGCCTCTAAGAAGTTACTGTAGTTTAATTTTCTTACTCTCAAAAACTAATAATTTTTACTATTTACTGCTTTGTTTCCTTTGTTTTTCCTTCAAGTTTTACCACATCTTGGGATGTTGTGTAATATTATATACAAATTTAAAATATCATAATAATTATTCAATTTATTATTT

Coding sequence (CDS)

ATGCAAGCCGTCAAGGAAAAACTCCACGACATGAGCGTCCTGCGCAAGGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGTTGAGAAGGAGCTAGCAAAGGCAAGAGTGGAGGTGGCTCATGAGGTAAGACTAGCAAAAGAGGCGGAAGCTGAAATGGATCTTCATGTGGCGAGAGCTGGAATGATTGCTGAGAATGAAATGGCTATGTATGCCAAAAATCCTCCCACTTCCTTTGTACCTTCCGCCGCCGCCAACATTTCCATGGCCTCCGGCATGGCACTGGACGGAACCCCCTGCACCATCTACATGGCCGGAACTCCTGCCTCTAAGAAGTTACTGTAG

Protein sequence

MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPSAAANISMASGMALDGTPCTIYMAGTPASKKLL

Homology

[Close]

BLAST of Carg06352 vs. NCBI nr
Match: XP_023538811.1 (late embryogenesis abundant protein 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.9 bits (333), Expect = 6.9e-28
Identity = 97/109 (88.99%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 11  MSVLRKAKAXXXXXXXXXXXXXXXXXXXXXXVRLAKEAEAEMDLHVARAGMIAENEMAMY 70
           MSVLRKAKAXXXXXXXXXXXXXXXXXXXXX VRLAKEAEAEMDLHVARAGMIAENEMAMY
Sbjct: 1   MSVLRKAKAXXXXXXXXXXXXXXXXXXXXXEVRLAKEAEAEMDLHVARAGMIAENEMAMY 60

Query: 71  AKNPPTSFVPSAA------ANISMASGMALDGTPCTIYMAGTPASKKLL 114
           A NPPTSFVPS A      ANISMASG+ +DGTPCTIYMAGTPASKKLL
Sbjct: 61  ANNPPTSFVPSDAAAXXXXANISMASGLTMDGTPCTIYMAGTPASKKLL 109

[Close]

BLAST of Carg06352 vs. NCBI nr
Match: XP_022974150.1 (late embryogenesis abundant protein 6-like [Cucurbita maxima])

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 95/109 (87.16%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 11  MSVLRKAKAXXXXXXXXXXXXXXXXXXXXXXVRLAKEAEAEMDLHVARAGMIAENEMAMY 70
           MSVLRKAKAXXXXXXXXXXXXXXXXXXXXX VRLAKEAEAEMDLHVARAGMIAENEMA Y
Sbjct: 1   MSVLRKAKAXXXXXXXXXXXXXXXXXXXXXEVRLAKEAEAEMDLHVARAGMIAENEMATY 60

Query: 71  AKNPPTSFV------PSAAANISMASGMALDGTPCTIYMAGTPASKKLL 114
           A NPPTSFV           NISMASGMALDGTPCTIYMAGTPASKKLL
Sbjct: 61  ANNPPTSFVXXXXXXXXXXXNISMASGMALDGTPCTIYMAGTPASKKLL 109

[Close]

BLAST of Carg06352 vs. NCBI nr
Match: XP_008438228.1 (PREDICTED: uncharacterized protein LOC103483397 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 2.1e-16
Identity = 79/123 (64.23%), Postives = 90/123 (73.17%), Query Frame = 0


Query: 1   MQAVKEKLHDMSVLRKAKAXXXXXXXXXXXXXXXXXXXXXXVRLAKEAEAEMDLHVARAG 60
           MQAVKEKLHDMSV+RKAK XXXXXXXXXXXXXXXXXX    VRLA+EAEA MDLHVA+AG
Sbjct: 1   MQAVKEKLHDMSVMRKAKXXXXXXXXXXXXXXXXXXXVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MIAENEMAMYAKNPPTSFV--------PSAAANISMASGMALDGTPCTIYMAG--TPASK 114
           M AE EMA YA     +FV        P  +AN+ +A GM + G P T+ MAG  +PA+K
Sbjct: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPANK 120

