MELO3C006112.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C006112.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionCalcium-dependent lipid-binding (CaLB domain) family protein
Locationchr06 : 1143525 .. 1143934 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTACATGTTCCAACTTAAACATAGCAGAATCCATCTTGGTGGGATAGTTTCAGAGGGGTATGAAAGAGGATTCATAGAAGTAAGGCCAGCCCCATACAACGTAGTGCTCGAGGAGGACAACACTTACAAAGGAGAAATAAAAATAGGATTCAAGTTCTTCATCAAAGTAAGTTGCATATACAAAATTTCCTTATATCCATCACAATAGTTATAGTTATTTTTGCAAATTCTTGACCTTTTCAGGAAGAAATAGCTCTAATGGAAGCAAGAGAGTCTATTGCAGATGGGAAACTGCAAAGAAAACCGATCTGCAGCAAAGCTATGAACTTATGGAGAATTGTATGGTTGAAGTTATCCTGCTTCATTGGCCACAAGAATTCTTCCAGTGAACGAAAGACGCAATGA

mRNA sequence

ATGTCTTACATGTTCCAACTTAAACATAGCAGAATCCATCTTGGTGGGATAGTTTCAGAGGGGTATGAAAGAGGATTCATAGAAGTAAGGCCAGCCCCATACAACGTAGTGCTCGAGGAGGACAACACTTACAAAGGAGAAATAAAAATAGGATTCAAGTTCTTCATCAAAGAAGAAATAGCTCTAATGGAAGCAAGAGAGTCTATTGCAGATGGGAAACTGCAAAGAAAACCGATCTGCAGCAAAGCTATGAACTTATGGAGAATTGTATGGTTGAAGTTATCCTGCTTCATTGGCCACAAGAATTCTTCCAGTGAACGAAAGACGCAATGA

Coding sequence (CDS)

ATGTCTTACATGTTCCAACTTAAACATAGCAGAATCCATCTTGGTGGGATAGTTTCAGAGGGGTATGAAAGAGGATTCATAGAAGTAAGGCCAGCCCCATACAACGTAGTGCTCGAGGAGGACAACACTTACAAAGGAGAAATAAAAATAGGATTCAAGTTCTTCATCAAAGAAGAAATAGCTCTAATGGAAGCAAGAGAGTCTATTGCAGATGGGAAACTGCAAAGAAAACCGATCTGCAGCAAAGCTATGAACTTATGGAGAATTGTATGGTTGAAGTTATCCTGCTTCATTGGCCACAAGAATTCTTCCAGTGAACGAAAGACGCAATGA

Protein sequence

MSYMFQLKHSRIHLGGIVSEGYERGFIEVRPAPYNVVLEEDNTYKGEIKIGFKFFIKEEIALMEARESIADGKLQRKPICSKAMNLWRIVWLKLSCFIGHKNSSSERKTQ
Homology
[Close]
BLAST of MELO3C006112.2 vs. NCBI nr
Match: XP_016898949.1 (PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 8.2e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 12  IHLGGIVSEGYERGFIEVRPAPYNVVLEEDNTYKGEIKIGFKFFIKEEIALMEARESIAD 71
           IHLGGIVSEGYERGFIEVRPAPYNVVLEEDNTYKGEIKIGFKFFIKEEIALMEARESIAD
Sbjct: 726 IHLGGIVSEGYERGFIEVRPAPYNVVLEEDNTYKGEIKIGFKFFIKEEIALMEARESIAD 785

Query: 72  GKLQRKPICSKAMNLWRIVWLKLSCFIGHKNSSSERKTQ 111
           GKLQRKPICSKAMNLWRIVWLKLSCFIGHKNSSSERKTQ
Sbjct: 786 GKLQRKPICSKAMNLWRIVWLKLSCFIGHKNSSSERKTQ 824

[Close]
BLAST of MELO3C006112.2 vs. NCBI nr
Match: KGN56516.1 (hypothetical protein Csa_3G122400 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 7.4e-43
Identity = 88/99 (88.89%), Postives = 91/99 (91.92%), Query Frame = 0 

Query: 12  IHLGGIVSEGYERGFIEVRPAPYNVVLEEDNTYKGEIKIGFKFFIKEEIALMEARESIAD 71
           IHLGGIVSEGYERG IEV PAPYNVVLEEDNTYKGEIKIGFKFF KEEIAL EARESIAD
Sbjct: 89  IHLGGIVSEGYERGLIEVLPAPYNVVLEEDNTYKGEIKIGFKFFTKEEIALTEARESIAD 148

