CSPI03G09960 (gene) Wild cucumber (PI 183967)

NameCSPI03G09960
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionLate embryogenesis abundant protein
LocationChr3 : 8037559 .. 8038723 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAACATTCTCTCTAAAGCTTTCCAAAGGCTGAATTTCAAACAGACAATCTTCAATTTTTACAAGTCCATAAACAAAAAGATGCAAGCAGTTAGGGAGAAGCTACACGATATGAGCATCATGCGCAAGGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGTGAGCTCTCGATGATGTTAGTTGTATTATTGAAAACATCTTCAATTCGAAAATATCATGAATACCTATTAATTGTTTTATCTTCCATAACTAGTACTGTTTTTTTTATCCCTTTCGATTGAGATATATAACAATCGAGATTCAAATAAAAATTTAATATCTACATCTCACATTCAAACTATCAACTTTTTTTTGTATAGAAATCATACACAATCTTTTCGTTTCTTTTTTTTTTTTGTATGTTTTCTAATTTTTTTATCAAATCCTCTCCAATATTTTTATTTTGTTCAATTATCTAAATTTCCTAATGAATTTACCACACATTCAAATGACTTTTTTAAATGGATATCGGGTGATTCACCATGTAATTTCTGTACAATCTCAAGTCATGCATCGTCCTAGTTGAGATCTCACCGAAAAAGCCCTATAGAGTAGTCATGCTAGTTATGACTATAGGAAAATGTCTTGCCCGAACAAAGATATTTGAGATTTGAACGATGAAATACAAGTTTTCATTTTATTTTAATGGTAAATGGGCAGGCAGAGAAGGAGCTAGCAAAAGCAAGAGTGGAAGTGGCTCATGAGGTAAGATTGGCACGAGAGGCTGAAGCTGCGATGGATCTTCATGTAGCCAAAGCTGGAATGAAGGCTGAGAAAGAGATGGCTAAGTATGCTGATACTCACACCAATACCTTTGTGTCTCCTGGCGGAACCACCACCCTTCCTGATTACTCCGTACCAGTAGCTCCCGGCATGACTATGGTTGGAGCCCCTGGCACCGTCGACATGGCCGGAGCTCCTTCTCCCGTTAATAAGAAGTTATTGTAAAAAAAAGTTCTTGTGTAACGCCATGCATAAAAAGTTTCATCTTTTATTTGCAAATAATGTACTTTGATTTGTTTTCTTTTTTCTACAAAGTTCTATATTATTCTACCACATCTTTAGATGTTGTGTAGTATATATTATAATCAATACACACAATAGCATTTAAGATCCTATTTTCGTT

mRNA sequence

ATGCAAGCAGTTAGGGAGAAGCTACACGATATGAGCATCATGCGCAAGGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGCAGAGAAGGAGCTAGCAAAAGCAAGAGTGGAAGTGGCTCATGAGGTAAGATTGGCACGAGAGGCTGAAGCTGCGATGGATCTTCATGTAGCCAAAGCTGGAATGAAGGCTGAGAAAGAGATGGCTAAGTATGCTGATACTCACACCAATACCTTTGTGTCTCCTGGCGGAACCACCACCCTTCCTGATTACTCCGTACCAGTAGCTCCCGGCATGACTATGGTTGGAGCCCCTGGCACCGTCGACATGGCCGGAGCTCCTTCTCCCGTTAATAAGAAGTTATTGTAA

Coding sequence (CDS)

ATGCAAGCAGTTAGGGAGAAGCTACACGATATGAGCATCATGCGCAAGGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGCAGAGAAGGAGCTAGCAAAAGCAAGAGTGGAAGTGGCTCATGAGGTAAGATTGGCACGAGAGGCTGAAGCTGCGATGGATCTTCATGTAGCCAAAGCTGGAATGAAGGCTGAGAAAGAGATGGCTAAGTATGCTGATACTCACACCAATACCTTTGTGTCTCCTGGCGGAACCACCACCCTTCCTGATTACTCCGTACCAGTAGCTCCCGGCATGACTATGGTTGGAGCCCCTGGCACCGTCGACATGGCCGGAGCTCCTTCTCCCGTTAATAAGAAGTTATTGTAA
BLAST of CSPI03G09960 vs. TrEMBL
Match: A0A0A0L6I7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127070 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.3e-55
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 1

Query: 1   MQAVREKLHDMSIMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAVREKLHDMS+MRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG
Sbjct: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKKL 120
           MKAEKEMAKYADTHTNTFVSPGGTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKKL
Sbjct: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKKL 120

Query: 121 L 122
           L
Sbjct: 121 L 121

BLAST of CSPI03G09960 vs. TrEMBL
Match: B9IB39_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17700g PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 56/76 (73.68%), Postives = 67/76 (88.16%), Query Frame = 1

Query: 1  MQAVREKLHDMSIMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
          MQAV++KLHDM+ MR+AKAEAKAEEKAEKELAKAR++VAHEVRLAREAEA M+LHVAKAG
Sbjct: 1  MQAVKDKLHDMTAMRQAKAEAKAEEKAEKELAKARIDVAHEVRLAREAEAEMELHVAKAG 60

Query: 61 MKAEKEMAKYADTHTN 77
           + E+E+AK+     N
Sbjct: 61 QRVEREIAKHEFNENN 76

BLAST of CSPI03G09960 vs. TrEMBL
Match: B9SKJ7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0659670 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.3e-18
Identity = 61/91 (67.03%), Postives = 72/91 (79.12%), Query Frame = 1

Query: 1  MQAVREKLHDMSIMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
          MQA++EKLHD++ MRKAKAEAKAEEKA KELAKARV++A EVRLAREAEA M+LHVAKAG
Sbjct: 1  MQAIKEKLHDLNTMRKAKAEAKAEEKAHKELAKARVDIAREVRLAREAEAEMELHVAKAG 60

Query: 61 MKAEKEMAKY-ADTHTNTF--VSPGGTTTLP 89
            AEKE+AK+ ++ H  T     PG T   P
Sbjct: 61 EMAEKEIAKHVSEDHKATAHNALPGATAASP 91

BLAST of CSPI03G09960 vs. TrEMBL
Match: A0A072TZA1_MEDTR (Late embryogenesis abundant protein OS=Medicago truncatula GN=MTR_7g034335 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-17
Identity = 53/76 (69.74%), Postives = 68/76 (89.47%), Query Frame = 1

Query: 1  MQAVREKLHDMSIMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
          MQAV++KL DM+ MRKA+AEAKA+EKAEKE+A+ARV++AHEVRLA+EAEA MDLHV KAG
Sbjct: 1  MQAVKDKLQDMNAMRKARAEAKAQEKAEKEIAQARVDIAHEVRLAKEAEAQMDLHVTKAG 60

Query: 61 MKAEKEMAKYADTHTN 77
           +AEKE+ K++ T+ N
Sbjct: 61 ERAEKEIEKHSSTNPN 76

BLAST of CSPI03G09960 vs. TrEMBL
Match: V4U983_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023977mg PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-17
Identity = 58/90 (64.44%), Postives = 72/90 (80.00%), Query Frame = 1

Query: 1  MQAVREKLHDMSIMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
          MQA+++KL DM+ MRKAKA+AK+EEK EKE+AKARVEVAHEVRLAREAEA M+LHVAKA 
Sbjct: 1  MQAIKDKLQDMNAMRKAKADAKSEEKVEKEMAKARVEVAHEVRLAREAEAEMELHVAKAA 60

Query: 61 MKAEKEMAKYADTHTNTFVSPGGTTTLPDY 91
           KAEKE+AK+ ++H+    +     T  DY
Sbjct: 61 EKAEKEIAKH-NSHSPHQQNDAAAATATDY 89

BLAST of CSPI03G09960 vs. TAIR10
Match: AT1G32560.1 (AT1G32560.1 Late embryogenesis abundant protein, group 1 protein)

HSP 1 Score: 51.2 bits (121), Expect = 5.2e-07
Identity = 35/79 (44.30%), Postives = 53/79 (67.09%), Query Frame = 1

Query: 1  MQAVREKLHDMSIMRKAK---AEAKAEEKAEKELAKARVE--VAHEVRLAREAEAAMDLH 60
          MQ+ ++K+ DM+   K K    +AKA+EKAE+ +A+ + E  +AH+ R A+EAEA MD+H
Sbjct: 1  MQSAKQKISDMASTAKEKMVICQAKADEKAERAMARTKEEKEIAHQRRKAKEAEANMDMH 60

Query: 61 VAKAGMKAEKEMAKYADTH 75
          +AKA    +K MAK +  H
Sbjct: 61 MAKAAHAEDKLMAKQSHYH 79

BLAST of CSPI03G09960 vs. NCBI nr
Match: gi|449433139|ref|XP_004134355.1| (PREDICTED: uncharacterized protein LOC101219295 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 4.8e-55
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 1

Query: 1   MQAVREKLHDMSIMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAVREKLHDMS+MRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG
Sbjct: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKKL 120
           MKAEKEMAKYADTHTNTFVSPGGTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKKL
Sbjct: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKKL 120

Query: 121 L 122
           L
Sbjct: 121 L 121

BLAST of CSPI03G09960 vs. NCBI nr
Match: gi|659075595|ref|XP_008438228.1| (PREDICTED: uncharacterized protein LOC103483397 [Cucumis melo])

HSP 1 Score: 208.8 bits (530), Expect = 5.5e-51
Identity = 115/123 (93.50%), Postives = 118/123 (95.93%), Query Frame = 1

Query: 1   MQAVREKLHDMSIMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAV+EKLHDMS+MRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG
Sbjct: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYS--VPVAPGMTMVGAPGTVDMAGAPSPVNK 120
           MKAEKEMAKYADTHTNTFV+PGGT T PDYS  VPVAPGMTMVGAPGTVDMAGAPSP NK
Sbjct: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPANK 120

Query: 121 KLL 122
           KLL
Sbjct: 121 KLL 123

BLAST of CSPI03G09960 vs. NCBI nr
Match: gi|1009110461|ref|XP_015895645.1| (PREDICTED: uncharacterized protein LOC107429466 [Ziziphus jujuba])

HSP 1 Score: 102.8 bits (255), Expect = 4.2e-19
Identity = 64/104 (61.54%), Postives = 78/104 (75.00%), Query Frame = 1

Query: 1   MQAVREKLHDMSIMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAV++K+ DM+ MRK KAEAKAEEKAEKE+AKAR+EVAHEVRLA+EAEAAMD+HVAKAG
Sbjct: 1   MQAVKDKISDMNAMRKVKAEAKAEEKAEKEIAKARMEVAHEVRLAKEAEAAMDMHVAKAG 60

Query: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYSVPVAPGMTMVGAP 105
            KA++E+AK    H  T  S   +T +P+   P  P   M G P
Sbjct: 61  QKAQRELAK----HNMTSASATASTGMPNTMAP--PTNNMSGPP 98

BLAST of CSPI03G09960 vs. NCBI nr
Match: gi|743932890|ref|XP_011010743.1| (PREDICTED: uncharacterized protein LOC105115528 [Populus euphratica])

HSP 1 Score: 102.4 bits (254), Expect = 5.6e-19
Identity = 58/81 (71.60%), Postives = 72/81 (88.89%), Query Frame = 1

Query: 1  MQAVREKLHDMSIMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
          MQAV++KLHDM+ MRKAKAEAKAEEKAEKELAKAR++VAHEVRLAREAEA M+LHVAKAG
Sbjct: 1  MQAVKDKLHDMTTMRKAKAEAKAEEKAEKELAKARMDVAHEVRLAREAEAEMELHVAKAG 60

Query: 61 MKAEKEMAKYADTHTNTFVSP 82
           + E+E+AK+ + + N ++ P
Sbjct: 61 QRVEREIAKH-EFNENDYIVP 80

BLAST of CSPI03G09960 vs. NCBI nr
Match: gi|224132066|ref|XP_002321247.1| (hypothetical protein POPTR_0014s17700g [Populus trichocarpa])

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-18
Identity = 56/76 (73.68%), Postives = 67/76 (88.16%), Query Frame = 1

Query: 1  MQAVREKLHDMSIMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
          MQAV++KLHDM+ MR+AKAEAKAEEKAEKELAKAR++VAHEVRLAREAEA M+LHVAKAG
Sbjct: 1  MQAVKDKLHDMTAMRQAKAEAKAEEKAEKELAKARIDVAHEVRLAREAEAEMELHVAKAG 60