[Close]

BLAST of Carg06352 vs. NCBI nr
Match: XP_004134355.1 (PREDICTED: uncharacterized protein LOC101219295 [Cucumis sativus] >KGN56644.1 hypothetical protein Csa_3G127070 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 7.4e-14
Identity = 74/121 (61.16%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 1   MQAVKEKLHDMSVLRKAKAXXXXXXXXXXXXXXXXXXXXXXVRLAKEAEAEMDLHVARAG 60
           MQAV+EKLHDMSV+RKAK XXXXXXXXXXXXXXXXXX    VRLA+EAEA MDLHVA+AG
Sbjct: 1   MQAVREKLHDMSVMRKAKXXXXXXXXXXXXXXXXXXXVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MIAENEMAMYAKNPPTSFVPSAAA------NISMASGMALDGTPCTIYMAG--TPASKKL 114
           M AE EMA YA     +FV           ++ +A GM + G P T+ MAG  +P +KKL
Sbjct: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKKL 120

[Close]

BLAST of Carg06352 vs. NCBI nr
Match: XP_022924652.1 (late embryogenesis abundant protein 6-like [Cucurbita moschata] >XP_022924653.1 late embryogenesis abundant protein 6-like [Cucurbita moschata])

HSP 1 Score: 67.0 bits (162), Expect = 4.7e-08
Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 1   MQAVKEKLHDMSVLRKAKAXXXXXXXXXXXXXXXXXXXXXXVRLAKEAEAEMDLHVARAG 60
           MQAV++KLHD++ +RKA  XXXXXXXXXXXXXXXXXX    VRLA+EAEA M LHVA+AG
Sbjct: 1   MQAVRDKLHDITAMRKAXXXXXXXXXXXXXXXXXXXXVAHEVRLAREAEAAMSLHVAKAG 60

Query: 61  MIAENEMAMYAKNPPTSFV---PSAAANISMASGMALDGTPCTIYMAG 106
             AE EMA +A      FV        N++ A G+ + G P T+ MAG
Sbjct: 61  KRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGAPGTVDMAG 108

[Close]

BLAST of Carg06352 vs. TrEMBL
Match: tr|A0A1S3AWI7|A0A1S3AWI7_CUCME (uncharacterized protein LOC103483397 OS=Cucumis melo OX=3656 GN=LOC103483397 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.4e-16
Identity = 79/123 (64.23%), Postives = 90/123 (73.17%), Query Frame = 0


Query: 1   MQAVKEKLHDMSVLRKAKAXXXXXXXXXXXXXXXXXXXXXXVRLAKEAEAEMDLHVARAG 60
           MQAVKEKLHDMSV+RKAK XXXXXXXXXXXXXXXXXX    VRLA+EAEA MDLHVA+AG
Sbjct: 1   MQAVKEKLHDMSVMRKAKXXXXXXXXXXXXXXXXXXXVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MIAENEMAMYAKNPPTSFV--------PSAAANISMASGMALDGTPCTIYMAG--TPASK 114
           M AE EMA YA     +FV        P  +AN+ +A GM + G P T+ MAG  +PA+K
Sbjct: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPANK 120

[Close]

BLAST of Carg06352 vs. TrEMBL
Match: tr|A0A0A0L6I7|A0A0A0L6I7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127070 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.9e-14
Identity = 74/121 (61.16%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 1   MQAVKEKLHDMSVLRKAKAXXXXXXXXXXXXXXXXXXXXXXVRLAKEAEAEMDLHVARAG 60
           MQAV+EKLHDMSV+RKAK XXXXXXXXXXXXXXXXXX    VRLA+EAEA MDLHVA+AG
Sbjct: 1   MQAVREKLHDMSVMRKAKXXXXXXXXXXXXXXXXXXXVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MIAENEMAMYAKNPPTSFVPSAAA------NISMASGMALDGTPCTIYMAG--TPASKKL 114
           M AE EMA YA     +FV           ++ +A GM + G P T+ MAG  +P +KKL
Sbjct: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKKL 120