Query: 72  GKLQRKPICSKAMNLWRIVWLKLSCFIGHKNSSSERKTQ 111
           GKLQR+PICSK +NLWRIVWLKLSCFI HKNSSS +K Q
Sbjct: 149 GKLQRQPICSKILNLWRIVWLKLSCFIDHKNSSSGQKKQ 187

[Close]
BLAST of MELO3C006112.2 vs. NCBI nr
Match: XP_022924546.1 (uncharacterized protein LOC111431998 [Cucurbita moschata])

HSP 1 Score: 160.2 bits (404), Expect = 3.9e-36
Identity = 78/99 (78.79%), Postives = 81/99 (81.82%), Query Frame = 0 

Query: 12  IHLGGIVSEGYERGFIEVRPAPYNVVLEEDNTYKGEIKIGFKFFIKEEIALMEARESIAD 71
           IHLGGI+SEGYERGFIEVRPAPYNVVLEED+TYKGEIKIGFKFF KEEI  MEARE IAD
Sbjct: 71  IHLGGIISEGYERGFIEVRPAPYNVVLEEDDTYKGEIKIGFKFFTKEEIVQMEAREFIAD 130

Query: 72  GKLQRKPICSKAMNLWRIVWLKLSCFIGHKNSSSERKTQ 111
            K +RKPI  K MNLW  VWLKL C  GHK  SS RK Q
Sbjct: 131 VKQERKPIYGKVMNLWTNVWLKLLCLFGHKKFSSGRKQQ 169

[Close]
BLAST of MELO3C006112.2 vs. NCBI nr
Match: XP_023528830.1 (uncharacterized protein LOC111791648 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.9 bits (398), Expect = 2.0e-35
Identity = 77/99 (77.78%), Postives = 82/99 (82.83%), Query Frame = 0 

Query: 12  IHLGGIVSEGYERGFIEVRPAPYNVVLEEDNTYKGEIKIGFKFFIKEEIALMEARESIAD 71
           I+LGGI+SEGYERGFIEVRPAPYNVVLEED+TYKGEIKIGFKFF KEEI  MEARE IAD
Sbjct: 94  IYLGGIISEGYERGFIEVRPAPYNVVLEEDDTYKGEIKIGFKFFTKEEIVQMEAREFIAD 153

Query: 72  GKLQRKPICSKAMNLWRIVWLKLSCFIGHKNSSSERKTQ 111
            K +RKPI  K MNLW  VWLKL C  G+KN SS RK Q
Sbjct: 154 VKQERKPIYGKVMNLWTNVWLKLLCLFGYKNFSSGRKQQ 192

[Close]
BLAST of MELO3C006112.2 vs. NCBI nr
Match: XP_023528834.1 (uncharacterized protein LOC111791648 isoform X5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.9 bits (398), Expect = 2.0e-35
Identity = 77/99 (77.78%), Postives = 82/99 (82.83%), Query Frame = 0 

Query: 12  IHLGGIVSEGYERGFIEVRPAPYNVVLEEDNTYKGEIKIGFKFFIKEEIALMEARESIAD 71
           I+LGGI+SEGYERGFIEVRPAPYNVVLEED+TYKGEIKIGFKFF KEEI  MEARE IAD
Sbjct: 75  IYLGGIISEGYERGFIEVRPAPYNVVLEEDDTYKGEIKIGFKFFTKEEIVQMEAREFIAD 134

Query: 72  GKLQRKPICSKAMNLWRIVWLKLSCFIGHKNSSSERKTQ 111
            K +RKPI  K MNLW  VWLKL C  G+KN SS RK Q
Sbjct: 135 VKQERKPIYGKVMNLWTNVWLKLLCLFGYKNFSSGRKQQ 173

[Close]
BLAST of MELO3C006112.2 vs. TAIR10
Match: AT4G00467.1 (Calcium-dependent lipid-binding (CaLB domain) family protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-14
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 0 

Query: 12  IHLGGIVSEGYERGFIEVRPAPYNVVLEEDNTYKGEIKIGFKFFIKEEIALMEARESIAD 71
           IHLGGI++EG +RG+IE++PAPYNVVLE+D T+KGE+K+G +F   +++   +A E   +
Sbjct: 92  IHLGGIITEGRDRGYIEIKPAPYNVVLEDD-TFKGELKVGLRFIATDKLQ-RKAWELKME 151

Query: 72  GKLQRKPICSKAMNLWRI-------VWLKLSCFIGHK 102
            K   + + S   NL ++        W +  C I  K
Sbjct: 152 AKNSEELMISPIQNLMKLPLLRFIAAWARRQCLINAK 186