Query: 61 MKAEKEMAKYADTHTN 77
           + E+E+AK+     N
Sbjct: 61 QRVEREIAKHEFNENN 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L6I7_CUCSA3.3e-5599.17Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127070 PE=4 SV=1[more]
B9IB39_POPTR1.1e-1873.68Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17700g PE=4 SV=1[more]
B9SKJ7_RICCO7.3e-1867.03Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0659670 PE=4 SV=1[more]
A0A072TZA1_MEDTR1.2e-1769.74Late embryogenesis abundant protein OS=Medicago truncatula GN=MTR_7g034335 PE=4 ... [more]
V4U983_9ROSI1.2e-1764.44Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023977mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G32560.15.2e-0744.30 Late embryogenesis abundant protein, group 1 protein[more]
Match NameE-valueIdentityDescription
gi|449433139|ref|XP_004134355.1|4.8e-5599.17PREDICTED: uncharacterized protein LOC101219295 [Cucumis sativus][more]
gi|659075595|ref|XP_008438228.1|5.5e-5193.50PREDICTED: uncharacterized protein LOC103483397 [Cucumis melo][more]
gi|1009110461|ref|XP_015895645.1|4.2e-1961.54PREDICTED: uncharacterized protein LOC107429466 [Ziziphus jujuba][more]
gi|743932890|ref|XP_011010743.1|5.6e-1971.60PREDICTED: uncharacterized protein LOC105115528 [Populus euphratica][more]
gi|224132066|ref|XP_002321247.1|1.6e-1873.68hypothetical protein POPTR_0014s17700g [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005513LEA_1
Vocabulary: Biological Process
TermDefinition
GO:0009790embryo development
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009790 embryo development
biological_process GO:0009793 embryo development ending in seed dormancy
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G09960.1CSPI03G09960.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005513Late embryogenesis abundant protein, LEA-25/LEA-D113PFAMPF03760LEA_1coord: 1..66
score: 1.9
NoneNo IPR availableunknownCoilCoilcoord: 14..37
scor
NoneNo IPR availablePANTHERPTHR33493FAMILY NOT NAMEDcoord: 1..76
score: 1.8
NoneNo IPR availablePANTHERPTHR33493:SF3SUBFAMILY NOT NAMEDcoord: 1..76
score: 1.8

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G09960Cucurbita moschata (Rifu)cmocpiB353
CSPI03G09960Cucurbita moschata (Rifu)cmocpiB814
CSPI03G09960Cucurbita moschata (Rifu)cmocpiB889
CSPI03G09960Cucumber (Chinese Long) v2cpicuB123
CSPI03G09960Cucumber (Chinese Long) v2cpicuB150
CSPI03G09960Melon (DHL92) v3.5.1cpimeB177
CSPI03G09960Melon (DHL92) v3.5.1cpimeB224
CSPI03G09960Watermelon (Charleston Gray)cpiwcgB250
CSPI03G09960Watermelon (97103) v1cpiwmB231
CSPI03G09960Watermelon (97103) v1cpiwmB278
CSPI03G09960Cucurbita pepo (Zucchini)cpecpiB136
CSPI03G09960Cucurbita pepo (Zucchini)cpecpiB309
CSPI03G09960Bottle gourd (USVL1VR-Ls)cpilsiB153
CSPI03G09960Bottle gourd (USVL1VR-Ls)cpilsiB207
CSPI03G09960Bottle gourd (USVL1VR-Ls)cpilsiB231
CSPI03G09960Melon (DHL92) v3.6.1cpimedB168
CSPI03G09960Cucumber (Gy14) v2cgybcpiB115
CSPI03G09960Cucumber (Gy14) v2cgybcpiB116
CSPI03G09960Cucumber (Gy14) v2cgybcpiB264
CSPI03G09960Silver-seed gourdcarcpiB0261
CSPI03G09960Silver-seed gourdcarcpiB1113
CSPI03G09960Cucumber (Chinese Long) v3cpicucB150
CSPI03G09960Cucumber (Chinese Long) v3cpicucB151
CSPI03G09960Cucumber (Chinese Long) v3cpicucB178
CSPI03G09960Watermelon (97103) v2cpiwmbB188
CSPI03G09960Watermelon (97103) v2cpiwmbB209
CSPI03G09960Watermelon (97103) v2cpiwmbB234
CSPI03G09960Wax gourdcpiwgoB260
CSPI03G09960Wild cucumber (PI 183967)cpicpiB101
CSPI03G09960Wild cucumber (PI 183967)cpicpiB103
CSPI03G09960Wild cucumber (PI 183967)cpicpiB126
CSPI03G09960Cucumber (Gy14) v1cgycpiB383
CSPI03G09960Cucumber (Gy14) v1cgycpiB486
CSPI03G09960Cucumber (Gy14) v1cgycpiB537
CSPI03G09960Cucurbita maxima (Rimu)cmacpiB255
CSPI03G09960Cucurbita maxima (Rimu)cmacpiB361
CSPI03G09960Cucurbita maxima (Rimu)cmacpiB910