[Close]

BLAST of Carg06352 vs. TrEMBL
Match: tr|A0A2N9GFH6|A0A2N9GFH6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25863 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.0e-08
Identity = 53/91 (58.24%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 1  MQAVKEKLHDMSVLRKAKAXXXXXXXXXXXXXXXXXXXXXXVRLAKEAEAEMDLHVARAG 60
          MQAVKEKLHDMS +RKAKAXXXXXXXXXXX           VRLAKEAEAEM+LHVA+AG
Sbjct: 1  MQAVKEKLHDMSEMRKAKAXXXXXXXXXXXIAKARMDVAHEVRLAKEAEAEMELHVAKAG 60

Query: 61 MIAENEMAMYAKNPPTSFVPSAAANISMASG 92
             E E A +A   P +   + A + +M++G
Sbjct: 61 EKVEKEAAKHAPMQPNASGTNMADHGAMSTG 91

[Close]

BLAST of Carg06352 vs. TrEMBL
Match: tr|A0A2P4KG37|A0A2P4KG37_QUESU (Late embryogenesis abundant protein 6 OS=Quercus suber OX=58331 GN=CFP56_32640 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07
Identity = 64/118 (54.24%), Postives = 75/118 (63.56%), Query Frame = 0


Query: 1   MQAVKEKLHDMSVLRKAKAXXXXXXXXXXXXXXXXXXXXXXVRLAKEAEAEMDLHVARAG 60
           MQAVK+KLHDMS +RKAK+XXXXXXXXXXXXXX        VRLAKEAEAEM+LHVA+AG
Sbjct: 1   MQAVKDKLHDMSEMRKAKSXXXXXXXXXXXXXXARMDVAHEVRLAKEAEAEMELHVAKAG 60

Query: 61  MIAENEMAMYAKNPPTSFVPS--AAANISMASGM------ALDGTPCTIYMAG-TPAS 110
              E E A  A   P +   +   A + +MA+G        +D  P TI  AG TP S
Sbjct: 61  QKVEREAAKNAPKKPNASGTNRDPADHCTMATGNRGLDHGPVDQAPPTINTAGITPPS 118

[Close]

BLAST of Carg06352 vs. TrEMBL
Match: tr|K7KYE5|K7KYE5_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102665037 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.4e-07
Identity = 48/79 (60.76%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 1  MQAVKEKLHDMSVLRKAKAXXXXXXXXXXXXXXXXXXXXXXVRLAKEAEAEMDLHVARAG 60
          MQAVKEKL D++  RKAKAXXXXXXXXXX            VRLAKEAEAEMD+HV +AG
Sbjct: 1  MQAVKEKLKDLNAARKAKAXXXXXXXXXXEIADARKNVAHEVRLAKEAEAEMDIHVEKAG 60

Query: 61 MIAENEMAMYA-KNPPTSF 79
           IAE E++ +A KNP   +
Sbjct: 61 KIAEKEISKHASKNPNVGY 79

The following BLAST results are available for this feature:

BLAST of Carg06352 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538811.1	6.9e-28	88.99	late embryogenesis abundant protein 6-like [Cucurbita pepo subsp. pepo]	[more]
XP_022974150.1	1.1e-25	87.16	late embryogenesis abundant protein 6-like [Cucurbita maxima]	[more]
XP_008438228.1	2.1e-16	64.23	PREDICTED: uncharacterized protein LOC103483397 [Cucumis melo]	[more]
XP_004134355.1	7.4e-14	61.16	PREDICTED: uncharacterized protein LOC101219295 [Cucumis sativus] >KGN56644.1 hy...	[more]
XP_022924652.1	4.7e-08	56.48	late embryogenesis abundant protein 6-like [Cucurbita moschata] >XP_022924653.1 ...	[more]