[Close]
BLAST of MELO3C006112.2 vs. TrEMBL
Match: tr|A0A1S4DSI8|A0A1S4DSI8_CUCME (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g56570 OS=Cucumis melo OX=3656 GN=LOC103484166 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 5.4e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 12  IHLGGIVSEGYERGFIEVRPAPYNVVLEEDNTYKGEIKIGFKFFIKEEIALMEARESIAD 71
           IHLGGIVSEGYERGFIEVRPAPYNVVLEEDNTYKGEIKIGFKFFIKEEIALMEARESIAD
Sbjct: 726 IHLGGIVSEGYERGFIEVRPAPYNVVLEEDNTYKGEIKIGFKFFIKEEIALMEARESIAD 785

Query: 72  GKLQRKPICSKAMNLWRIVWLKLSCFIGHKNSSSERKTQ 111
           GKLQRKPICSKAMNLWRIVWLKLSCFIGHKNSSSERKTQ
Sbjct: 786 GKLQRKPICSKAMNLWRIVWLKLSCFIGHKNSSSERKTQ 824

[Close]
BLAST of MELO3C006112.2 vs. TrEMBL
Match: tr|A0A0A0L8X2|A0A0A0L8X2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122400 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.9e-43
Identity = 88/99 (88.89%), Postives = 91/99 (91.92%), Query Frame = 0 

Query: 12  IHLGGIVSEGYERGFIEVRPAPYNVVLEEDNTYKGEIKIGFKFFIKEEIALMEARESIAD 71
           IHLGGIVSEGYERG IEV PAPYNVVLEEDNTYKGEIKIGFKFF KEEIAL EARESIAD
Sbjct: 89  IHLGGIVSEGYERGLIEVLPAPYNVVLEEDNTYKGEIKIGFKFFTKEEIALTEARESIAD 148

Query: 72  GKLQRKPICSKAMNLWRIVWLKLSCFIGHKNSSSERKTQ 111
           GKLQR+PICSK +NLWRIVWLKLSCFI HKNSSS +K Q
Sbjct: 149 GKLQRQPICSKILNLWRIVWLKLSCFIDHKNSSSGQKKQ 187

[Close]
BLAST of MELO3C006112.2 vs. TrEMBL
Match: tr|A0A251QI60|A0A251QI60_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G170300 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.3e-18
Identity = 51/98 (52.04%), Postives = 69/98 (70.41%), Query Frame = 0 

Query: 12  IHLGGIVSEGYERGFIEVRPAPYNVVLEEDNTYKGEIKIGFKFFIKEEIALMEARESIAD 71
           +HLGGI++EG ++GFIE++PAPYNVVLE+D TYKGEIKIGF+F   +E  ++E RE +A+
Sbjct: 92  VHLGGIITEGKDKGFIELKPAPYNVVLEDD-TYKGEIKIGFRFITNKEAHVIETREFLAE 151

Query: 72  GKLQ-RKPICSKAMNLWRIVWLK-LSCFIGHKNSSSER 108
            K + R  I     NLWRI+W + L C   HK  S  +
Sbjct: 152 DKTKPRGSIRRSIANLWRILWWRFLFC---HKTDSKNK 185

[Close]
BLAST of MELO3C006112.2 vs. TrEMBL
Match: tr|A0A2P6SHA9|A0A2P6SHA9_ROSCH (Putative C2 domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0355241 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.5e-17
Identity = 51/98 (52.04%), Postives = 69/98 (70.41%), Query Frame = 0 

Query: 12  IHLGGIVSEGYERGFIEVRPAPYNVVLEEDNTYKGEIKIGFKFFIKEEIALMEARESIAD 71
           IH+GGI++EG +RGFIEV+PAPYNVVLE+D TYKGEIKIGF+F   +E A++  RE +A+
Sbjct: 73  IHIGGIITEGKDRGFIEVKPAPYNVVLEDD-TYKGEIKIGFRFVANKE-AVVNTREYLAE 132

Query: 72  GKLQ-RKPICSKAMNLWRIVWLKLSCFIGHKNSSSERK 109
              + R  IC    NLW+ +W K   F    +S++ RK
Sbjct: 133 NNTKPRGSICRTIANLWKGLWWKF-LFCQRTDSNNSRK 167

[Close]
BLAST of MELO3C006112.2 vs. TrEMBL
Match: tr|A0A1S2YW21|A0A1S2YW21_CICAR (elicitor-responsive protein 3 OS=Cicer arietinum OX=3827 GN=LOC101494738 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.9e-16
Identity = 45/100 (45.00%), Postives = 69/100 (69.00%), Query Frame = 0 

Query: 10  SRIHLGGIVSEGYERGFIEVRPAPYNVVLEEDNTYKGEIKIGFKFFIKEEIALMEARESI 69
           +++H+GGI++EG  +G+I+++PA YNVVLE+D TYKG+IKIGFKF   +E  +M  +ESI
Sbjct: 91  AKVHIGGIITEGINQGYIDIKPAAYNVVLEDD-TYKGQIKIGFKFIANKENYMMRKQESI 150

Query: 70  ADGK-LQRKPICSKAMNLWRIVWLKLSCFIGHKNSSSERK 109
           A+ K      IC    ++WRI W K   F  +K +S +++
Sbjct: 151 AEEKGPSHNSICG---SIWRISWWKFLFFYNNKINSKDKQ 186

The following BLAST results are available for this feature:
BLAST of MELO3C006112.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016898949.18.2e-50100.00PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing pro... [more]
KGN56516.17.4e-4388.89hypothetical protein Csa_3G122400 [Cucumis sativus][more]
XP_022924546.13.9e-3678.79uncharacterized protein LOC111431998 [Cucurbita moschata][more]
XP_023528830.12.0e-3577.78uncharacterized protein LOC111791648 isoform X3 [Cucurbita pepo subsp. pepo][more]
XP_023528834.12.0e-3577.78uncharacterized protein LOC111791648 isoform X5 [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C006112.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G00467.11.4e-1440.21Calcium-dependent lipid-binding (CaLB domain) family protein[more]
BLAST of MELO3C006112.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C006112.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DSI8|A0A1S4DSI8_CUCME5.4e-50100.00LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g56... [more]
tr|A0A0A0L8X2|A0A0A0L8X2_CUCSA4.9e-4388.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122400 PE=4 SV=1[more]
tr|A0A251QI60|A0A251QI60_PRUPE9.3e-1852.04Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G170300 PE=4 SV=1[more]
tr|A0A2P6SHA9|A0A2P6SHA9_ROSCH3.5e-1752.04Putative C2 domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr... [more]
tr|A0A1S2YW21|A0A1S2YW21_CICAR3.9e-1645.00elicitor-responsive protein 3 OS=Cicer arietinum OX=3827 GN=LOC101494738 PE=4 SV... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006112.2.1MELO3C006112.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006112.2Csa3G122400Cucumber (Chinese Long) v2cumedB223
MELO3C006112.2CmaCh14G020370Cucurbita maxima (Rimu)cmamedB273
MELO3C006112.2CmoCh14G020970Cucurbita moschata (Rifu)cmomedB260
MELO3C006112.2Lsi05G020370Bottle gourd (USVL1VR-Ls)lsimedB396
MELO3C006112.2Cp4.1LG03g16730Cucurbita pepo (Zucchini)cpemedB693
MELO3C006112.2Cla021238Watermelon (97103) v1medwmB447
MELO3C006112.2ClCG05G001540Watermelon (Charleston Gray)medwcgB416
MELO3C006112.2Cla97C05G081930Watermelon (97103) v2medwmbB423
MELO3C006112.2Bhi01G000256Wax gourdmedwgoB533
MELO3C006112.2CsaV3_3G008920Cucumber (Chinese Long) v3cucmedB230
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006112.2Cucumber (Gy14) v2cgybmedB201
MELO3C006112.2Cucumber (Gy14) v1cgymedB432
MELO3C006112.2Cucurbita maxima (Rimu)cmamedB338
MELO3C006112.2Cucurbita maxima (Rimu)cmamedB435
MELO3C006112.2Cucurbita maxima (Rimu)cmamedB664
MELO3C006112.2Cucurbita maxima (Rimu)cmamedB863
MELO3C006112.2Cucurbita maxima (Rimu)cmamedB872
MELO3C006112.2Cucurbita moschata (Rifu)cmomedB424
MELO3C006112.2Cucurbita moschata (Rifu)cmomedB653
MELO3C006112.2Cucurbita moschata (Rifu)cmomedB857
MELO3C006112.2Cucurbita moschata (Rifu)cmomedB863
MELO3C006112.2Cucurbita pepo (Zucchini)cpemedB049
MELO3C006112.2Cucurbita pepo (Zucchini)cpemedB225
MELO3C006112.2Cucurbita pepo (Zucchini)cpemedB950
MELO3C006112.2Cucurbita pepo (Zucchini)cpemedB951
MELO3C006112.2Wild cucumber (PI 183967)cpimedB224
MELO3C006112.2Melon (DHL92) v3.6.1medmedB148
MELO3C006112.2Bottle gourd (USVL1VR-Ls)lsimedB394
MELO3C006112.2Watermelon (Charleston Gray)medwcgB428
MELO3C006112.2Watermelon (97103) v1medwmB456
MELO3C006112.2Silver-seed gourdcarmedB0393
MELO3C006112.2Silver-seed gourdcarmedB0503