BLAST of Carg06352 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg06352 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg06352 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AWI7\|A0A1S3AWI7_CUCME	1.4e-16	64.23	uncharacterized protein LOC103483397 OS=Cucumis melo OX=3656 GN=LOC103483397 PE=...	[more]
tr\|A0A0A0L6I7\|A0A0A0L6I7_CUCSA	4.9e-14	61.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127070 PE=4 SV=1	[more]
tr\|A0A2N9GFH6\|A0A2N9GFH6_FAGSY	4.0e-08	58.24	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25863 PE=4 SV=1	[more]
tr\|A0A2P4KG37\|A0A2P4KG37_QUESU	2.6e-07	54.24	Late embryogenesis abundant protein 6 OS=Quercus suber OX=58331 GN=CFP56_32640 P...	[more]
tr\|K7KYE5\|K7KYE5_SOYBN	4.4e-07	60.76	Uncharacterized protein OS=Glycine max OX=3847 GN=102665037 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009793	embryo development ending in seed dormancy

Vocabulary: **INTERPRO**
Term	Definition
IPR005513	LEA_1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06352-RA	Carg06352-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..51
None	No IPR available	PANTHER	PTHR33493:SF3	SUBFAMILY NOT NAMED	coord: 1..107
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PFAM	PF03760	LEA_1	coord: 1..66 e-value: 4.2E-15 score: 56.1
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PANTHER	PTHR33493	FAMILY NOT NAMED	coord: 1..107

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06352	Cla021346	Watermelon (97103) v1	carwmB0961
Carg06352	Csa3G127070	Cucumber (Chinese Long) v2	carcuB0975
Carg06352	MELO3C006232	Melon (DHL92) v3.5.1	carmeB0941
Carg06352	ClCG05G002660	Watermelon (Charleston Gray)	carwcgB0935
Carg06352	CSPI03G09960	Wild cucumber (PI 183967)	carcpiB0998
Carg06352	CmaCh06G011650	Cucurbita maxima (Rimu)	carcmaB1325
Carg06352	CmoCh14G020140	Cucurbita moschata (Rifu)	carcmoB1284
Carg06352	CmoCh06G011930	Cucurbita moschata (Rifu)	carcmoB1288
Carg06352	Lsi05G019190	Bottle gourd (USVL1VR-Ls)	carlsiB878
Carg06352	Cp4.1LG03g17510	Cucurbita pepo (Zucchini)	carcpeB1331
Carg06352	Cp4.1LG08g02190	Cucurbita pepo (Zucchini)	carcpeB1333
Carg06352	CsGy3G010070	Cucumber (Gy14) v2	carcgybB0948
Carg06352	MELO3C006232.2	Melon (DHL92) v3.6.1	carmedB0947
Carg06352	CsaV3_3G010110	Cucumber (Chinese Long) v3	carcucB1003
Carg06352	Cla97C05G083170	Watermelon (97103) v2	carwmbB1008
Carg06352	Bhi01G000081	Wax gourd	carwgoB1118

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg06352	Carg14866	Silver-seed gourd	carcarB549

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06352	Cucurbita pepo (Zucchini)	carcpeB1328
Carg06352	Wild cucumber (PI 183967)	carcpiB0999
Carg06352	Cucumber (Chinese Long) v2	carcuB0976
Carg06352	Cucumber (Chinese Long) v3	carcucB1004
Carg06352	Bottle gourd (USVL1VR-Ls)	carlsiB875
Carg06352	Melon (DHL92) v3.5.1	carmeB0938
Carg06352	Melon (DHL92) v3.6.1	carmedB0944
Carg06352	Watermelon (Charleston Gray)	carwcgB0937
Carg06352	Watermelon (97103) v1	carwmB0963
Carg06352	Watermelon (97103) v2	carwmbB1010
Carg06352	Wax gourd	carwgoB1113
Carg06352	Silver-seed gourd	carcarB266
Carg06352	Cucumber (Gy14) v1	carcgyB1077
Carg06352	Cucumber (Gy14) v2	carcgybB0949
Carg06352	Cucumber (Gy14) v1	carcgyB1079
Carg06352	Cucurbita maxima (Rimu)	carcmaB1319
Carg06352	Cucurbita maxima (Rimu)	carcmaB1320
Carg06352	Cucurbita maxima (Rimu)	carcmaB1321
Carg06352	Cucurbita moschata (Rifu)	carcmoB1285